RNA–Protein interactions for RNA: ENST00000299185.12

DEPDC4-201, Transcript of DEP domain containing 4, humanhuman

TSL 1 (best)

Gene DEPDC4, Length 768 nt, Biotype nonsense mediated decay.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
DEPDC4-201ENST00000299185 TECP42680 631 aa7.31□□□□□ -1.24
DEPDC4-201ENST00000299185 TRAPPC10P48553 1259 aa7.31□□□□□ -1.24
DEPDC4-201ENST00000299185 FXR1P51114 621 aaKnown RBP eCLIP7.31□□□□□ -1.24
DEPDC4-201ENST00000299185 USP11P51784 963 aa7.31□□□□□ -1.24
DEPDC4-201ENST00000299185 CHMP4BP1P59074 171 aa7.31□□□□□ -1.24
DEPDC4-201ENST00000299185 SETQ01105 290 aaPredicted RBP7.31□□□□□ -1.24
DEPDC4-201ENST00000299185 TNFAIP2Q03169 654 aa7.31□□□□□ -1.24
DEPDC4-201ENST00000299185 ECM1Q16610 540 aa7.31□□□□□ -1.24
DEPDC4-201ENST00000299185 NBPF20Q3BBV1 942 aa7.31□□□□□ -1.24
DEPDC4-201ENST00000299185 SLC9C1Q4G0N8 1177 aa7.31□□□□□ -1.24
DEPDC4-201ENST00000299185 AXDND1Q5T1B0 1012 aaPredicted RBP7.31□□□□□ -1.24
DEPDC4-201ENST00000299185 PPP4R3AQ6IN85 833 aa7.31□□□□□ -1.24
DEPDC4-201ENST00000299185 SHC4Q6S5L8 630 aa7.31□□□□□ -1.24
DEPDC4-201ENST00000299185 MOXD1Q6UVY6 613 aa7.31□□□□□ -1.24
DEPDC4-201ENST00000299185 CCDC60Q8IWA6 550 aaPredicted RBP7.31□□□□□ -1.24
DEPDC4-201ENST00000299185 SAMD3Q8N6K7 520 aa7.31□□□□□ -1.24
DEPDC4-201ENST00000299185 SCFD2Q8WU76 684 aa7.31□□□□□ -1.24
DEPDC4-201ENST00000299185 ACDQ96AP0 544 aa7.31□□□□□ -1.24
DEPDC4-201ENST00000299185 DYDC2Q96IM9 177 aa7.31□□□□□ -1.24
DEPDC4-201ENST00000299185 SPATA32Q96LK8 384 aa7.31□□□□□ -1.24
DEPDC4-201ENST00000299185 IWS1Q96ST2 819 aa7.31□□□□□ -1.24
DEPDC4-201ENST00000299185 PCYT2Q99447 389 aa7.31□□□□□ -1.24
DEPDC4-201ENST00000299185 SH2D3AQ9BRG2 576 aa7.31□□□□□ -1.24
DEPDC4-201ENST00000299185 MMTAG2Q9BU76 263 aaKnown RBP7.31□□□□□ -1.24
DEPDC4-201ENST00000299185 TEKT3Q9BXF9 490 aa7.31□□□□□ -1.24
DEPDC4-201ENST00000299185 XRN2Q9H0D6 950 aaKnown RBP eCLIP7.31□□□□□ -1.24
DEPDC4-201ENST00000299185 JPH1Q9HDC5 661 aaPredicted RBP7.31□□□□□ -1.24
DEPDC4-201ENST00000299185 POLR3EQ9NVU0 708 aa7.31□□□□□ -1.24
DEPDC4-201ENST00000299185 SLC5A4Q9NY91 659 aa7.31□□□□□ -1.24
DEPDC4-201ENST00000299185 MAP3K20Q9NYL2 800 aaKnown RBP7.31□□□□□ -1.24
DEPDC4-201ENST00000299185 RGL1Q9NZL6 768 aa7.31□□□□□ -1.24
