RNA–Protein interactions for RNA: ENST00000328923.7

SHMT2-201, Transcript of serine hydroxymethyltransferase 2, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene SHMT2, Length 2,537 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT2-201ENST00000328923 STKLD1Q8NE28 680 aa12.82□□□□□ -0.36
SHMT2-201ENST00000328923 USP33Q8TEY7 942 aa12.82□□□□□ -0.36
SHMT2-201ENST00000328923 HAUS1Q96CS2 278 aa12.82□□□□□ -0.36
SHMT2-201ENST00000328923 TAOK3Q9H2K8 898 aa12.82□□□□□ -0.36
SHMT2-201ENST00000328923 ETNK1Q9HBU6 452 aa12.82□□□□□ -0.36
SHMT2-201ENST00000328923 RWDD2AQ9UIY3 292 aa12.82□□□□□ -0.36
SHMT2-201ENST00000328923 FBXL5Q9UKA1 691 aa12.82□□□□□ -0.36
SHMT2-201ENST00000328923 TDRKHQ9Y2W6 561 aaKnown RBP12.82□□□□□ -0.36
SHMT2-201ENST00000328923 BTBD18B2RXH4 712 aa12.81□□□□□ -0.36
SHMT2-201ENST00000328923 TACC1O75410 805 aa12.81□□□□□ -0.36
SHMT2-201ENST00000328923 ECHS1P30084 290 aa12.81□□□□□ -0.36
SHMT2-201ENST00000328923 GALK1P51570 392 aa12.81□□□□□ -0.36
SHMT2-201ENST00000328923 ADARP55265 1226 aaKnown RBP12.81□□□□□ -0.36
SHMT2-201ENST00000328923 RHBDL3P58872 404 aa12.81□□□□□ -0.36
SHMT2-201ENST00000328923 FITM2Q8N6M3 262 aa12.81□□□□□ -0.36
SHMT2-201ENST00000328923 ENDOVQ8N8Q3 282 aaKnown RBP12.81□□□□□ -0.36
SHMT2-201ENST00000328923 IGDCC4Q8TDY8 1250 aa12.81□□□□□ -0.36
SHMT2-201ENST00000328923 PAGE5Q96GU1 130 aa12.81□□□□□ -0.36
SHMT2-201ENST00000328923 RAB3IPQ96QF0 476 aaPredicted RBP12.81□□□□□ -0.36
SHMT2-201ENST00000328923 CSRNP2Q9H175 543 aa12.81□□□□□ -0.36
SHMT2-201ENST00000328923 LY9Q9HBG7 655 aa12.81□□□□□ -0.36
SHMT2-201ENST00000328923 LUC7LQ9NQ29 371 aaKnown RBP12.81□□□□□ -0.36
SHMT2-201ENST00000328923 N6AMT1Q9Y5N5 214 aa12.81□□□□□ -0.36
SHMT2-201ENST00000328923 TIAM2Q8IVF5 1701 aa12.81□□□□□ -0.36
SHMT2-201ENST00000328923 THSD7AQ9UPZ6 1657 aa12.81□□□□□ -0.36
SHMT2-201ENST00000328923 CHD4Q14839 1912 aa12.81□□□□□ -0.36
SHMT2-201ENST00000328923 A0A1W2PQC6 194 aa12.81□□□□□ -0.36
SHMT2-201ENST00000328923 STARD3NLO95772 234 aa12.81□□□□□ -0.36
SHMT2-201ENST00000328923 BMP15O95972 392 aa12.81□□□□□ -0.36
SHMT2-201ENST00000328923 OAS1P00973 400 aaKnown RBP12.81□□□□□ -0.36
SHMT2-201ENST00000328923 CASP1P29466 404 aa12.81□□□□□ -0.36
SHMT2-201ENST00000328923 FLT3P36888 993 aa12.81□□□□□ -0.36
