RNA–Protein interactions for RNA: ENST00000263398.10

CD44-201, Transcript of CD44 molecule (Indian blood group), humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene CD44, Length 4,589 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-201ENST00000263398 HDAC11Q96DB2 347 aa11.55□□□□□ -0.56
CD44-201ENST00000263398 RBM41Q96IZ5 413 aaKnown RBP11.55□□□□□ -0.56
CD44-201ENST00000263398 PITPNM3Q9BZ71 974 aa11.55□□□□□ -0.56
CD44-201ENST00000263398 EPC1Q9H2F5 836 aa11.55□□□□□ -0.56
CD44-201ENST00000263398 KCNF1Q9H3M0 494 aa11.55□□□□□ -0.56
CD44-201ENST00000263398 DNAJC17Q9NVM6 304 aaKnown RBP11.55□□□□□ -0.56
CD44-201ENST00000263398 TLK1Q9UKI8 766 aa11.55□□□□□ -0.56
CD44-201ENST00000263398 MROH2AA6NES4 1674 aa11.55□□□□□ -0.56
CD44-201ENST00000263398 MROH7-TTC4A0A0A0MT08 1334 aa11.55□□□□□ -0.56
CD44-201ENST00000263398 ADGRB1O14514 1584 aa11.55□□□□□ -0.56
CD44-201ENST00000263398 ZBED1O96006 694 aa11.55□□□□□ -0.56
CD44-201ENST00000263398 KRT3P12035 628 aa11.55□□□□□ -0.56
CD44-201ENST00000263398 MYO1EQ12965 1108 aa11.55□□□□□ -0.56
CD44-201ENST00000263398 SPARCL1Q14515 664 aa11.55□□□□□ -0.56
CD44-201ENST00000263398 JADE1Q6IE81 842 aa11.55□□□□□ -0.56
CD44-201ENST00000263398 RCSD1Q6JBY9 416 aa11.55□□□□□ -0.56
CD44-201ENST00000263398 TUBE1Q9UJT0 475 aa11.55□□□□□ -0.56
CD44-201ENST00000263398 MID2Q9UJV3 735 aa11.55□□□□□ -0.56
CD44-201ENST00000263398 REREQ9P2R6 1566 aa11.54□□□□□ -0.56
CD44-201ENST00000263398 USP17L10C9JJH3 530 aa11.54□□□□□ -0.56
CD44-201ENST00000263398 GUCY1A2P33402 732 aa11.54□□□□□ -0.56
CD44-201ENST00000263398 CAV1Q03135 178 aa11.54□□□□□ -0.56
CD44-201ENST00000263398 MTF1Q14872 753 aa11.54□□□□□ -0.56
CD44-201ENST00000263398 EAPPQ56P03 285 aaPredicted RBP11.54□□□□□ -0.56
CD44-201ENST00000263398 MIGA2Q7L4E1 593 aa11.54□□□□□ -0.56
CD44-201ENST00000263398 BBS5Q8N3I7 341 aa11.54□□□□□ -0.56
CD44-201ENST00000263398 PLA2G12BQ9BX93 195 aa11.54□□□□□ -0.56
CD44-201ENST00000263398 LRRC4Q9HBW1 653 aa11.54□□□□□ -0.56
CD44-201ENST00000263398 HDAC6Q9UBN7 1215 aa11.54□□□□□ -0.56
CD44-201ENST00000263398 ZNF609O15014 1411 aa11.54□□□□□ -0.56
CD44-201ENST00000263398 MYO3AQ8NEV4 1616 aa11.54□□□□□ -0.56
CD44-201ENST00000263398 KRT37O76014 449 aa11.54□□□□□ -0.56
CD44-201ENST00000263398 ESRRAP11474 423 aaPredicted RBP11.54□□□□□ -0.56
CD44-201ENST00000263398 SNAP25P60880 206 aa11.54□□□□□ -0.56
CD44-201ENST00000263398 NR1H3Q13133 447 aa11.54□□□□□ -0.56
CD44-201ENST00000263398 PODNQ7Z5L7 613 aa11.54□□□□□ -0.56
CD44-201ENST00000263398 ZBTB33Q86T24 672 aa11.54□□□□□ -0.56
CD44-201ENST00000263398 DPP9Q86TI2 863 aa11.54□□□□□ -0.56
CD44-201ENST00000263398 BUD13Q9BRD0 619 aaKnown RBP eCLIP11.54□□□□□ -0.56
CD44-201ENST00000263398 DDX47Q9H0S4 455 aaKnown RBP11.54□□□□□ -0.56
CD44-201ENST00000263398 TAF1DQ9H5J8 278 aaPredicted RBP11.54□□□□□ -0.56
CD44-201ENST00000263398 QTRT2Q9H974 415 aaKnown RBP11.54□□□□□ -0.56
CD44-201ENST00000263398 TBC1D22BQ9NU19 505 aa11.54□□□□□ -0.56
CD44-201ENST00000263398 TMEM260Q9NX78 707 aa11.54□□□□□ -0.56
CD44-201ENST00000263398 EPS15L1Q9UBC2 864 aa11.54□□□□□ -0.56
CD44-201ENST00000263398 IQGAP1P46940 1657 aa11.54□□□□□ -0.56
CD44-201ENST00000263398 TARSL2A2RTX5 802 aaKnown RBP11.54□□□□□ -0.56
CD44-201ENST00000263398 SKIP12755 728 aa11.54□□□□□ -0.56
