RNA–Protein interactions for RNA: ENST00000330374.6

VMA21-201, Transcript of VMA21, vacuolar ATPase assembly factor, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene VMA21, Length 4,717 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VMA21-201ENST00000330374 TMEM106CQ9BVX2 250 aa8.56□□□□□ -1.04
VMA21-201ENST00000330374 DNAJC17Q9NVM6 304 aaKnown RBP8.56□□□□□ -1.04
VMA21-201ENST00000330374 TMEM59LQ9UK28 342 aa8.56□□□□□ -1.04
VMA21-201ENST00000330374 PTPN22Q9Y2R2 807 aa8.56□□□□□ -1.04
VMA21-201ENST00000330374 COL4A1P02462 1669 aa8.56□□□□□ -1.04
VMA21-201ENST00000330374 NUP98P52948 1817 aa8.56□□□□□ -1.04
VMA21-201ENST00000330374 DOCK2Q92608 1830 aa8.56□□□□□ -1.04
VMA21-201ENST00000330374 GOLGB1Q14789 3259 aaKnown RBP8.56□□□□□ -1.04
VMA21-201ENST00000330374 A8MUI8 341 aa8.56□□□□□ -1.04
VMA21-201ENST00000330374 MYBP10242 640 aa8.56□□□□□ -1.04
VMA21-201ENST00000330374 SLC16A2P36021 539 aa8.56□□□□□ -1.04
VMA21-201ENST00000330374 INTS5Q6P9B9 1019 aaKnown RBP8.56□□□□□ -1.04
VMA21-201ENST00000330374 CCDC50Q8IVM0 306 aa8.56□□□□□ -1.04
VMA21-201ENST00000330374 TEX11Q8IYF3 940 aa8.56□□□□□ -1.04
VMA21-201ENST00000330374 ANKRD42Q8N9B4 389 aa8.56□□□□□ -1.04
VMA21-201ENST00000330374 RBM46Q8TBY0 533 aaKnown RBP8.56□□□□□ -1.04
VMA21-201ENST00000330374 EPS8L3Q8TE67 593 aaKnown RBP8.56□□□□□ -1.04
VMA21-201ENST00000330374 CUL5Q93034 780 aa8.56□□□□□ -1.04
VMA21-201ENST00000330374 DNAJC19Q96DA6 116 aa8.56□□□□□ -1.04
VMA21-201ENST00000330374 SWAP70Q9UH65 585 aa8.56□□□□□ -1.04
VMA21-201ENST00000330374 C21orf2O43822 256 aa8.55□□□□□ -1.04
VMA21-201ENST00000330374 ADCY7P51828 1080 aa8.55□□□□□ -1.04
VMA21-201ENST00000330374 SLC29A2Q14542 456 aa8.55□□□□□ -1.04
VMA21-201ENST00000330374 IFI16Q16666 785 aaKnown RBP8.55□□□□□ -1.04
VMA21-201ENST00000330374 PARP10Q53GL7 1025 aa8.55□□□□□ -1.04
VMA21-201ENST00000330374 AGBL2Q5U5Z8 902 aa8.55□□□□□ -1.04
VMA21-201ENST00000330374 LRCH2Q5VUJ6 765 aa8.55□□□□□ -1.04
VMA21-201ENST00000330374 IRF2BP2Q7Z5L9 587 aa8.55□□□□□ -1.04
VMA21-201ENST00000330374 MICAL1Q8TDZ2 1067 aa8.55□□□□□ -1.04
VMA21-201ENST00000330374 SCFD1Q8WVM8 642 aa8.55□□□□□ -1.04
VMA21-201ENST00000330374 CEP95Q96GE4 821 aa8.55□□□□□ -1.04
