RNA–Protein interactions for RNA: ENST00000642137.1

LINC00339-213, long intergenic non-protein coding RNA 339, human

BASIC

Gene LINC00339, Length 222 nt, Biotype transcribed processed pseudogene, Subcellular localisation Cytosol, Ribosome .

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RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
LINC00339-213	ENST00000642137	GLT1D1	Q96MS3	346 aa		13.74	□□□□□ -0.21
LINC00339-213	ENST00000642137	SEZ6L	Q9BYH1	1024 aa		13.74	□□□□□ -0.21
LINC00339-213	ENST00000642137	LRRC27	Q9C0I9	530 aa		13.74	□□□□□ -0.21
LINC00339-213	ENST00000642137	SERTAD1	Q9UHV2	236 aa		13.74	□□□□□ -0.21
LINC00339-213	ENST00000642137	COL1A2	P08123	1366 aa		13.73	□□□□□ -0.21
LINC00339-213	ENST00000642137	SCN10A	Q9Y5Y9	1956 aa		13.73	□□□□□ -0.21
LINC00339-213	ENST00000642137	RRN3P2	A6NIE6	340 aa		13.73	□□□□□ -0.21
LINC00339-213	ENST00000642137	ACTN4	O43707	911 aa	Known RBP	13.73	□□□□□ -0.21
LINC00339-213	ENST00000642137	INSRR	P14616	1297 aa		13.73	□□□□□ -0.21
LINC00339-213	ENST00000642137	SLC12A3	P55017	1021 aa		13.73	□□□□□ -0.21
LINC00339-213	ENST00000642137	AMPD3	Q01432	767 aa		13.73	□□□□□ -0.21
LINC00339-213	ENST00000642137	MCM6	Q14566	821 aa		13.73	□□□□□ -0.21
LINC00339-213	ENST00000642137	TARBP2	Q15633	366 aa	Known RBP	13.73	□□□□□ -0.21
LINC00339-213	ENST00000642137	XKR9	Q5GH70	373 aa		13.73	□□□□□ -0.21
LINC00339-213	ENST00000642137	TRMT1L	Q7Z2T5	733 aa	Known RBP	13.73	□□□□□ -0.21
LINC00339-213	ENST00000642137	GPT2	Q8TD30	523 aa		13.73	□□□□□ -0.21
LINC00339-213	ENST00000642137	VTI1A	Q96AJ9	217 aa		13.73	□□□□□ -0.21
LINC00339-213	ENST00000642137	CCDC34	Q96HJ3	373 aa		13.73	□□□□□ -0.21
LINC00339-213	ENST00000642137	CEP170P1	Q96L14	293 aa		13.73	□□□□□ -0.21
LINC00339-213	ENST00000642137	CEP89	Q96ST8	783 aa		13.73	□□□□□ -0.21
LINC00339-213	ENST00000642137	BHMT2	Q9H2M3	363 aa		13.73	□□□□□ -0.21
LINC00339-213	ENST00000642137	CYP26B1	Q9NR63	512 aa		13.73	□□□□□ -0.21
LINC00339-213	ENST00000642137	KBTBD4	Q9NVX7	518 aa		13.73	□□□□□ -0.21
LINC00339-213	ENST00000642137	SEPT9	Q9UHD8	586 aa	Predicted RBP	13.73	□□□□□ -0.21
LINC00339-213	ENST00000642137	TRPC6	Q9Y210	931 aa		13.73	□□□□□ -0.21
LINC00339-213	ENST00000642137	NRCAM	Q92823	1304 aa		13.72	□□□□□ -0.21
LINC00339-213	ENST00000642137	MNX1	P50219	401 aa	Predicted RBP	13.72	□□□□□ -0.21
LINC00339-213	ENST00000642137	NPEPPS	P55786	919 aa		13.72	□□□□□ -0.21
LINC00339-213	ENST00000642137	PTPN11	Q06124	597 aa	Predicted RBP	13.72	□□□□□ -0.21
LINC00339-213	ENST00000642137	SKOR2	Q2VWA4	1001 aa	Predicted RBP	13.72	□□□□□ -0.21
