RNA–Protein interactions for RNA: ENST00000641996.1

SCN1A-221, Transcript of sodium voltage-gated channel alpha subunit 1, humanhuman

Gene SCN1A, Length 12,903 nt, Biotype nonsense mediated decay, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN1A-221ENST00000641996 NPTX2P47972 431 aa3.84□□□□□ -1.79
SCN1A-221ENST00000641996 LACTBP83111 547 aaPredicted RBP3.84□□□□□ -1.79
SCN1A-221ENST00000641996 TTF1Q15361 905 aaPredicted RBP3.84□□□□□ -1.79
SCN1A-221ENST00000641996 RCSD1Q6JBY9 416 aa3.84□□□□□ -1.79
SCN1A-221ENST00000641996 FAM180AQ6UWF9 173 aa3.84□□□□□ -1.79
SCN1A-221ENST00000641996 PTF1AQ7RTS3 328 aa3.84□□□□□ -1.79
SCN1A-221ENST00000641996 METTL6Q8TCB7 284 aa3.84□□□□□ -1.79
SCN1A-221ENST00000641996 CALML6Q8TD86 181 aa3.84□□□□□ -1.79
SCN1A-221ENST00000641996 RCAN3Q9UKA8 241 aa3.84□□□□□ -1.79
SCN1A-221ENST00000641996 FRMPD2Q68DX3 1309 aaPredicted RBP3.84□□□□□ -1.8
SCN1A-221ENST00000641996 ABCA1O95477 2261 aa3.84□□□□□ -1.8
SCN1A-221ENST00000641996 FAM221BA6H8Z2 402 aa3.84□□□□□ -1.8
SCN1A-221ENST00000641996 NBPF26B4DH59 902 aa3.84□□□□□ -1.8
SCN1A-221ENST00000641996 POLBP06746 335 aa3.84□□□□□ -1.8
SCN1A-221ENST00000641996 LTA4HP09960 611 aaKnown RBP3.84□□□□□ -1.8
SCN1A-221ENST00000641996 PYGMP11217 842 aa3.84□□□□□ -1.8
SCN1A-221ENST00000641996 ITGALP20701 1170 aa3.84□□□□□ -1.8
SCN1A-221ENST00000641996 HSD3B2P26439 372 aa3.84□□□□□ -1.8
SCN1A-221ENST00000641996 CCDC62Q6P9F0 684 aa3.84□□□□□ -1.8
SCN1A-221ENST00000641996 RASSF3Q86WH2 238 aa3.84□□□□□ -1.8
SCN1A-221ENST00000641996 NBPF15Q8N660 670 aa3.84□□□□□ -1.8
SCN1A-221ENST00000641996 TTC8Q8TAM2 541 aa3.84□□□□□ -1.8
SCN1A-221ENST00000641996 GRIN3AQ8TCU5 1115 aa3.84□□□□□ -1.8
SCN1A-221ENST00000641996 COG1Q8WTW3 980 aa3.84□□□□□ -1.8
SCN1A-221ENST00000641996 MPHOSPH9Q99550 1183 aa3.84□□□□□ -1.8
SCN1A-221ENST00000641996 CPA4Q9UI42 421 aa3.84□□□□□ -1.8
SCN1A-221ENST00000641996 SPATA2Q9UM82 520 aa3.84□□□□□ -1.8
SCN1A-221ENST00000641996 PCDHGB6Q9Y5F9 930 aa3.84□□□□□ -1.8
SCN1A-221ENST00000641996 MYL4P12829 197 aa3.84□□□□□ -1.8
SCN1A-221ENST00000641996 JAK1P23458 1154 aa3.84□□□□□ -1.8
SCN1A-221ENST00000641996 NLRP12P59046 1061 aa3.84□□□□□ -1.8
