RNA–Protein interactions for RNA: ENST00000338963.6

NEDD4-201, Transcript of neural precursor cell expressed, developmentally down-regulated 4, E3 ubiquitin protein ligase, humanhuman

TSL 1 (best) BASIC

Gene NEDD4, Length 7,019 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NEDD4-201ENST00000338963 TACC3Q9Y6A5 838 aa4.46□□□□□ -1.7
NEDD4-201ENST00000338963 EPN1Q9Y6I3 576 aaPredicted RBP4.46□□□□□ -1.7
NEDD4-201ENST00000338963 UMODL1Q5DID0 1318 aa4.46□□□□□ -1.7
NEDD4-201ENST00000338963 SUPT6HQ7KZ85 1726 aaKnown RBP4.46□□□□□ -1.7
NEDD4-201ENST00000338963 SMARCA4P51532 1647 aa4.45□□□□□ -1.7
NEDD4-201ENST00000338963 NSD3Q9BZ95 1437 aa4.45□□□□□ -1.7
NEDD4-201ENST00000338963 CCDC160A6NGH7 325 aa4.45□□□□□ -1.7
NEDD4-201ENST00000338963 MAPK13O15264 365 aa4.45□□□□□ -1.7
NEDD4-201ENST00000338963 B3GALNT1O75752 331 aa4.45□□□□□ -1.7
NEDD4-201ENST00000338963 HDGFP51858 240 aaKnown RBP4.45□□□□□ -1.7
NEDD4-201ENST00000338963 HSPA14Q0VDF9 509 aa4.45□□□□□ -1.7
NEDD4-201ENST00000338963 PDAP1Q13442 181 aaKnown RBP4.45□□□□□ -1.7
NEDD4-201ENST00000338963 KRT81Q14533 505 aa4.45□□□□□ -1.7
NEDD4-201ENST00000338963 FAM122CQ6P4D5 195 aa4.45□□□□□ -1.7
NEDD4-201ENST00000338963 ITIH5Q86UX2 942 aa4.45□□□□□ -1.7
NEDD4-201ENST00000338963 ANGPTL6Q8NI99 470 aa4.45□□□□□ -1.7
NEDD4-201ENST00000338963 ISCUQ9H1K1 167 aa4.45□□□□□ -1.7
NEDD4-201ENST00000338963 CYLDQ9NQC7 956 aa4.45□□□□□ -1.7
NEDD4-201ENST00000338963 TYW1Q9NV66 732 aaKnown RBP4.45□□□□□ -1.7
NEDD4-201ENST00000338963 LAMC3Q9Y6N6 1575 aa4.45□□□□□ -1.7
NEDD4-201ENST00000338963 DISP1Q96F81 1524 aa4.45□□□□□ -1.7
NEDD4-201ENST00000338963 GNAT3A8MTJ3 354 aa4.45□□□□□ -1.7
NEDD4-201ENST00000338963 B8ZZF3 427 aa4.45□□□□□ -1.7
NEDD4-201ENST00000338963 RARAP10276 462 aa4.45□□□□□ -1.7
NEDD4-201ENST00000338963 PYGMP11217 842 aa4.45□□□□□ -1.7
NEDD4-201ENST00000338963 PTPN4P29074 926 aa4.45□□□□□ -1.7
NEDD4-201ENST00000338963 STX17P56962 302 aa4.45□□□□□ -1.7
NEDD4-201ENST00000338963 UBXN1Q04323 297 aa4.45□□□□□ -1.7
NEDD4-201ENST00000338963 SQLEQ14534 574 aa4.45□□□□□ -1.7
NEDD4-201ENST00000338963 TMEM63BQ5T3F8 832 aa4.45□□□□□ -1.7
NEDD4-201ENST00000338963 PPP4R4Q6NUP7 873 aa4.45□□□□□ -1.7