LINC00339-213	ENST00000642137	NBPF20	Q3BBV1	942 aa		13.72	□□□□□ -0.21
LINC00339-213	ENST00000642137	RINT1	Q6NUQ1	792 aa		13.72	□□□□□ -0.21
LINC00339-213	ENST00000642137	NFRKB	Q6P4R8	1299 aa		13.72	□□□□□ -0.21
LINC00339-213	ENST00000642137	SH3RF1	Q7Z6J0	888 aa		13.72	□□□□□ -0.21
LINC00339-213	ENST00000642137	SESTD1	Q86VW0	696 aa		13.72	□□□□□ -0.21
LINC00339-213	ENST00000642137	CNNM3	Q8NE01	707 aa		13.72	□□□□□ -0.21
LINC00339-213	ENST00000642137	TNMD	Q9H2S6	317 aa		13.72	□□□□□ -0.21
LINC00339-213	ENST00000642137	PDLIM7	Q9NR12	457 aa		13.72	□□□□□ -0.21
LINC00339-213	ENST00000642137	DACT1	Q9NYF0	836 aa		13.72	□□□□□ -0.21
LINC00339-213	ENST00000642137	KCND2	Q9NZV8	630 aa		13.72	□□□□□ -0.21
LINC00339-213	ENST00000642137		A0A1W2PQ45	241 aa	Predicted RBP	13.71	□□□□□ -0.21
LINC00339-213	ENST00000642137		A0A1W2PQY0	241 aa		13.71	□□□□□ -0.21
LINC00339-213	ENST00000642137	ARHGEF35	A5YM69	484 aa		13.71	□□□□□ -0.21
LINC00339-213	ENST00000642137	TMEM150B	A6NC51	233 aa		13.71	□□□□□ -0.21
LINC00339-213	ENST00000642137	ZBTB42	B2RXF5	422 aa		13.71	□□□□□ -0.21
LINC00339-213	ENST00000642137	MAGEB2	O15479	319 aa		13.71	□□□□□ -0.21
LINC00339-213	ENST00000642137	KIN	O60870	393 aa	Known RBP	13.71	□□□□□ -0.21
LINC00339-213	ENST00000642137	DGAT1	O75907	488 aa		13.71	□□□□□ -0.21
LINC00339-213	ENST00000642137	SMIM10L2A	P0DMW4	78 aa		13.71	□□□□□ -0.21
LINC00339-213	ENST00000642137	SMIM10L2B	P0DMW5	78 aa		13.71	□□□□□ -0.21
LINC00339-213	ENST00000642137	GNAT1	P11488	350 aa		13.71	□□□□□ -0.21
LINC00339-213	ENST00000642137	ITGA7	Q13683	1181 aa		13.71	□□□□□ -0.21
LINC00339-213	ENST00000642137	MTERF2	Q49AM1	385 aa		13.71	□□□□□ -0.21
LINC00339-213	ENST00000642137	COL13A1	Q5TAT6	717 aa	Predicted RBP	13.71	□□□□□ -0.21
LINC00339-213	ENST00000642137	PLA2G4F	Q68DD2	849 aa		13.71	□□□□□ -0.21
LINC00339-213	ENST00000642137	PADI6	Q6TGC4	694 aa		13.71	□□□□□ -0.21
LINC00339-213	ENST00000642137	C1orf186	Q6ZWK4	172 aa		13.71	□□□□□ -0.21
LINC00339-213	ENST00000642137	C7orf31	Q8N865	590 aa		13.71	□□□□□ -0.21
LINC00339-213	ENST00000642137	SLC43A3	Q8NBI5	491 aa		13.71	□□□□□ -0.21
LINC00339-213	ENST00000642137	PAGE5	Q96GU1	130 aa		13.71	□□□□□ -0.21
LINC00339-213	ENST00000642137	CCDC43	Q96MW1	224 aa	Known RBP	13.71	□□□□□ -0.21
LINC00339-213	ENST00000642137	C7orf25	Q9BPX7	421 aa		13.71	□□□□□ -0.21
LINC00339-213	ENST00000642137	JPH2	Q9BR39	696 aa	Predicted RBP	13.71	□□□□□ -0.21
LINC00339-213	ENST00000642137	DHX33	Q9H6R0	707 aa	Known RBP	13.71	□□□□□ -0.21
LINC00339-213	ENST00000642137	STARD7	Q9NQZ5	370 aa		13.71	□□□□□ -0.21