CD44-201ENST00000263398 CRKP46108 304 aa11.54□□□□□ -0.56
CD44-201ENST00000263398 KPNA2P52292 529 aaKnown RBP11.54□□□□□ -0.56
CD44-201ENST00000263398 STX1BP61266 288 aa11.54□□□□□ -0.56
CD44-201ENST00000263398 RNF207Q6ZRF8 634 aa11.54□□□□□ -0.56
CD44-201ENST00000263398 SPATA4Q8NEY3 305 aa11.54□□□□□ -0.56
CD44-201ENST00000263398 FAM84BQ96KN1 310 aaPredicted RBP11.54□□□□□ -0.56
CD44-201ENST00000263398 LRGUKQ96M69 825 aa11.54□□□□□ -0.56
CD44-201ENST00000263398 TRIM9Q9C026 710 aa11.54□□□□□ -0.56
CD44-201ENST00000263398 BAG5Q9UL15 447 aa11.54□□□□□ -0.56
CD44-201ENST00000263398 ESYT3A0FGR9 886 aa11.53□□□□□ -0.56
CD44-201ENST00000263398 GOLGA8CPA6NN73 597 aa11.53□□□□□ -0.56
CD44-201ENST00000263398 WDR64B1ANS9 1081 aa11.53□□□□□ -0.56
CD44-201ENST00000263398 TTC4O95801 387 aa11.53□□□□□ -0.56
CD44-201ENST00000263398 DRAP1Q14919 205 aaPredicted RBP11.53□□□□□ -0.56
CD44-201ENST00000263398 MMS22LQ6ZRQ5 1243 aa11.53□□□□□ -0.56
CD44-201ENST00000263398 TBC1D1Q86TI0 1168 aaPredicted RBP11.53□□□□□ -0.56
CD44-201ENST00000263398 TTC13Q8NBP0 860 aa11.53□□□□□ -0.56
CD44-201ENST00000263398 IGDCC4Q8TDY8 1250 aa11.53□□□□□ -0.56
CD44-201ENST00000263398 HVCN1Q96D96 273 aa11.53□□□□□ -0.56
CD44-201ENST00000263398 FAM193BQ96PV7 902 aaPredicted RBP11.53□□□□□ -0.56
CD44-201ENST00000263398 SLITRK6Q9H5Y7 841 aa11.53□□□□□ -0.56
CD44-201ENST00000263398 RPF1Q9H9Y2 349 aaKnown RBP11.53□□□□□ -0.56
CD44-201ENST00000263398 COL15A1P39059 1388 aa11.53□□□□□ -0.56
CD44-201ENST00000263398 PLEKHG2Q9H7P9 1386 aa11.53□□□□□ -0.56
CD44-201ENST00000263398 FRMPD1Q5SYB0 1578 aa11.53□□□□□ -0.56
CD44-201ENST00000263398 WDR91A4D1P6 747 aa11.53□□□□□ -0.56
CD44-201ENST00000263398 ANKRD65E5RJM6 399 aa11.53□□□□□ -0.56
CD44-201ENST00000263398 TDP2O95551 362 aa11.53□□□□□ -0.56
CD44-201ENST00000263398 USP11P51784 963 aa11.53□□□□□ -0.56
CD44-201ENST00000263398 OSTNP61366 133 aa11.53□□□□□ -0.56
CD44-201ENST00000263398 MTMR1Q13613 665 aa11.53□□□□□ -0.56
CD44-201ENST00000263398 PLCB4Q15147 1175 aa11.53□□□□□ -0.56
CD44-201ENST00000263398 QRICH1Q2TAL8 776 aa11.53□□□□□ -0.56
CD44-201ENST00000263398 NBPF9Q3BBW0 867 aa11.53□□□□□ -0.56
CD44-201ENST00000263398 ZNF667Q5HYK9 610 aa11.53□□□□□ -0.56
CD44-201ENST00000263398 BZW1Q7L1Q6 419 aaKnown RBP11.53□□□□□ -0.56
CD44-201ENST00000263398 GSPT2Q8IYD1 628 aaKnown RBP11.53□□□□□ -0.56
CD44-201ENST00000263398 SDCCAG3Q96C92 435 aa11.53□□□□□ -0.56
CD44-201ENST00000263398 SAYSD1Q9NPB0 183 aa11.53□□□□□ -0.56
CD44-201ENST00000263398 GINM1Q9NU53 330 aa11.53□□□□□ -0.56
CD44-201ENST00000263398 POTEFA5A3E0 1075 aa11.53□□□□□ -0.56
CD44-201ENST00000263398 DCTN3O75935 186 aa11.53□□□□□ -0.56
CD44-201ENST00000263398 POTEIP0CG38 1075 aa11.53□□□□□ -0.56
CD44-201ENST00000263398 RFX1P22670 979 aa11.53□□□□□ -0.56
CD44-201ENST00000263398 CHRNA3P32297 505 aa11.53□□□□□ -0.56
CD44-201ENST00000263398 CACNB3P54284 484 aa11.53□□□□□ -0.56
CD44-201ENST00000263398 MAGOHP61326 146 aaKnown RBP11.53□□□□□ -0.56
CD44-201ENST00000263398 COG7P83436 770 aa11.53□□□□□ -0.56
CD44-201ENST00000263398 TFDP2Q14188 446 aa11.53□□□□□ -0.56
CD44-201ENST00000263398 PDIA5Q14554 519 aa11.53□□□□□ -0.56
CD44-201ENST00000263398 ATG16L1Q676U5 607 aa11.53□□□□□ -0.56
CD44-201ENST00000263398 POTEGQ6S5H5 508 aa11.53□□□□□ -0.56
Retrieved 100 of 20,778 RNA–protein pairs in 19 ms