NEDD4-201ENST00000338963 LARP1Q6PKG0 1096 aaKnown RBP4.45□□□□□ -1.7
NEDD4-201ENST00000338963 MCF2L2Q86YR7 1114 aa4.45□□□□□ -1.7
NEDD4-201ENST00000338963 GALNT6Q8NCL4 622 aa4.45□□□□□ -1.7
NEDD4-201ENST00000338963 SCYL1Q96KG9 808 aa4.45□□□□□ -1.7
NEDD4-201ENST00000338963 SETDB2Q96T68 719 aa4.45□□□□□ -1.7
NEDD4-201ENST00000338963 EHD4Q9H223 541 aa4.45□□□□□ -1.7
NEDD4-201ENST00000338963 GBA3Q9H227 469 aa4.45□□□□□ -1.7
NEDD4-201ENST00000338963 SAR1AQ9NR31 198 aa4.45□□□□□ -1.7
NEDD4-201ENST00000338963 ZBTB1Q9Y2K1 713 aa4.45□□□□□ -1.7
NEDD4-201ENST00000338963 hCG_2014768A0A024R1R8 64 aa4.45□□□□□ -1.7
NEDD4-201ENST00000338963 ITGB3P05106 788 aa4.45□□□□□ -1.7
NEDD4-201ENST00000338963 PPP1R2P41236 205 aa4.45□□□□□ -1.7
NEDD4-201ENST00000338963 NR1H2P55055 460 aa4.45□□□□□ -1.7
NEDD4-201ENST00000338963 DPYSQ14117 519 aa4.45□□□□□ -1.7
NEDD4-201ENST00000338963 NAALADL2Q58DX5 795 aa4.45□□□□□ -1.7
NEDD4-201ENST00000338963 DTHD1Q6ZMT9 781 aa4.45□□□□□ -1.7
NEDD4-201ENST00000338963 PDZD8Q8NEN9 1154 aa4.45□□□□□ -1.7
NEDD4-201ENST00000338963 OR7G1Q8NGA0 311 aa4.45□□□□□ -1.7
NEDD4-201ENST00000338963 CDHR1Q96JP9 859 aa4.45□□□□□ -1.7
NEDD4-201ENST00000338963 CAPZA3Q96KX2 299 aa4.45□□□□□ -1.7
NEDD4-201ENST00000338963 TRPV6Q9H1D0 765 aa4.45□□□□□ -1.7
NEDD4-201ENST00000338963 KCNMB3Q9NPA1 279 aa4.45□□□□□ -1.7
NEDD4-201ENST00000338963 METTL5Q9NRN9 209 aaKnown RBP4.45□□□□□ -1.7
NEDD4-201ENST00000338963 MKS1Q9NXB0 559 aa4.45□□□□□ -1.7
NEDD4-201ENST00000338963 STX18Q9P2W9 335 aaKnown RBP4.45□□□□□ -1.7
NEDD4-201ENST00000338963 NOVA2Q9UNW9 492 aaKnown RBP4.45□□□□□ -1.7
NEDD4-201ENST00000338963 NFE2L3Q9Y4A8 694 aa4.45□□□□□ -1.7
NEDD4-201ENST00000338963 MROH7-TTC4A0A0A0MT08 1334 aa4.45□□□□□ -1.7
NEDD4-201ENST00000338963 TMEM94Q12767 1356 aa4.45□□□□□ -1.7
NEDD4-201ENST00000338963 SYNJ2O15056 1496 aa4.45□□□□□ -1.7
NEDD4-201ENST00000338963 SLC22A1O15245 554 aa4.45□□□□□ -1.7
NEDD4-201ENST00000338963 DKC1O60832 514 aaKnown RBP eCLIP4.45□□□□□ -1.7
NEDD4-201ENST00000338963 TTKP33981 857 aa4.45□□□□□ -1.7
NEDD4-201ENST00000338963 TMPOP42166 694 aaKnown RBP4.45□□□□□ -1.7
NEDD4-201ENST00000338963 MAPKAPK2P49137 400 aa4.45□□□□□ -1.7
