RNA–Protein interactions for RNA: ENST00000011700.10

VPS13D-201, Transcript of vacuolar protein sorting 13 homolog D, humanhuman

TSL 1 (best)

Gene VPS13D, Length 10,969 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13D-201ENST00000011700 PCDHGB4Q9UN71 923 aa6.48□□□□□ -1.37
VPS13D-201ENST00000011700 NSFL1CQ9UNZ2 370 aaKnown RBP6.48□□□□□ -1.37
VPS13D-201ENST00000011700 GPTP24298 496 aa6.48□□□□□ -1.37
VPS13D-201ENST00000011700 NNMTP40261 264 aa6.48□□□□□ -1.37
VPS13D-201ENST00000011700 TMEM245Q9H330 911 aa6.48□□□□□ -1.37
VPS13D-201ENST00000011700 KANSL2Q9H9L4 492 aa6.48□□□□□ -1.37
VPS13D-201ENST00000011700 TTLL3Q9Y4R7 772 aa6.48□□□□□ -1.37
VPS13D-201ENST00000011700 ZFYVE16Q7Z3T8 1539 aa6.48□□□□□ -1.37
VPS13D-201ENST00000011700 TBC1D12O60347 775 aa6.48□□□□□ -1.37
VPS13D-201ENST00000011700 ITGA6P23229 1130 aa6.48□□□□□ -1.37
VPS13D-201ENST00000011700 PMS2P54278 862 aa6.48□□□□□ -1.37
VPS13D-201ENST00000011700 PICALMQ13492 652 aa6.48□□□□□ -1.37
VPS13D-201ENST00000011700 KBTBD12Q3ZCT8 623 aa6.48□□□□□ -1.37
VPS13D-201ENST00000011700 SYT2Q8N9I0 419 aaPredicted RBP6.48□□□□□ -1.37
VPS13D-201ENST00000011700 RNF169Q8NCN4 708 aa6.48□□□□□ -1.37
VPS13D-201ENST00000011700 NAT9Q9BTE0 207 aa6.48□□□□□ -1.37
VPS13D-201ENST00000011700 WWP1Q9H0M0 922 aa6.48□□□□□ -1.37
VPS13D-201ENST00000011700 PLEKHA5Q9HAU0 1116 aa6.48□□□□□ -1.37
VPS13D-201ENST00000011700 CDY2AQ9Y6F7 541 aa6.48□□□□□ -1.37
VPS13D-201ENST00000011700 CDY1Q9Y6F8 540 aa6.48□□□□□ -1.37
VPS13D-201ENST00000011700 KRT40Q6A162 431 aa6.47□□□□□ -1.37
VPS13D-201ENST00000011700 ZC3H18Q86VM9 953 aaKnown RBP6.47□□□□□ -1.37
VPS13D-201ENST00000011700 DEPDC1BQ8WUY9 529 aa6.47□□□□□ -1.37
VPS13D-201ENST00000011700 CFAP36Q96G28 342 aa6.47□□□□□ -1.37
VPS13D-201ENST00000011700 TRERF1Q96PN7 1200 aa6.47□□□□□ -1.37
VPS13D-201ENST00000011700 ST7Q9NRC1 585 aa6.47□□□□□ -1.37
VPS13D-201ENST00000011700 STAP1Q9ULZ2 295 aa6.47□□□□□ -1.37
VPS13D-201ENST00000011700 AP3M1Q9Y2T2 418 aa6.47□□□□□ -1.37
VPS13D-201ENST00000011700 IQCA1LA6NCM1 817 aa6.47□□□□□ -1.37
VPS13D-201ENST00000011700 SAC3D1A6NKF1 404 aa6.47□□□□□ -1.37
VPS13D-201ENST00000011700 PRR23D1E9PI22 279 aaPredicted RBP6.47□□□□□ -1.37