SHMT2-201ENST00000328923 IGHMBP2P38935 993 aaKnown RBP12.81□□□□□ -0.36
SHMT2-201ENST00000328923 UBXN1Q04323 297 aa12.81□□□□□ -0.36
SHMT2-201ENST00000328923 TTF1Q15361 905 aaPredicted RBP12.81□□□□□ -0.36
SHMT2-201ENST00000328923 USH1GQ495M9 461 aa12.81□□□□□ -0.36
SHMT2-201ENST00000328923 LIN52Q52LA3 116 aa12.81□□□□□ -0.36
SHMT2-201ENST00000328923 PHLDB3Q6NSJ2 640 aa12.81□□□□□ -0.36
SHMT2-201ENST00000328923 DZIP1Q86YF9 867 aaKnown RBP12.81□□□□□ -0.36
SHMT2-201ENST00000328923 SAMD3Q8N6K7 520 aa12.81□□□□□ -0.36
SHMT2-201ENST00000328923 RSPH1Q8WYR4 309 aa12.81□□□□□ -0.36
SHMT2-201ENST00000328923 TAF4BQ92750 862 aa12.81□□□□□ -0.36
SHMT2-201ENST00000328923 CATSPER2Q96P56 530 aa12.81□□□□□ -0.36
SHMT2-201ENST00000328923 LUC7L2Q9Y383 392 aaKnown RBP12.81□□□□□ -0.36
SHMT2-201ENST00000328923 USP15Q9Y4E8 981 aaPredicted RBP12.81□□□□□ -0.36
SHMT2-201ENST00000328923 A0A0G2JS52 829 aa12.8□□□□□ -0.36
SHMT2-201ENST00000328923 NPHP3-ACAD11A0A0J9YXS1 232 aa12.8□□□□□ -0.36
SHMT2-201ENST00000328923 DYTNA2CJ06 578 aa12.8□□□□□ -0.36
SHMT2-201ENST00000328923 RAD51CO43502 376 aa12.8□□□□□ -0.36
SHMT2-201ENST00000328923 PDGFRBP09619 1106 aa12.8□□□□□ -0.36
SHMT2-201ENST00000328923 TROVE2P10155 538 aaKnown RBP eCLIP12.8□□□□□ -0.36
SHMT2-201ENST00000328923 SKIP12755 728 aa12.8□□□□□ -0.36
SHMT2-201ENST00000328923 SMARCA1P28370 1054 aa12.8□□□□□ -0.36
SHMT2-201ENST00000328923 SERPINB3P29508 390 aa12.8□□□□□ -0.36
SHMT2-201ENST00000328923 CYLC1P35663 651 aaPredicted RBP12.8□□□□□ -0.36
SHMT2-201ENST00000328923 DNA2P51530 1060 aa12.8□□□□□ -0.36
SHMT2-201ENST00000328923 DIXDC1Q155Q3 683 aa12.8□□□□□ -0.36
SHMT2-201ENST00000328923 GRAMD4Q6IC98 578 aa12.8□□□□□ -0.36
SHMT2-201ENST00000328923 KRT26Q7Z3Y9 468 aa12.8□□□□□ -0.36
SHMT2-201ENST00000328923 SPATA24Q86W54 205 aa12.8□□□□□ -0.36
SHMT2-201ENST00000328923 DDX42Q86XP3 938 aaKnown RBP eCLIP12.8□□□□□ -0.36
SHMT2-201ENST00000328923 TBC1D10CQ8IV04 446 aa12.8□□□□□ -0.36
SHMT2-201ENST00000328923 FAM13CQ8NE31 585 aa12.8□□□□□ -0.36
SHMT2-201ENST00000328923 TLCD1Q96CP7 247 aa12.8□□□□□ -0.36
SHMT2-201ENST00000328923 MPP4Q96JB8 637 aa12.8□□□□□ -0.36
SHMT2-201ENST00000328923 POLR3CQ9BUI4 534 aaPredicted RBP12.8□□□□□ -0.36
SHMT2-201ENST00000328923 SLC26A6Q9BXS9 759 aa12.8□□□□□ -0.36
