RNA–Protein interactions for RNA: ENST00000336838.10

CCDC88A-202, Transcript of coiled-coil domain containing 88A, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene CCDC88A, Length 9,505 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88A-202ENST00000336838 IFNAR2P48551 515 aa11.02□□□□□ -0.65
CCDC88A-202ENST00000336838 ARL13BQ3SXY8 428 aa11.02□□□□□ -0.65
CCDC88A-202ENST00000336838 ST7Q9NRC1 585 aa11.02□□□□□ -0.65
CCDC88A-202ENST00000336838 ZKSCAN7Q9P0L1 754 aaPredicted RBP11.02□□□□□ -0.65
CCDC88A-202ENST00000336838 TPX2Q9ULW0 747 aaKnown RBP11.02□□□□□ -0.65
CCDC88A-202ENST00000336838 PDXKO00764 312 aa11.02□□□□□ -0.65
CCDC88A-202ENST00000336838 GPC4O75487 556 aa11.02□□□□□ -0.65
CCDC88A-202ENST00000336838 PPARGP37231 505 aaPredicted RBP11.02□□□□□ -0.65
CCDC88A-202ENST00000336838 NUGGCQ68CJ6 796 aa11.02□□□□□ -0.65
CCDC88A-202ENST00000336838 CMTR1Q8N1G2 835 aaKnown RBP11.02□□□□□ -0.65
CCDC88A-202ENST00000336838 LRRC47Q8N1G4 583 aaKnown RBP11.02□□□□□ -0.65
CCDC88A-202ENST00000336838 SYT2Q8N9I0 419 aaPredicted RBP11.02□□□□□ -0.65
CCDC88A-202ENST00000336838 XXYLT1Q8NBI6 393 aa11.02□□□□□ -0.65
CCDC88A-202ENST00000336838 ROPN1BQ9BZX4 212 aaPredicted RBP11.02□□□□□ -0.65
CCDC88A-202ENST00000336838 ROPN1Q9HAT0 212 aaPredicted RBP11.02□□□□□ -0.65
CCDC88A-202ENST00000336838 POC1B-GALNT4F8VUJ3 575 aa11.02□□□□□ -0.65
CCDC88A-202ENST00000336838 PRPSAP2O60256 369 aa11.02□□□□□ -0.65
CCDC88A-202ENST00000336838 FTCDO95954 541 aa11.02□□□□□ -0.65
CCDC88A-202ENST00000336838 KRT10P13645 584 aa11.02□□□□□ -0.65
CCDC88A-202ENST00000336838 RFC1P35251 1148 aaPredicted RBP11.02□□□□□ -0.65
CCDC88A-202ENST00000336838 PRCPP42785 496 aa11.02□□□□□ -0.65
CCDC88A-202ENST00000336838 FOXP4Q8IVH2 680 aaPredicted RBP11.02□□□□□ -0.65
CCDC88A-202ENST00000336838 TLR3O15455 904 aaKnown RBP11.02□□□□□ -0.65
CCDC88A-202ENST00000336838 NXNQ6DKJ4 435 aa11.02□□□□□ -0.65
CCDC88A-202ENST00000336838 PPP1R37O75864 691 aa11.01□□□□□ -0.65
CCDC88A-202ENST00000336838 SLC18A3Q16572 532 aa11.01□□□□□ -0.65
CCDC88A-202ENST00000336838 CCDC144BQ3MJ40 725 aa11.01□□□□□ -0.65
CCDC88A-202ENST00000336838 NSMFQ6X4W1 530 aa11.01□□□□□ -0.65
CCDC88A-202ENST00000336838 KNDC1Q76NI1 1749 aa11.01□□□□□ -0.65
CCDC88A-202ENST00000336838 KPNA7A9QM74 516 aa11.01□□□□□ -0.65