LINC00339-213	ENST00000642137	BMP2K	Q9NSY1	1161 aa	Predicted RBP	13.71	□□□□□ -0.21
LINC00339-213	ENST00000642137	HDAC6	Q9UBN7	1215 aa		13.71	□□□□□ -0.21
LINC00339-213	ENST00000642137	GRIN2D	O15399	1336 aa		13.7	□□□□□ -0.22
LINC00339-213	ENST00000642137	IGKV6-21	A0A0C4DH24	114 aa		13.7	□□□□□ -0.22
LINC00339-213	ENST00000642137		A0A0U1RQG5	324 aa	Predicted RBP	13.7	□□□□□ -0.22
LINC00339-213	ENST00000642137	C17orf102	A2RUQ5	167 aa		13.7	□□□□□ -0.22
LINC00339-213	ENST00000642137	MAF	O75444	373 aa	Predicted RBP	13.7	□□□□□ -0.22
LINC00339-213	ENST00000642137	SSB	P05455	408 aa	Known RBP eCLIP	13.7	□□□□□ -0.22
LINC00339-213	ENST00000642137	MYL1	P05976	194 aa		13.7	□□□□□ -0.22
LINC00339-213	ENST00000642137	CYP11B2	P19099	503 aa		13.7	□□□□□ -0.22
LINC00339-213	ENST00000642137	KLRC1	P26715	233 aa		13.7	□□□□□ -0.22
LINC00339-213	ENST00000642137	HOXC8	P31273	242 aa		13.7	□□□□□ -0.22
LINC00339-213	ENST00000642137	RFC5	P40937	340 aa		13.7	□□□□□ -0.22
LINC00339-213	ENST00000642137	CHMP4BP1	P59074	171 aa		13.7	□□□□□ -0.22
LINC00339-213	ENST00000642137	ADAM17	P78536	824 aa		13.7	□□□□□ -0.22
LINC00339-213	ENST00000642137	MDM2	Q00987	491 aa	Predicted RBP	13.7	□□□□□ -0.22
LINC00339-213	ENST00000642137	PPFIA1	Q13136	1202 aa		13.7	□□□□□ -0.22
LINC00339-213	ENST00000642137	DHX8	Q14562	1220 aa	Known RBP	13.7	□□□□□ -0.22
LINC00339-213	ENST00000642137	GRIK4	Q16099	956 aa		13.7	□□□□□ -0.22
LINC00339-213	ENST00000642137	ARSH	Q5FYA8	562 aa		13.7	□□□□□ -0.22
LINC00339-213	ENST00000642137	CNNM4	Q6P4Q7	775 aa		13.7	□□□□□ -0.22
LINC00339-213	ENST00000642137	MTR	Q99707	1265 aa		13.7	□□□□□ -0.22
LINC00339-213	ENST00000642137	SH2D3A	Q9BRG2	576 aa		13.7	□□□□□ -0.22
LINC00339-213	ENST00000642137	TIPIN	Q9BVW5	301 aa		13.7	□□□□□ -0.22
LINC00339-213	ENST00000642137	SETD4	Q9NVD3	440 aa		13.7	□□□□□ -0.22
LINC00339-213	ENST00000642137	GTF2IRD1	Q9UHL9	959 aa		13.7	□□□□□ -0.22
LINC00339-213	ENST00000642137	HOOK1	Q9UJC3	728 aa	Known RBP	13.7	□□□□□ -0.22
LINC00339-213	ENST00000642137	MBLAC1	A4D2B0	266 aa	Predicted RBP	13.69	□□□□□ -0.22
LINC00339-213	ENST00000642137	MYMK	A6NI61	221 aa		13.69	□□□□□ -0.22
LINC00339-213	ENST00000642137	ARVCF	O00192	962 aa		13.69	□□□□□ -0.22
LINC00339-213	ENST00000642137	GAS2	O43903	313 aa	Known RBP	13.69	□□□□□ -0.22
LINC00339-213	ENST00000642137	COL6A1	P12109	1028 aa		13.69	□□□□□ -0.22
LINC00339-213	ENST00000642137	GUCY2C	P25092	1073 aa		13.69	□□□□□ -0.22
LINC00339-213	ENST00000642137	AFM	P43652	599 aa		13.69	□□□□□ -0.22
LINC00339-213	ENST00000642137	CDK7	P50613	346 aa		13.69	□□□□□ -0.22

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