RNA–Protein interactions for RNA: ENST00000319172.9

TMEM39A-201, Transcript of transmembrane protein 39A, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene TMEM39A, Length 4,369 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TMEM39A-201ENST00000319172 ZNF541Q9H0D2 1346 aa10.1□□□□□ -0.79
TMEM39A-201ENST00000319172 PDXKO00764 312 aa10.1□□□□□ -0.79
TMEM39A-201ENST00000319172 ZBTB39O15060 712 aa10.1□□□□□ -0.79
TMEM39A-201ENST00000319172 CLDN3O15551 220 aa10.1□□□□□ -0.79
TMEM39A-201ENST00000319172 EGFRP00533 1210 aa10.1□□□□□ -0.79
TMEM39A-201ENST00000319172 SERPING1P05155 500 aa10.1□□□□□ -0.79
TMEM39A-201ENST00000319172 PPM1FP49593 454 aaPredicted RBP10.1□□□□□ -0.79
TMEM39A-201ENST00000319172 PRKCEQ02156 737 aa10.1□□□□□ -0.79
TMEM39A-201ENST00000319172 SEPT7Q16181 437 aaKnown RBP10.1□□□□□ -0.79
TMEM39A-201ENST00000319172 NAA35Q5VZE5 725 aa10.1□□□□□ -0.79
TMEM39A-201ENST00000319172 E4F1Q66K89 784 aaPredicted RBP10.1□□□□□ -0.79
TMEM39A-201ENST00000319172 ALKBH5Q6P6C2 394 aaKnown RBP10.1□□□□□ -0.79
TMEM39A-201ENST00000319172 PNMA8AQ86V59 439 aaPredicted RBP10.1□□□□□ -0.79
TMEM39A-201ENST00000319172 CCDC25Q86WR0 208 aa10.1□□□□□ -0.79
TMEM39A-201ENST00000319172 CCDC170Q8IYT3 715 aa10.1□□□□□ -0.79
TMEM39A-201ENST00000319172 KRT222Q8N1A0 295 aa10.1□□□□□ -0.79
TMEM39A-201ENST00000319172 TC2NQ8N9U0 490 aa10.1□□□□□ -0.79
TMEM39A-201ENST00000319172 CCDC114Q96M63 670 aa10.1□□□□□ -0.79
TMEM39A-201ENST00000319172 PCDHA13Q9Y5I0 950 aa10.1□□□□□ -0.79
TMEM39A-201ENST00000319172 ADGRG1Q9Y653 693 aa10.1□□□□□ -0.79
TMEM39A-201ENST00000319172 BZW2Q9Y6E2 419 aaKnown RBP10.1□□□□□ -0.79
TMEM39A-201ENST00000319172 USP54Q70EL1 1684 aa10.1□□□□□ -0.79
TMEM39A-201ENST00000319172 EML1O00423 815 aa10.1□□□□□ -0.79
TMEM39A-201ENST00000319172 BMP6P22004 513 aa10.1□□□□□ -0.79
TMEM39A-201ENST00000319172 HOXA7P31268 230 aaPredicted RBP10.1□□□□□ -0.79
TMEM39A-201ENST00000319172 PTK2Q05397 1052 aa10.1□□□□□ -0.79
TMEM39A-201ENST00000319172 GFPT1Q06210 699 aaPredicted RBP10.1□□□□□ -0.79
TMEM39A-201ENST00000319172 POLR3CQ9BUI4 534 aaPredicted RBP10.1□□□□□ -0.79
TMEM39A-201ENST00000319172 MOV10L1Q9BXT6 1211 aaKnown RBP10.1□□□□□ -0.79
TMEM39A-201ENST00000319172 CDC23Q9UJX2 597 aa10.1□□□□□ -0.79
TMEM39A-201ENST00000319172 MTUS1Q9ULD2 1270 aa10.1□□□□□ -0.79