CCDC88A-202ENST00000336838 DDX39AO00148 427 aaKnown RBP11.01□□□□□ -0.65
CCDC88A-202ENST00000336838 ENAHQ8N8S7 591 aaPredicted RBP11.01□□□□□ -0.65
CCDC88A-202ENST00000336838 TESPA1A2RU30 521 aaPredicted RBP11.01□□□□□ -0.65
CCDC88A-202ENST00000336838 PLS3P13797 630 aa11.01□□□□□ -0.65
CCDC88A-202ENST00000336838 GABPAQ06546 454 aa11.01□□□□□ -0.65
CCDC88A-202ENST00000336838 TFDP2Q14188 446 aa11.01□□□□□ -0.65
CCDC88A-202ENST00000336838 AGGF1Q8N302 714 aaeCLIP11.01□□□□□ -0.654e-6■□□□□ 10.7
CCDC88A-202ENST00000336838 TTLL11Q8NHH1 800 aa11.01□□□□□ -0.65
CCDC88A-202ENST00000336838 UVRAGQ9P2Y5 699 aa11.01□□□□□ -0.65
CCDC88A-202ENST00000336838 ZFP69BQ9UJL9 534 aa11.01□□□□□ -0.65
CCDC88A-202ENST00000336838 PALM3A6NDB9 673 aaPredicted RBP11.01□□□□□ -0.65
CCDC88A-202ENST00000336838 ZRANB2O95218 330 aaKnown RBP eCLIP11.01□□□□□ -0.65
CCDC88A-202ENST00000336838 E4F1Q66K89 784 aaPredicted RBP11.01□□□□□ -0.65
CCDC88A-202ENST00000336838 RFX6Q8HWS3 928 aa11.01□□□□□ -0.65
CCDC88A-202ENST00000336838 NLGN1Q8N2Q7 840 aa11.01□□□□□ -0.65
CCDC88A-202ENST00000336838 LARGE2Q8N3Y3 721 aa11.01□□□□□ -0.65
CCDC88A-202ENST00000336838 ADAMTS1Q9UHI8 967 aa11.01□□□□□ -0.65
CCDC88A-202ENST00000336838 TLK1Q9UKI8 766 aa11.01□□□□□ -0.65
CCDC88A-202ENST00000336838 JAG2Q9Y219 1238 aa11.01□□□□□ -0.65
CCDC88A-202ENST00000336838 ARL2BPQ9Y2Y0 163 aa11.01□□□□□ -0.65
CCDC88A-202ENST00000336838 EIF3DO15371 548 aaKnown RBP eCLIP11.01□□□□□ -0.65
CCDC88A-202ENST00000336838 CREB3O43889 395 aa11.01□□□□□ -0.65
CCDC88A-202ENST00000336838 CDH16O75309 829 aa11.01□□□□□ -0.65
CCDC88A-202ENST00000336838 ZSCAN20P17040 1043 aaPredicted RBP11.01□□□□□ -0.65
CCDC88A-202ENST00000336838 ADRA2BP18089 450 aa11.01□□□□□ -0.65
CCDC88A-202ENST00000336838 TAF1BQ53T94 588 aaPredicted RBP11.01□□□□□ -0.65
CCDC88A-202ENST00000336838 APOBEC2Q9Y235 224 aaKnown RBP11.01□□□□□ -0.65
CCDC88A-202ENST00000336838 MAD1L1Q9Y6D9 718 aa11.01□□□□□ -0.65
CCDC88A-202ENST00000336838 TAC1P20366 129 aa11.01□□□□□ -0.65
CCDC88A-202ENST00000336838 MX2P20592 715 aa11.01□□□□□ -0.65
CCDC88A-202ENST00000336838 JADE1Q6IE81 842 aa11.01□□□□□ -0.65
CCDC88A-202ENST00000336838 ZFXP17010 805 aaPredicted RBP11.01□□□□□ -0.65
CCDC88A-202ENST00000336838 CXCR5P32302 372 aa11.01□□□□□ -0.65
CCDC88A-202ENST00000336838 MECOMQ03112 1051 aa11.01□□□□□ -0.65