VPS13D-201ENST00000011700 KRT75O95678 551 aa6.47□□□□□ -1.37
VPS13D-201ENST00000011700 MYCNP04198 464 aaPredicted RBP6.47□□□□□ -1.37
VPS13D-201ENST00000011700 PRR23D2P0DMB1 279 aaPredicted RBP6.47□□□□□ -1.37
VPS13D-201ENST00000011700 BLVRAP53004 296 aa6.47□□□□□ -1.37
VPS13D-201ENST00000011700 KLC1Q07866 573 aa6.47□□□□□ -1.37
VPS13D-201ENST00000011700 TTC23LQ6PF05 361 aa6.47□□□□□ -1.37
VPS13D-201ENST00000011700 NME9Q86XW9 330 aa6.47□□□□□ -1.37
VPS13D-201ENST00000011700 ELMOD1Q8N336 334 aa6.47□□□□□ -1.37
VPS13D-201ENST00000011700 DDI1Q8WTU0 396 aa6.47□□□□□ -1.37
VPS13D-201ENST00000011700 GTF3C2Q8WUA4 911 aaPredicted RBP6.47□□□□□ -1.37
VPS13D-201ENST00000011700 CCDC85AQ96PX6 553 aaPredicted RBP6.47□□□□□ -1.37
VPS13D-201ENST00000011700 SH3GL1Q99961 368 aa6.47□□□□□ -1.37
VPS13D-201ENST00000011700 STAP2Q9UGK3 403 aa6.47□□□□□ -1.37
VPS13D-201ENST00000011700 CLEC11AQ9Y240 323 aa6.47□□□□□ -1.37
VPS13D-201ENST00000011700 PCDHB15Q9Y5E8 787 aa6.47□□□□□ -1.37
VPS13D-201ENST00000011700 A0A1W2PP64 1363 aa6.47□□□□□ -1.37
VPS13D-201ENST00000011700 SLFN14P0C7P3 912 aa6.47□□□□□ -1.37
VPS13D-201ENST00000011700 IDI1Q13907 227 aa6.47□□□□□ -1.37
VPS13D-201ENST00000011700 ZNF174Q15697 407 aa6.47□□□□□ -1.37
VPS13D-201ENST00000011700 CEP55Q53EZ4 464 aa6.47□□□□□ -1.37
VPS13D-201ENST00000011700 MTHFD1LQ6UB35 978 aa6.47□□□□□ -1.37
VPS13D-201ENST00000011700 C8orf4Q9NR00 106 aa6.47□□□□□ -1.37
VPS13D-201ENST00000011700 PRR23AA6NEV1 266 aa6.47□□□□□ -1.37
VPS13D-201ENST00000011700 TBC1D4O60343 1298 aa6.47□□□□□ -1.37
VPS13D-201ENST00000011700 SNX2O60749 519 aa6.47□□□□□ -1.37
VPS13D-201ENST00000011700 SFNP31947 248 aa6.47□□□□□ -1.37
VPS13D-201ENST00000011700 HSPA9P38646 679 aaKnown RBP6.47□□□□□ -1.37
VPS13D-201ENST00000011700 TRIM71Q2Q1W2 868 aaKnown RBP6.47□□□□□ -1.37
VPS13D-201ENST00000011700 ZNF544Q6NX49 715 aa6.47□□□□□ -1.37
VPS13D-201ENST00000011700 KLHL7Q8IXQ5 586 aa6.47□□□□□ -1.37
VPS13D-201ENST00000011700 FANCBQ8NB91 859 aa6.47□□□□□ -1.37
VPS13D-201ENST00000011700 CALML6Q8TD86 181 aa6.47□□□□□ -1.37
VPS13D-201ENST00000011700 UBN1Q9NPG3 1134 aa6.47□□□□□ -1.37
VPS13D-201ENST00000011700 FBXO40Q9UH90 709 aa6.47□□□□□ -1.37
VPS13D-201ENST00000011700 DLG5Q8TDM6 1919 aa6.47□□□□□ -1.37