DEPDC4-201ENST00000299185 FKBPLQ9UIM3 349 aa7.31□□□□□ -1.24
DEPDC4-201ENST00000299185 PCDHA7Q9UN72 937 aa7.31□□□□□ -1.24
DEPDC4-201ENST00000299185 TCHHQ07283 1943 aa7.31□□□□□ -1.24
DEPDC4-201ENST00000299185 GSTTP1A0A1W2PQM5 241 aa7.3□□□□□ -1.24
DEPDC4-201ENST00000299185 RBM47A0AV96 593 aaKnown RBP7.3□□□□□ -1.24
DEPDC4-201ENST00000299185 ZBTB39O15060 712 aa7.3□□□□□ -1.24
DEPDC4-201ENST00000299185 DYNC1LI2O43237 492 aaPredicted RBP7.3□□□□□ -1.24
DEPDC4-201ENST00000299185 MED24O75448 989 aa7.3□□□□□ -1.24
DEPDC4-201ENST00000299185 YEATS4O95619 227 aa7.3□□□□□ -1.24
DEPDC4-201ENST00000299185 GH1P01241 217 aa7.3□□□□□ -1.24
DEPDC4-201ENST00000299185 MYL3P08590 195 aa7.3□□□□□ -1.24
DEPDC4-201ENST00000299185 CCL5P13501 91 aa7.3□□□□□ -1.24
DEPDC4-201ENST00000299185 AKR1A1P14550 325 aa7.3□□□□□ -1.24
DEPDC4-201ENST00000299185 LIG1P18858 919 aa7.3□□□□□ -1.24
DEPDC4-201ENST00000299185 ME1P48163 572 aa7.3□□□□□ -1.24
DEPDC4-201ENST00000299185 ACTR2P61160 394 aa7.3□□□□□ -1.24
DEPDC4-201ENST00000299185 PSMC6P62333 389 aa7.3□□□□□ -1.24
DEPDC4-201ENST00000299185 CTTNQ14247 550 aaKnown RBP7.3□□□□□ -1.24
DEPDC4-201ENST00000299185 TTLL4Q14679 1199 aa7.3□□□□□ -1.24
DEPDC4-201ENST00000299185 SLC39A14Q15043 492 aa7.3□□□□□ -1.24
DEPDC4-201ENST00000299185 KARSQ15046 597 aaKnown RBP7.3□□□□□ -1.24
DEPDC4-201ENST00000299185 HSDL1Q3SXM5 330 aa7.3□□□□□ -1.24
DEPDC4-201ENST00000299185 GNPTABQ3T906 1256 aa7.3□□□□□ -1.24
DEPDC4-201ENST00000299185 CELF3Q5SZQ8 465 aaKnown RBP7.3□□□□□ -1.24
DEPDC4-201ENST00000299185 PLA2G4FQ68DD2 849 aa7.3□□□□□ -1.24
DEPDC4-201ENST00000299185 XRRA1Q6P2D8 792 aa7.3□□□□□ -1.24
DEPDC4-201ENST00000299185 FBXO46Q6PJ61 603 aaPredicted RBP7.3□□□□□ -1.24
DEPDC4-201ENST00000299185 NIPA1Q7RTP0 329 aa7.3□□□□□ -1.24
DEPDC4-201ENST00000299185 MIER3Q7Z3K6 550 aa7.3□□□□□ -1.24
DEPDC4-201ENST00000299185 KCNK18Q7Z418 384 aa7.3□□□□□ -1.24
DEPDC4-201ENST00000299185 GRAMD1CQ8IYS0 662 aa7.3□□□□□ -1.24
DEPDC4-201ENST00000299185 FSIP1Q8NA03 581 aa7.3□□□□□ -1.24
DEPDC4-201ENST00000299185 DIS3LQ8TF46 1054 aaKnown RBP7.3□□□□□ -1.24
DEPDC4-201ENST00000299185 TRAPPC12Q8WVT3 735 aa7.3□□□□□ -1.24
DEPDC4-201ENST00000299185 EPSTI1Q96J88 318 aa7.3□□□□□ -1.24
