RNA–Protein interactions for RNA: ENST00000323701.10

USP39-201, Transcript of ubiquitin specific peptidase 39, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene USP39, Length 2,177 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP39-201ENST00000323701 PPP4R3CPQ6ZMV5 832 aa20.28■□□□□ 0.84
USP39-201ENST00000323701 TRIM59Q8IWR1 403 aa20.28■□□□□ 0.84
USP39-201ENST00000323701 TTYH3Q9C0H2 523 aa20.28■□□□□ 0.84
USP39-201ENST00000323701 XPNPEP1Q9NQW7 623 aa20.28■□□□□ 0.84
USP39-201ENST00000323701 AGPAT5Q9NUQ2 364 aa20.28■□□□□ 0.84
USP39-201ENST00000323701 UCHL5Q9Y5K5 329 aaKnown RBP eCLIP20.28■□□□□ 0.847e-6■■□□□ 12.1
USP39-201ENST00000323701 ARID2Q68CP9 1835 aa20.28■□□□□ 0.84
USP39-201ENST00000323701 IGKV6D-21A0A0A0MT36 114 aa20.28■□□□□ 0.84
USP39-201ENST00000323701 K7ENM7 598 aa20.28■□□□□ 0.84
USP39-201ENST00000323701 IGF2BP3O00425 579 aaKnown RBP eCLIP20.28■□□□□ 0.84
USP39-201ENST00000323701 MARSP56192 900 aaKnown RBP20.28■□□□□ 0.84
USP39-201ENST00000323701 HSDL1Q3SXM5 330 aa20.28■□□□□ 0.84
USP39-201ENST00000323701 RASAL3Q86YV0 1011 aa20.28■□□□□ 0.84
USP39-201ENST00000323701 MORC4Q8TE76 937 aa20.28■□□□□ 0.84
USP39-201ENST00000323701 PANX2Q96RD6 677 aa20.28■□□□□ 0.84
USP39-201ENST00000323701 ERGIC2Q96RQ1 377 aa20.28■□□□□ 0.84
USP39-201ENST00000323701 KIFC3Q9BVG8 833 aa20.28■□□□□ 0.84
USP39-201ENST00000323701 PDLIM7Q9NR12 457 aa20.28■□□□□ 0.84
USP39-201ENST00000323701 SIK3Q9Y2K2 1263 aa20.28■□□□□ 0.84
USP39-201ENST00000323701 PLXNB2O15031 1838 aa20.27■□□□□ 0.84
USP39-201ENST00000323701 SOWAHDA6NJG2 315 aa20.27■□□□□ 0.84
USP39-201ENST00000323701 PEX3P56589 373 aa20.27■□□□□ 0.84
USP39-201ENST00000323701 ZNF792Q3KQV3 632 aa20.27■□□□□ 0.84
USP39-201ENST00000323701 CCDC112Q8NEF3 446 aa20.27■□□□□ 0.84
USP39-201ENST00000323701 GTF3C2Q8WUA4 911 aaPredicted RBP20.27■□□□□ 0.84
USP39-201ENST00000323701 C16orf45Q96MC5 204 aaPredicted RBP20.27■□□□□ 0.84
USP39-201ENST00000323701 ZNF302Q9NR11 478 aa20.27■□□□□ 0.84
USP39-201ENST00000323701 CYP26B1Q9NR63 512 aa20.27■□□□□ 0.84
USP39-201ENST00000323701 TRPM7Q96QT4 1865 aa20.27■□□□□ 0.84
USP39-201ENST00000323701 CETN3O15182 167 aa20.27■□□□□ 0.83
USP39-201ENST00000323701 SLC16A4O15374 487 aa20.27■□□□□ 0.83
USP39-201ENST00000323701 TGFB3P10600 412 aa20.27■□□□□ 0.83
USP39-201ENST00000323701 ZNF157P51786 506 aaPredicted RBP20.27■□□□□ 0.83
USP39-201ENST00000323701 CCDC62Q6P9F0 684 aa20.27■□□□□ 0.83
USP39-201ENST00000323701 TOGARAM2Q6ZUX3 1019 aa20.27■□□□□ 0.83
USP39-201ENST00000323701 ARMCX2Q7L311 632 aa20.27■□□□□ 0.83
USP39-201ENST00000323701 ABHD10Q9NUJ1 306 aa20.27■□□□□ 0.83
USP39-201ENST00000323701 LARSQ9P2J5 1176 aaKnown RBP20.27■□□□□ 0.83
USP39-201ENST00000323701 CALUO43852 315 aaPredicted RBP20.26■□□□□ 0.83
USP39-201ENST00000323701 STX10O60499 249 aa20.26■□□□□ 0.83
USP39-201ENST00000323701 KRT9P35527 623 aa20.26■□□□□ 0.83
USP39-201ENST00000323701 GCLCP48506 637 aaPredicted RBP20.26■□□□□ 0.83
USP39-201ENST00000323701 CCNA1P78396 465 aa20.26■□□□□ 0.83
USP39-201ENST00000323701 NEDD9Q14511 834 aa20.26■□□□□ 0.83
USP39-201ENST00000323701 MTERF2Q49AM1 385 aa20.26■□□□□ 0.83
USP39-201ENST00000323701 GJC2Q5T442 439 aaPredicted RBP20.26■□□□□ 0.83
USP39-201ENST00000323701 METTL7BQ6UX53 244 aa20.26■□□□□ 0.83
USP39-201ENST00000323701 OTUD6AQ7L8S5 288 aa20.26■□□□□ 0.83