VPS13D-201ENST00000011700 FAM187AA6NFU0 413 aa6.47□□□□□ -1.37
VPS13D-201ENST00000011700 E2F6O75461 281 aa6.47□□□□□ -1.37
VPS13D-201ENST00000011700 KRT20P35900 424 aa6.47□□□□□ -1.37
VPS13D-201ENST00000011700 RECQLP46063 649 aaPredicted RBP6.47□□□□□ -1.37
VPS13D-201ENST00000011700 BAG6P46379 1132 aa6.47□□□□□ -1.37
VPS13D-201ENST00000011700 KCNQ4P56696 695 aa6.47□□□□□ -1.37
VPS13D-201ENST00000011700 SESN3P58005 492 aa6.47□□□□□ -1.37
VPS13D-201ENST00000011700 STX3Q13277 289 aa6.47□□□□□ -1.37
VPS13D-201ENST00000011700 RNF139Q8WU17 664 aa6.47□□□□□ -1.37
VPS13D-201ENST00000011700 PACSIN1Q9BY11 444 aa6.47□□□□□ -1.37
VPS13D-201ENST00000011700 CCDC134Q9H6E4 229 aa6.47□□□□□ -1.37
VPS13D-201ENST00000011700 COG4Q9H9E3 785 aa6.47□□□□□ -1.37
VPS13D-201ENST00000011700 PXDNLA1KZ92 1463 aa6.47□□□□□ -1.37
VPS13D-201ENST00000011700 E7EWF7 191 aa6.47□□□□□ -1.37
VPS13D-201ENST00000011700 CDH16O75309 829 aa6.47□□□□□ -1.37
VPS13D-201ENST00000011700 SUPT3HO75486 399 aa6.47□□□□□ -1.37
VPS13D-201ENST00000011700 KRT19P08727 400 aa6.47□□□□□ -1.37
VPS13D-201ENST00000011700 FCGR1AP12314 374 aa6.47□□□□□ -1.37
VPS13D-201ENST00000011700 TXKP42681 527 aa6.47□□□□□ -1.37
VPS13D-201ENST00000011700 CNOT6LQ96LI5 555 aaKnown RBP6.47□□□□□ -1.37
VPS13D-201ENST00000011700 CYTH2Q99418 400 aa6.47□□□□□ -1.37
VPS13D-201ENST00000011700 SLF1Q9BQI6 1058 aa6.47□□□□□ -1.37
VPS13D-201ENST00000011700 PDP2Q9P2J9 529 aa6.47□□□□□ -1.37
VPS13D-201ENST00000011700 V9GY48 417 aaPredicted RBP6.47□□□□□ -1.37
VPS13D-201ENST00000011700 NUP153P49790 1475 aaKnown RBP6.47□□□□□ -1.37
VPS13D-201ENST00000011700 ARMCX5Q6P1M9 558 aa6.47□□□□□ -1.37
VPS13D-201ENST00000011700 NLRP9Q7RTR0 991 aa6.47□□□□□ -1.37
VPS13D-201ENST00000011700 HPS3Q969F9 1004 aa6.47□□□□□ -1.37
VPS13D-201ENST00000011700 PDE11AQ9HCR9 933 aa6.47□□□□□ -1.37
VPS13D-201ENST00000011700 ASNSD1Q9NWL6 643 aa6.47□□□□□ -1.37
VPS13D-201ENST00000011700 NRBP1Q9UHY1 535 aa6.47□□□□□ -1.37
VPS13D-201ENST00000011700 DNAJC12Q9UKB3 198 aa6.47□□□□□ -1.37
VPS13D-201ENST00000011700 ADAM30Q9UKF2 790 aa6.47□□□□□ -1.37
VPS13D-201ENST00000011700 IQGAP1P46940 1657 aa6.47□□□□□ -1.37
Retrieved 100 of 20,778 RNA–protein pairs in 16.7 ms