CCDC88A-202ENST00000336838 TTBK2Q6IQ55 1244 aa11.01□□□□□ -0.65
CCDC88A-202ENST00000336838 PLCD3Q8N3E9 789 aa11.01□□□□□ -0.65
CCDC88A-202ENST00000336838 MMGT1Q8N4V1 131 aa11.01□□□□□ -0.65
CCDC88A-202ENST00000336838 SCYL1Q96KG9 808 aa11.01□□□□□ -0.65
CCDC88A-202ENST00000336838 ANO3Q9BYT9 981 aa11.01□□□□□ -0.65
CCDC88A-202ENST00000336838 RHOBTB3O94955 611 aa11□□□□□ -0.65
CCDC88A-202ENST00000336838 SRGNP10124 158 aa11□□□□□ -0.65
CCDC88A-202ENST00000336838 CCND1P24385 295 aa11□□□□□ -0.65
CCDC88A-202ENST00000336838 MAGOHP61326 146 aaKnown RBP11□□□□□ -0.65
CCDC88A-202ENST00000336838 SATB1Q01826 763 aa11□□□□□ -0.65
CCDC88A-202ENST00000336838 SP4Q02446 784 aa11□□□□□ -0.65
CCDC88A-202ENST00000336838 ART3Q13508 389 aa11□□□□□ -0.65
CCDC88A-202ENST00000336838 PPP2R5DQ14738 602 aa11□□□□□ -0.65
CCDC88A-202ENST00000336838 KRT80Q6KB66 452 aa11□□□□□ -0.65
CCDC88A-202ENST00000336838 KCNF1Q9H3M0 494 aa11□□□□□ -0.65
CCDC88A-202ENST00000336838 RASSF10A6NK89 507 aa11□□□□□ -0.65
CCDC88A-202ENST00000336838 CHEK2O96017 543 aa11□□□□□ -0.65
CCDC88A-202ENST00000336838 RARS2Q5T160 578 aaKnown RBP11□□□□□ -0.65
CCDC88A-202ENST00000336838 PPWD1Q96BP3 646 aaKnown RBP11□□□□□ -0.65
CCDC88A-202ENST00000336838 SPC25Q9HBM1 224 aa11□□□□□ -0.65
CCDC88A-202ENST00000336838 TUFT1Q9NNX1 390 aa11□□□□□ -0.65
CCDC88A-202ENST00000336838 VPS39Q96JC1 886 aa11□□□□□ -0.65
CCDC88A-202ENST00000336838 TGS1Q96RS0 853 aaKnown RBP11□□□□□ -0.65
CCDC88A-202ENST00000336838 TBX3O15119 743 aa11□□□□□ -0.65
CCDC88A-202ENST00000336838 P4HA2O15460 535 aa11□□□□□ -0.65
CCDC88A-202ENST00000336838 KCNH2Q12809 1159 aa11□□□□□ -0.65
CCDC88A-202ENST00000336838 COASYQ13057 564 aa11□□□□□ -0.65
CCDC88A-202ENST00000336838 METTL16Q86W50 562 aaKnown RBP11□□□□□ -0.65
CCDC88A-202ENST00000336838 GRAMD1CQ8IYS0 662 aa11□□□□□ -0.65
CCDC88A-202ENST00000336838 IP6K2Q9UHH9 426 aa11□□□□□ -0.65
CCDC88A-202ENST00000336838 MYH11P35749 1972 aa11□□□□□ -0.65
CCDC88A-202ENST00000336838 COL3A1P02461 1466 aaPredicted RBP11□□□□□ -0.65
CCDC88A-202ENST00000336838 LRRIQ4A6NIV6 560 aa11□□□□□ -0.65
CCDC88A-202ENST00000336838 FAM107AO95990 144 aa11□□□□□ -0.65
CCDC88A-202ENST00000336838 DPYDQ12882 1025 aa11□□□□□ -0.65
CCDC88A-202ENST00000336838 APBB2Q92870 758 aa11□□□□□ -0.65
Retrieved 100 of 20,778 RNA–protein pairs in 42.1 ms