VMA21-201ENST00000330374 FAM167BQ9BTA0 163 aa8.55□□□□□ -1.04
VMA21-201ENST00000330374 TRIM6Q9C030 488 aaPredicted RBP8.55□□□□□ -1.04
VMA21-201ENST00000330374 GANQ9H2C0 597 aa8.55□□□□□ -1.04
VMA21-201ENST00000330374 ERVK-5Q9HDB9 667 aa8.55□□□□□ -1.04
VMA21-201ENST00000330374 FAM120AQ9NZB2 1118 aaKnown RBP eCLIP8.55□□□□□ -1.042e-8■■■■□ 21
VMA21-201ENST00000330374 ARMCX3Q9UH62 379 aaPredicted RBP8.55□□□□□ -1.04
VMA21-201ENST00000330374 DDX25Q9UHL0 483 aaKnown RBP8.55□□□□□ -1.04
VMA21-201ENST00000330374 CASZ1Q86V15 1759 aa8.55□□□□□ -1.04
VMA21-201ENST00000330374 FLOT1O75955 427 aa8.55□□□□□ -1.04
VMA21-201ENST00000330374 LDHBP07195 334 aaKnown RBP8.55□□□□□ -1.04
VMA21-201ENST00000330374 RASA1P20936 1047 aa8.55□□□□□ -1.04
VMA21-201ENST00000330374 GCKP35557 465 aa8.55□□□□□ -1.04
VMA21-201ENST00000330374 DR1Q01658 176 aa8.55□□□□□ -1.04
VMA21-201ENST00000330374 EMC10Q5UCC4 262 aa8.55□□□□□ -1.04
VMA21-201ENST00000330374 CCDC65Q8IXS2 484 aa8.55□□□□□ -1.04
VMA21-201ENST00000330374 FBXO25Q8TCJ0 367 aa8.55□□□□□ -1.04
VMA21-201ENST00000330374 ACTRT1Q8TDG2 376 aa8.55□□□□□ -1.04
VMA21-201ENST00000330374 MTMR9Q96QG7 549 aa8.55□□□□□ -1.04
VMA21-201ENST00000330374 EDEM3Q9BZQ6 932 aa8.55□□□□□ -1.04
VMA21-201ENST00000330374 FAM129AQ9BZQ8 928 aa8.55□□□□□ -1.04
VMA21-201ENST00000330374 AMFRQ9UKV5 643 aa8.55□□□□□ -1.04
VMA21-201ENST00000330374 PPP1R9AQ9ULJ8 1098 aa8.55□□□□□ -1.04
VMA21-201ENST00000330374 PCDHA12Q9UN75 941 aa8.55□□□□□ -1.04
VMA21-201ENST00000330374 RTCBQ9Y3I0 505 aaKnown RBP8.55□□□□□ -1.04
VMA21-201ENST00000330374 POTEFA5A3E0 1075 aa8.55□□□□□ -1.04
VMA21-201ENST00000330374 SFI1A8K8P3 1242 aa8.55□□□□□ -1.04
VMA21-201ENST00000330374 CLGNO14967 610 aa8.55□□□□□ -1.04
VMA21-201ENST00000330374 DIAPH2O60879 1101 aa8.55□□□□□ -1.04
VMA21-201ENST00000330374 ANP32DO95626 131 aa8.55□□□□□ -1.04
VMA21-201ENST00000330374 PLA2G4BP0C869 781 aa8.55□□□□□ -1.04
VMA21-201ENST00000330374 POTEIP0CG38 1075 aa8.55□□□□□ -1.04
VMA21-201ENST00000330374 GALCP54803 685 aa8.55□□□□□ -1.04
VMA21-201ENST00000330374 PABPC4Q13310 644 aaKnown RBP eCLIP8.55□□□□□ -1.046e-8■■■□□ 15.2
VMA21-201ENST00000330374 POTEGQ6S5H5 508 aa8.55□□□□□ -1.04