SCN1A-221ENST00000641996 TFAP4Q01664 338 aa3.84□□□□□ -1.8
SCN1A-221ENST00000641996 SLC22A25Q6T423 547 aa3.84□□□□□ -1.8
SCN1A-221ENST00000641996 ZNF321PQ8N8H1 164 aa3.84□□□□□ -1.8
SCN1A-221ENST00000641996 THRSPQ92748 146 aa3.84□□□□□ -1.8
SCN1A-221ENST00000641996 TMED5Q9Y3A6 229 aa3.84□□□□□ -1.8
SCN1A-221ENST00000641996 CCT5P48643 541 aa3.84□□□□□ -1.8
SCN1A-221ENST00000641996 BPIFB3P59826 476 aa3.84□□□□□ -1.8
SCN1A-221ENST00000641996 GALK2Q01415 458 aa3.84□□□□□ -1.8
SCN1A-221ENST00000641996 SMU1Q2TAY7 513 aa3.84□□□□□ -1.8
SCN1A-221ENST00000641996 RNF207Q6ZRF8 634 aa3.84□□□□□ -1.8
SCN1A-221ENST00000641996 TMTC3Q6ZXV5 915 aa3.84□□□□□ -1.8
SCN1A-221ENST00000641996 LIX1LQ8IVB5 337 aa3.84□□□□□ -1.8
SCN1A-221ENST00000641996 ZNF579Q8NAF0 562 aaKnown RBP3.84□□□□□ -1.8
SCN1A-221ENST00000641996 THAP11Q96EK4 314 aa3.84□□□□□ -1.8
SCN1A-221ENST00000641996 ITIH6Q6UXX5 1313 aa3.83□□□□□ -1.8
SCN1A-221ENST00000641996 NCK2O43639 380 aa3.83□□□□□ -1.8
SCN1A-221ENST00000641996 KERAO60938 352 aa3.83□□□□□ -1.8
SCN1A-221ENST00000641996 EVI2BP34910 448 aa3.83□□□□□ -1.8
SCN1A-221ENST00000641996 WDR45BQ5MNZ6 344 aa3.83□□□□□ -1.8
SCN1A-221ENST00000641996 CLVS2Q5SYC1 327 aa3.83□□□□□ -1.8
SCN1A-221ENST00000641996 ATAD3BQ5T9A4 648 aa3.83□□□□□ -1.8
SCN1A-221ENST00000641996 KLC3Q6P597 504 aa3.83□□□□□ -1.8
SCN1A-221ENST00000641996 KRT78Q8N1N4 520 aa3.83□□□□□ -1.8
SCN1A-221ENST00000641996 PHF21AQ96BD5 680 aa3.83□□□□□ -1.8
SCN1A-221ENST00000641996 MAML3Q96JK9 1138 aa3.83□□□□□ -1.8
SCN1A-221ENST00000641996 PIGSQ96S52 555 aa3.83□□□□□ -1.8
SCN1A-221ENST00000641996 KCTD10Q9H3F6 313 aa3.83□□□□□ -1.8
SCN1A-221ENST00000641996 ALG13Q9NP73 1137 aaKnown RBP3.83□□□□□ -1.8
SCN1A-221ENST00000641996 SEC23IPQ9Y6Y8 1000 aaKnown RBP3.83□□□□□ -1.8
SCN1A-221ENST00000641996 A0A0G2JPF8 293 aa3.83□□□□□ -1.8
SCN1A-221ENST00000641996 HNRNPCL3B7ZW38 293 aa3.83□□□□□ -1.8
SCN1A-221ENST00000641996 GOLGA8KD6RF30 607 aa3.83□□□□□ -1.8
SCN1A-221ENST00000641996 OR5F1O95221 314 aa3.83□□□□□ -1.8
SCN1A-221ENST00000641996 HNRNPCL4P0DMR1 293 aa3.83□□□□□ -1.8
SCN1A-221ENST00000641996 SLC8A3P57103 927 aa3.83□□□□□ -1.8