TMEM39A-201ENST00000319172 HYOU1Q9Y4L1 999 aa10.1□□□□□ -0.79
TMEM39A-201ENST00000319172 ACTN1P12814 892 aa10.09□□□□□ -0.79
TMEM39A-201ENST00000319172 ACTN2P35609 894 aa10.09□□□□□ -0.79
TMEM39A-201ENST00000319172 SARSP49591 514 aaKnown RBP10.09□□□□□ -0.79
TMEM39A-201ENST00000319172 ZNF157P51786 506 aaPredicted RBP10.09□□□□□ -0.79
TMEM39A-201ENST00000319172 YARSP54577 528 aaKnown RBP10.09□□□□□ -0.79
TMEM39A-201ENST00000319172 SEMA3FQ13275 785 aa10.09□□□□□ -0.79
TMEM39A-201ENST00000319172 TUBB2AQ13885 445 aa10.09□□□□□ -0.79
TMEM39A-201ENST00000319172 VGLL4Q14135 290 aa10.09□□□□□ -0.79
TMEM39A-201ENST00000319172 TAF1CQ15572 869 aaPredicted RBP10.09□□□□□ -0.79
TMEM39A-201ENST00000319172 E2F4Q16254 413 aa10.09□□□□□ -0.79
TMEM39A-201ENST00000319172 MAPK6Q16659 721 aa10.09□□□□□ -0.79
TMEM39A-201ENST00000319172 XKR3Q5GH77 459 aa10.09□□□□□ -0.79
TMEM39A-201ENST00000319172 SCARA5Q6ZMJ2 495 aa10.09□□□□□ -0.79
TMEM39A-201ENST00000319172 UBL4BQ8N7F7 174 aa10.09□□□□□ -0.79
TMEM39A-201ENST00000319172 CHST13Q8NET6 341 aa10.09□□□□□ -0.79
TMEM39A-201ENST00000319172 HAS1Q92839 578 aa10.09□□□□□ -0.79
TMEM39A-201ENST00000319172 TUBB2BQ9BVA1 445 aa10.09□□□□□ -0.79
TMEM39A-201ENST00000319172 BLOC1S4Q9NUP1 217 aa10.09□□□□□ -0.79
TMEM39A-201ENST00000319172 GYPCP04921 128 aa10.09□□□□□ -0.79
TMEM39A-201ENST00000319172 DSG3P32926 999 aa10.09□□□□□ -0.79
TMEM39A-201ENST00000319172 VAMP7P51809 220 aa10.09□□□□□ -0.79
TMEM39A-201ENST00000319172 MESDQ14696 234 aa10.09□□□□□ -0.79
TMEM39A-201ENST00000319172 PPP1R7Q15435 360 aa10.09□□□□□ -0.79
TMEM39A-201ENST00000319172 OPTNQ96CV9 577 aa10.09□□□□□ -0.79
TMEM39A-201ENST00000319172 FAM167AQ96KS9 214 aa10.09□□□□□ -0.79
TMEM39A-201ENST00000319172 MTMR9Q96QG7 549 aa10.09□□□□□ -0.79
TMEM39A-201ENST00000319172 CEP72Q9P209 647 aa10.09□□□□□ -0.79
TMEM39A-201ENST00000319172 SBDSQ9Y3A5 250 aaKnown RBP eCLIP10.09□□□□□ -0.79
TMEM39A-201ENST00000319172 EMSYQ7Z589 1322 aa10.09□□□□□ -0.79
TMEM39A-201ENST00000319172 A0A1W2PQC6 194 aa10.09□□□□□ -0.79
TMEM39A-201ENST00000319172 TMEM150BA6NC51 233 aa10.09□□□□□ -0.79
TMEM39A-201ENST00000319172 SNHG28P0DPA3 235 aa10.09□□□□□ -0.79
TMEM39A-201ENST00000319172 LACTBP83111 547 aaPredicted RBP10.09□□□□□ -0.79
TMEM39A-201ENST00000319172 Q4G0T1 1027 aa10.09□□□□□ -0.79