VMA21-201ENST00000330374 POTEEQ6S8J3 1075 aa8.55□□□□□ -1.04
VMA21-201ENST00000330374 LRRC57Q8N9N7 239 aa8.55□□□□□ -1.04
VMA21-201ENST00000330374 ANKIB1Q9P2G1 1089 aa8.55□□□□□ -1.04
VMA21-201ENST00000330374 AGAP1Q9UPQ3 857 aa8.55□□□□□ -1.04
VMA21-201ENST00000330374 THRAP3Q9Y2W1 955 aaKnown RBP8.55□□□□□ -1.04
VMA21-201ENST00000330374 DAAM1Q9Y4D1 1078 aa8.55□□□□□ -1.04
VMA21-201ENST00000330374 UBOX5O94941 541 aa8.55□□□□□ -1.04
VMA21-201ENST00000330374 MYBL1P10243 752 aa8.55□□□□□ -1.04
VMA21-201ENST00000330374 CASP4P49662 377 aa8.55□□□□□ -1.04
VMA21-201ENST00000330374 MAP2K1Q02750 393 aaPredicted RBP8.55□□□□□ -1.04
VMA21-201ENST00000330374 XRCC4Q13426 336 aa8.55□□□□□ -1.04
VMA21-201ENST00000330374 SBK1Q52WX2 424 aa8.55□□□□□ -1.04
VMA21-201ENST00000330374 ERMARDQ5T6L9 678 aa8.55□□□□□ -1.04
VMA21-201ENST00000330374 GDAP1Q8TB36 358 aa8.55□□□□□ -1.04
VMA21-201ENST00000330374 SPDL1Q96EA4 605 aa8.55□□□□□ -1.04
VMA21-201ENST00000330374 SEMA4AQ9H3S1 761 aa8.55□□□□□ -1.04
VMA21-201ENST00000330374 KCNK9Q9NPC2 374 aa8.55□□□□□ -1.04
VMA21-201ENST00000330374 BSDC1Q9NW68 430 aaPredicted RBP8.55□□□□□ -1.04
VMA21-201ENST00000330374 AIPL1Q9NZN9 384 aa8.55□□□□□ -1.04
VMA21-201ENST00000330374 GGA2Q9UJY4 613 aa8.55□□□□□ -1.04
VMA21-201ENST00000330374 TRIM33Q9UPN9 1127 aa8.55□□□□□ -1.04
VMA21-201ENST00000330374 PMS2P54278 862 aa8.54□□□□□ -1.04
VMA21-201ENST00000330374 ARHGAP44Q17R89 818 aa8.54□□□□□ -1.04
VMA21-201ENST00000330374 ZCWPW2Q504Y3 356 aa8.54□□□□□ -1.04
VMA21-201ENST00000330374 VPS36Q86VN1 386 aa8.54□□□□□ -1.04
VMA21-201ENST00000330374 HOOK3Q86VS8 718 aa8.54□□□□□ -1.04
VMA21-201ENST00000330374 SPICE1Q8N0Z3 855 aa8.54□□□□□ -1.04
VMA21-201ENST00000330374 AGAP11Q8TF27 550 aa8.54□□□□□ -1.04
VMA21-201ENST00000330374 GCNT4Q9P109 453 aa8.54□□□□□ -1.04
VMA21-201ENST00000330374 ADAMTSL3P82987 1691 aa8.54□□□□□ -1.04
VMA21-201ENST00000330374 XRCC5P13010 732 aaKnown RBP8.54□□□□□ -1.04
VMA21-201ENST00000330374 PLCG2P16885 1265 aa8.54□□□□□ -1.04
VMA21-201ENST00000330374 CDK8P49336 464 aa8.54□□□□□ -1.04
VMA21-201ENST00000330374 RPS8P62241 208 aaKnown RBP8.54□□□□□ -1.04
VMA21-201ENST00000330374 PICALMQ13492 652 aa8.54□□□□□ -1.04
Retrieved 100 of 20,778 RNA–protein pairs in 30.3 ms