DEPDC4-201ENST00000299185 SPATA33Q96N06 139 aa7.3□□□□□ -1.24
DEPDC4-201ENST00000299185 DEFB118Q96PH6 123 aa7.3□□□□□ -1.24
DEPDC4-201ENST00000299185 PNMA5Q96PV4 448 aa7.3□□□□□ -1.24
DEPDC4-201ENST00000299185 PANK2Q9BZ23 570 aa7.3□□□□□ -1.24
DEPDC4-201ENST00000299185 ABHD16BQ9H3Z7 469 aa7.3□□□□□ -1.24
DEPDC4-201ENST00000299185 TTC12Q9H892 705 aaPredicted RBP7.3□□□□□ -1.24
DEPDC4-201ENST00000299185 SLC9A2Q9UBY0 812 aa7.3□□□□□ -1.24
DEPDC4-201ENST00000299185 GNEQ9Y223 722 aaKnown RBP7.3□□□□□ -1.24
DEPDC4-201ENST00000299185 ELP1O95163 1332 aa7.29□□□□□ -1.24
DEPDC4-201ENST00000299185 SEPT4O43236 478 aa7.29□□□□□ -1.24
DEPDC4-201ENST00000299185 ZNF862O60290 1169 aa7.29□□□□□ -1.24
DEPDC4-201ENST00000299185 ADAMTS4O75173 837 aa7.29□□□□□ -1.24
DEPDC4-201ENST00000299185 LGALS2P05162 132 aa7.29□□□□□ -1.24
DEPDC4-201ENST00000299185 MMP3P08254 477 aa7.29□□□□□ -1.24
DEPDC4-201ENST00000299185 C6orf222P0C671 652 aaPredicted RBP7.29□□□□□ -1.24
DEPDC4-201ENST00000299185 SUPT20HL2P0C7V6 817 aa7.29□□□□□ -1.24
DEPDC4-201ENST00000299185 CASP1P29466 404 aa7.29□□□□□ -1.24
DEPDC4-201ENST00000299185 RNF144AP50876 292 aaPredicted RBP7.29□□□□□ -1.24
DEPDC4-201ENST00000299185 PTK2Q05397 1052 aa7.29□□□□□ -1.24
DEPDC4-201ENST00000299185 GRB10Q13322 594 aa7.29□□□□□ -1.24
DEPDC4-201ENST00000299185 DUSP28Q4G0W2 176 aa7.29□□□□□ -1.24
DEPDC4-201ENST00000299185 MCTP2Q6DN12 878 aa7.29□□□□□ -1.24
DEPDC4-201ENST00000299185 B3GNT9Q6UX72 402 aa7.29□□□□□ -1.24
DEPDC4-201ENST00000299185 PRICKLE2Q7Z3G6 844 aa7.29□□□□□ -1.24
DEPDC4-201ENST00000299185 DHX37Q8IY37 1157 aaKnown RBP7.29□□□□□ -1.24
DEPDC4-201ENST00000299185 PDILTQ8N807 584 aa7.29□□□□□ -1.24
DEPDC4-201ENST00000299185 KDF1Q8NAX2 398 aaPredicted RBP7.29□□□□□ -1.24
DEPDC4-201ENST00000299185 SNX29Q8TEQ0 813 aa7.29□□□□□ -1.24
DEPDC4-201ENST00000299185 ZNF333Q96JL9 665 aa7.29□□□□□ -1.24
DEPDC4-201ENST00000299185 MPHOSPH6Q99547 160 aaKnown RBP7.29□□□□□ -1.24
DEPDC4-201ENST00000299185 GPR20Q99678 358 aa7.29□□□□□ -1.24
DEPDC4-201ENST00000299185 SDF4Q9BRK5 362 aa7.29□□□□□ -1.24
DEPDC4-201ENST00000299185 MLXIPQ9HAP2 919 aa7.29□□□□□ -1.24
DEPDC4-201ENST00000299185 XPNPEP3Q9NQH7 507 aa7.29□□□□□ -1.24
Retrieved 100 of 20,778 RNA–protein pairs in 76.9 ms