SCN1A-221ENST00000641996 ART3Q13508 389 aa3.83□□□□□ -1.8
SCN1A-221ENST00000641996 TMEM164Q5U3C3 297 aa3.83□□□□□ -1.8
SCN1A-221ENST00000641996 GPATCH1Q9BRR8 931 aaKnown RBP3.83□□□□□ -1.8
SCN1A-221ENST00000641996 NLRC4Q9NPP4 1024 aa3.83□□□□□ -1.8
SCN1A-221ENST00000641996 PKD2L2Q9NZM6 624 aa3.83□□□□□ -1.8
SCN1A-221ENST00000641996 MRPL11Q9Y3B7 192 aaKnown RBP3.83□□□□□ -1.8
SCN1A-221ENST00000641996 TMEM232C9JQI7 657 aa3.83□□□□□ -1.8
SCN1A-221ENST00000641996 ACTN4O43707 911 aaKnown RBP3.83□□□□□ -1.8
SCN1A-221ENST00000641996 NMT2O60551 498 aa3.83□□□□□ -1.8
SCN1A-221ENST00000641996 DNTTP04053 509 aa3.83□□□□□ -1.8
SCN1A-221ENST00000641996 CKBP12277 381 aa3.83□□□□□ -1.8
SCN1A-221ENST00000641996 PPA1Q15181 289 aa3.83□□□□□ -1.8
SCN1A-221ENST00000641996 NONOQ15233 471 aaKnown RBP eCLIP3.83□□□□□ -1.8
SCN1A-221ENST00000641996 GPHNQ9NQX3 736 aaPredicted RBP3.83□□□□□ -1.8
SCN1A-221ENST00000641996 KBTBD4Q9NVX7 518 aa3.83□□□□□ -1.8
SCN1A-221ENST00000641996 LRCH1Q9Y2L9 728 aa3.83□□□□□ -1.8
SCN1A-221ENST00000641996 SYCE1LA8MT33 242 aa3.83□□□□□ -1.8
SCN1A-221ENST00000641996 RAPSNQ13702 412 aa3.83□□□□□ -1.8
SCN1A-221ENST00000641996 SYT16Q17RD7 645 aa3.83□□□□□ -1.8
SCN1A-221ENST00000641996 CDH24Q86UP0 819 aa3.83□□□□□ -1.8
SCN1A-221ENST00000641996 UNC45BQ8IWX7 931 aa3.83□□□□□ -1.8
SCN1A-221ENST00000641996 RHOBTB2Q9BYZ6 727 aa3.83□□□□□ -1.8
SCN1A-221ENST00000641996 UNKQ9C0B0 810 aaKnown RBP3.83□□□□□ -1.8
SCN1A-221ENST00000641996 BHMT2Q9H2M3 363 aa3.83□□□□□ -1.8
SCN1A-221ENST00000641996 KANSL2Q9H9L4 492 aa3.83□□□□□ -1.8
SCN1A-221ENST00000641996 C15orf38-AP3S2A0A0A6YYH1 394 aa3.83□□□□□ -1.8
SCN1A-221ENST00000641996 UBXN8O00124 270 aa3.83□□□□□ -1.8
SCN1A-221ENST00000641996 TRIM23P36406 574 aa3.83□□□□□ -1.8
SCN1A-221ENST00000641996 RPP30P78346 268 aaKnown RBP3.83□□□□□ -1.8
SCN1A-221ENST00000641996 ZNF746Q6NUN9 644 aaPredicted RBP3.83□□□□□ -1.8
SCN1A-221ENST00000641996 KDELC1Q6UW63 502 aa3.83□□□□□ -1.8
SCN1A-221ENST00000641996 ANKFN1Q8N957 763 aa3.83□□□□□ -1.8
SCN1A-221ENST00000641996 HNRNPLLQ8WVV9 542 aaKnown RBP3.83□□□□□ -1.8
SCN1A-221ENST00000641996 CPT1BQ92523 772 aa3.83□□□□□ -1.8
Retrieved 100 of 20,778 RNA–protein pairs in 20.9 ms