NEDD4-201ENST00000338963 FAM69CQ0P6D2 419 aa4.45□□□□□ -1.7
NEDD4-201ENST00000338963 SMUG1Q53HV7 270 aa4.45□□□□□ -1.7
NEDD4-201ENST00000338963 CCNJQ5T5M9 372 aa4.45□□□□□ -1.7
NEDD4-201ENST00000338963 LRRC8BQ6P9F7 803 aa4.45□□□□□ -1.7
NEDD4-201ENST00000338963 AAGABQ6PD74 315 aa4.45□□□□□ -1.7
NEDD4-201ENST00000338963 ARHGEF18Q6ZSZ5 1173 aa4.45□□□□□ -1.7
NEDD4-201ENST00000338963 NOX5Q96PH1 765 aa4.45□□□□□ -1.7
NEDD4-201ENST00000338963 MRPS26Q9BYN8 205 aaKnown RBP4.45□□□□□ -1.7
NEDD4-201ENST00000338963 LSG1Q9H089 658 aaKnown RBP4.45□□□□□ -1.7
NEDD4-201ENST00000338963 PHAXQ9H814 394 aaKnown RBP4.45□□□□□ -1.7
NEDD4-201ENST00000338963 ZMYM6O95789 1325 aa4.45□□□□□ -1.7
NEDD4-201ENST00000338963 CES2O00748 559 aa4.45□□□□□ -1.7
NEDD4-201ENST00000338963 FKBP6O75344 327 aa4.45□□□□□ -1.7
NEDD4-201ENST00000338963 EYA4O95677 639 aa4.45□□□□□ -1.7
NEDD4-201ENST00000338963 GNA14O95837 355 aa4.45□□□□□ -1.7
NEDD4-201ENST00000338963 RXRAP19793 462 aa4.45□□□□□ -1.7
NEDD4-201ENST00000338963 HOXD11P31277 338 aaPredicted RBP4.45□□□□□ -1.7
NEDD4-201ENST00000338963 EIF2B2P49770 351 aaKnown RBP4.45□□□□□ -1.7
NEDD4-201ENST00000338963 BCAP31P51572 246 aa4.45□□□□□ -1.7
NEDD4-201ENST00000338963 ALDH18A1P54886 795 aaKnown RBP4.45□□□□□ -1.7
NEDD4-201ENST00000338963 DSTNP60981 165 aa4.45□□□□□ -1.7
NEDD4-201ENST00000338963 ATP6V0D1P61421 351 aa4.45□□□□□ -1.7
NEDD4-201ENST00000338963 RELAQ04206 551 aa4.45□□□□□ -1.7
NEDD4-201ENST00000338963 MRPL28Q13084 256 aaKnown RBP4.45□□□□□ -1.7
NEDD4-201ENST00000338963 TRPC3Q13507 836 aa4.45□□□□□ -1.7
NEDD4-201ENST00000338963 COG2Q14746 738 aa4.45□□□□□ -1.7
NEDD4-201ENST00000338963 PRR23BQ6ZRT6 265 aa4.45□□□□□ -1.7
NEDD4-201ENST00000338963 ZC3H15Q8WU90 426 aaKnown RBP4.45□□□□□ -1.7
NEDD4-201ENST00000338963 GATA6Q92908 595 aa4.45□□□□□ -1.7
NEDD4-201ENST00000338963 FERMT2Q96AC1 680 aa4.45□□□□□ -1.7
NEDD4-201ENST00000338963 FAM136AQ96C01 138 aa4.45□□□□□ -1.7
NEDD4-201ENST00000338963 OSBPL6Q9BZF3 934 aa4.45□□□□□ -1.7
NEDD4-201ENST00000338963 ROPN1BQ9BZX4 212 aaPredicted RBP4.45□□□□□ -1.7
NEDD4-201ENST00000338963 LRRC27Q9C0I9 530 aa4.45□□□□□ -1.7
Retrieved 100 of 20,778 RNA–protein pairs in 64.7 ms