USP39-201ENST00000323701 SAPCD2Q86UD0 394 aa20.26■□□□□ 0.83
USP39-201ENST00000323701 TRIM50Q86XT4 487 aa20.26■□□□□ 0.83
USP39-201ENST00000323701 PLXNA1Q9UIW2 1896 aa20.25■□□□□ 0.83
USP39-201ENST00000323701 TPM2P07951 284 aa20.25■□□□□ 0.83
USP39-201ENST00000323701 TCF7P36402 384 aaPredicted RBP20.25■□□□□ 0.83
USP39-201ENST00000323701 APBA1Q02410 837 aa20.25■□□□□ 0.83
USP39-201ENST00000323701 KCNMA1Q12791 1236 aa20.25■□□□□ 0.83
USP39-201ENST00000323701 RAD9BQ6WBX8 426 aa20.25■□□□□ 0.83
USP39-201ENST00000323701 CEP89Q96ST8 783 aa20.25■□□□□ 0.83
USP39-201ENST00000323701 AGPAT3Q9NRZ7 376 aa20.25■□□□□ 0.83
USP39-201ENST00000323701 PCDHB13Q9Y5F0 798 aa20.25■□□□□ 0.83
USP39-201ENST00000323701 HSP90AA2PQ14568 343 aaPredicted RBP20.25■□□□□ 0.83
USP39-201ENST00000323701 XKR3Q5GH77 459 aa20.25■□□□□ 0.83
USP39-201ENST00000323701 HAUS6Q7Z4H7 955 aa20.25■□□□□ 0.83
USP39-201ENST00000323701 GPR142Q7Z601 462 aa20.25■□□□□ 0.83
USP39-201ENST00000323701 CNGA4Q8IV77 575 aa20.25■□□□□ 0.83
USP39-201ENST00000323701 DRC1Q96MC2 740 aa20.25■□□□□ 0.83
USP39-201ENST00000323701 PARK7Q99497 189 aaKnown RBP20.25■□□□□ 0.83
USP39-201ENST00000323701 MLXIPQ9HAP2 919 aa20.25■□□□□ 0.83
USP39-201ENST00000323701 FAM207AQ9NSI2 230 aaPredicted RBP20.25■□□□□ 0.83
USP39-201ENST00000323701 CPA4Q9UI42 421 aa20.25■□□□□ 0.83
USP39-201ENST00000323701 ARHGAP6O43182 974 aa20.24■□□□□ 0.83
USP39-201ENST00000323701 OATP04181 439 aa20.24■□□□□ 0.83
USP39-201ENST00000323701 NPTX2P47972 431 aa20.24■□□□□ 0.83
USP39-201ENST00000323701 CELF3Q5SZQ8 465 aaKnown RBP20.24■□□□□ 0.83
USP39-201ENST00000323701 FKBP15Q5T1M5 1219 aa20.24■□□□□ 0.83
USP39-201ENST00000323701 ZSWIM2Q8NEG5 633 aa20.24■□□□□ 0.83
USP39-201ENST00000323701 PPP1R13BQ96KQ4 1090 aa20.24■□□□□ 0.83
USP39-201ENST00000323701 GPR20Q99678 358 aa20.24■□□□□ 0.83
USP39-201ENST00000323701 DESI2Q9BSY9 194 aa20.24■□□□□ 0.83
USP39-201ENST00000323701 GBP3Q9H0R5 595 aa20.24■□□□□ 0.83
USP39-201ENST00000323701 KCND1Q9NSA2 647 aa20.24■□□□□ 0.83
USP39-201ENST00000323701 CAPN11Q9UMQ6 739 aa20.24■□□□□ 0.83
USP39-201ENST00000323701 R3HCC1Q9Y3T6 440 aaKnown RBP20.24■□□□□ 0.83
USP39-201ENST00000323701 ADGRA3Q8IWK6 1321 aa20.24■□□□□ 0.83
USP39-201ENST00000323701 GNA14O95837 355 aa20.24■□□□□ 0.83
USP39-201ENST00000323701 TRIM21P19474 475 aaKnown RBP20.24■□□□□ 0.83
USP39-201ENST00000323701 KCNJ6P48051 423 aa20.24■□□□□ 0.83
USP39-201ENST00000323701 BORCS6Q96GS4 357 aa20.24■□□□□ 0.83
USP39-201ENST00000323701 CRACR2AQ9BSW2 395 aa20.24■□□□□ 0.83
USP39-201ENST00000323701 UTP18Q9Y5J1 556 aaKnown RBP eCLIP20.24■□□□□ 0.83
USP39-201ENST00000323701 FECHP22830 423 aa20.23■□□□□ 0.83
USP39-201ENST00000323701 NCKAP1LP55160 1127 aa20.23■□□□□ 0.83
USP39-201ENST00000323701 GTF2BQ00403 316 aa20.23■□□□□ 0.83
USP39-201ENST00000323701 WDR59Q6PJI9 974 aa20.23■□□□□ 0.83
USP39-201ENST00000323701 TMEM161BQ8NDZ6 487 aa20.23■□□□□ 0.83
USP39-201ENST00000323701 PCMTD1Q96MG8 357 aaPredicted RBP20.23■□□□□ 0.83
USP39-201ENST00000323701 CHP1Q99653 195 aa20.23■□□□□ 0.83
USP39-201ENST00000323701 DMAC2Q9NW81 257 aa20.23■□□□□ 0.83
USP39-201ENST00000323701 UBE4BO95155 1302 aa20.23■□□□□ 0.83
USP39-201ENST00000323701 DOCK3Q8IZD9 2030 aa20.23■□□□□ 0.83
USP39-201ENST00000323701 A0A0U1RQJ8 604 aa20.22■□□□□ 0.83
Retrieved 100 of 20,778 RNA–protein pairs in 18.3 ms