TMEM39A-201ENST00000319172 ZNF394Q53GI3 561 aa10.09□□□□□ -0.79
TMEM39A-201ENST00000319172 TTI2Q6NXR4 508 aa10.09□□□□□ -0.79
TMEM39A-201ENST00000319172 SYCE1Q8N0S2 351 aa10.09□□□□□ -0.79
TMEM39A-201ENST00000319172 RNF149Q8NC42 400 aa10.09□□□□□ -0.79
TMEM39A-201ENST00000319172 SEPT1Q8WYJ6 367 aa10.09□□□□□ -0.79
TMEM39A-201ENST00000319172 P2RX7Q99572 595 aaKnown RBP10.09□□□□□ -0.79
TMEM39A-201ENST00000319172 RASAL2Q9UJF2 1139 aa10.09□□□□□ -0.79
TMEM39A-201ENST00000319172 ODF2LQ9ULJ1 636 aa10.09□□□□□ -0.79
TMEM39A-201ENST00000319172 PLCH1Q4KWH8 1693 aa10.08□□□□□ -0.8
TMEM39A-201ENST00000319172 PITPNM2Q9BZ72 1349 aa10.08□□□□□ -0.8
TMEM39A-201ENST00000319172 HSF2BPO75031 334 aa10.08□□□□□ -0.8
TMEM39A-201ENST00000319172 DGAT1O75907 488 aa10.08□□□□□ -0.8
TMEM39A-201ENST00000319172 MMP14P50281 582 aa10.08□□□□□ -0.8
TMEM39A-201ENST00000319172 ACTR2P61160 394 aa10.08□□□□□ -0.8
TMEM39A-201ENST00000319172 TAF12Q16514 161 aa10.08□□□□□ -0.8
TMEM39A-201ENST00000319172 WHAMMP3Q1A5X7 153 aa10.08□□□□□ -0.8
TMEM39A-201ENST00000319172 DLK2Q6UY11 383 aa10.08□□□□□ -0.8
TMEM39A-201ENST00000319172 HOOK3Q86VS8 718 aa10.08□□□□□ -0.8
TMEM39A-201ENST00000319172 SEMA6BQ9H3T3 888 aa10.08□□□□□ -0.8
TMEM39A-201ENST00000319172 PXMP2Q9NR77 195 aa10.08□□□□□ -0.8
TMEM39A-201ENST00000319172 NSFP46459 744 aaKnown RBP10.08□□□□□ -0.8
TMEM39A-201ENST00000319172 MDM2Q00987 491 aaPredicted RBP10.08□□□□□ -0.8
TMEM39A-201ENST00000319172 CNTN2Q02246 1040 aa10.08□□□□□ -0.8
TMEM39A-201ENST00000319172 GIT2Q14161 759 aa10.08□□□□□ -0.8
TMEM39A-201ENST00000319172 KIAA0895Q8NCT3 520 aa10.08□□□□□ -0.8
TMEM39A-201ENST00000319172 CRYBG1Q9Y4K1 1723 aa10.08□□□□□ -0.8
TMEM39A-201ENST00000319172 MYH14Q7Z406 1995 aaKnown RBP10.08□□□□□ -0.8
TMEM39A-201ENST00000319172 SMIM23A6NLE4 172 aa10.08□□□□□ -0.8
TMEM39A-201ENST00000319172 TUBB4BP68371 445 aa10.08□□□□□ -0.8
TMEM39A-201ENST00000319172 NFX1Q12986 1120 aaKnown RBP10.08□□□□□ -0.8
TMEM39A-201ENST00000319172 NAA30Q147X3 362 aaPredicted RBP10.08□□□□□ -0.8
TMEM39A-201ENST00000319172 NPY5RQ15761 445 aa10.08□□□□□ -0.8
TMEM39A-201ENST00000319172 RANBP17Q9H2T7 1088 aaKnown RBP10.08□□□□□ -0.8
TMEM39A-201ENST00000319172 PARP2Q9UGN5 583 aa10.08□□□□□ -0.8
Retrieved 100 of 20,778 RNA–protein pairs in 26.3 ms