SHMT2-201ENST00000328923 PUS7LQ9H0K6 701 aaKnown RBP12.8□□□□□ -0.36
SHMT2-201ENST00000328923 NHEJ1Q9H9Q4 299 aaPredicted RBP12.8□□□□□ -0.36
SHMT2-201ENST00000328923 DDX25Q9UHL0 483 aaKnown RBP12.8□□□□□ -0.36
SHMT2-201ENST00000328923 ZNF330Q9Y3S2 320 aaPredicted RBP12.8□□□□□ -0.36
SHMT2-201ENST00000328923 DOT1LQ8TEK3 1739 aa12.8□□□□□ -0.36
SHMT2-201ENST00000328923 STIP1P31948 543 aaKnown RBP12.8□□□□□ -0.36
SHMT2-201ENST00000328923 RCAN1P53805 252 aa12.8□□□□□ -0.36
SHMT2-201ENST00000328923 ERVK-9P63128 1117 aa12.8□□□□□ -0.36
SHMT2-201ENST00000328923 FKBP4Q02790 459 aaKnown RBP eCLIP12.8□□□□□ -0.36
SHMT2-201ENST00000328923 MEA1Q16626 185 aa12.8□□□□□ -0.36
SHMT2-201ENST00000328923 TSR1Q2NL82 804 aaKnown RBP12.8□□□□□ -0.36
SHMT2-201ENST00000328923 TCP11X2Q5H9J9 407 aa12.8□□□□□ -0.36
SHMT2-201ENST00000328923 DEFB132Q7Z7B7 95 aa12.8□□□□□ -0.36
SHMT2-201ENST00000328923 TRIM22Q8IYM9 498 aa12.8□□□□□ -0.36
SHMT2-201ENST00000328923 PYM1Q9BRP8 204 aaKnown RBP12.8□□□□□ -0.36
SHMT2-201ENST00000328923 TCHPQ9BT92 498 aa12.8□□□□□ -0.36
SHMT2-201ENST00000328923 DDX24Q9GZR7 859 aaKnown RBP eCLIP12.8□□□□□ -0.366e-7■■□□□ 14.2
SHMT2-201ENST00000328923 NEUROG2Q9H2A3 272 aa12.8□□□□□ -0.36
SHMT2-201ENST00000328923 ADAM7Q9H2U9 754 aa12.8□□□□□ -0.36
SHMT2-201ENST00000328923 CTNND2Q9UQB3 1225 aa12.8□□□□□ -0.36
SHMT2-201ENST00000328923 TIMM22Q9Y584 194 aa12.8□□□□□ -0.36
SHMT2-201ENST00000328923 PCDHB6Q9Y5E3 794 aa12.8□□□□□ -0.36
SHMT2-201ENST00000328923 SMIM23A6NLE4 172 aa12.79□□□□□ -0.36
SHMT2-201ENST00000328923 ZNF263O14978 683 aa12.79□□□□□ -0.36
SHMT2-201ENST00000328923 ENTPD5O75356 428 aa12.79□□□□□ -0.36
SHMT2-201ENST00000328923 CCNB1P14635 433 aa12.79□□□□□ -0.36
SHMT2-201ENST00000328923 HLFQ16534 295 aa12.79□□□□□ -0.36
SHMT2-201ENST00000328923 CFAP157Q5JU67 520 aa12.79□□□□□ -0.36
SHMT2-201ENST00000328923 RBM26Q5T8P6 1007 aaKnown RBP12.79□□□□□ -0.36
SHMT2-201ENST00000328923 LRRC43Q8N309 656 aa12.79□□□□□ -0.36
SHMT2-201ENST00000328923 RIBC1Q8N443 379 aaPredicted RBP12.79□□□□□ -0.36
SHMT2-201ENST00000328923 PDCD7Q8N8D1 485 aaKnown RBP12.79□□□□□ -0.36
SHMT2-201ENST00000328923 SCG3Q8WXD2 468 aaKnown RBP12.79□□□□□ -0.36
Retrieved 100 of 20,778 RNA–protein pairs in 15.4 ms