RNA–Protein interactions for RNA: ENST00000626660.1

SQSTM1-216, Transcript of sequestosome 1, humanhuman

TSL 5 BASIC

Gene SQSTM1, Length 274 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SQSTM1-216ENST00000626660 CDK5RAP3Q96JB5 506 aa21.36■■□□□ 1.01
SQSTM1-216ENST00000626660 HIPK3Q9H422 1215 aa21.36■■□□□ 1.01
SQSTM1-216ENST00000626660 ANKEF1Q9NU02 776 aa21.36■■□□□ 1.01
SQSTM1-216ENST00000626660 PPME1Q9Y570 386 aa21.36■■□□□ 1.01
SQSTM1-216ENST00000626660 MBLAC1A4D2B0 266 aaPredicted RBP21.35■■□□□ 1.01
SQSTM1-216ENST00000626660 SLC26A4O43511 780 aa21.35■■□□□ 1.01
SQSTM1-216ENST00000626660 XRCC6P12956 609 aaKnown RBP eCLIP21.35■■□□□ 1.011e-5■■■□□ 14.9
SQSTM1-216ENST00000626660 RAG1P15918 1043 aa21.35■■□□□ 1.01
SQSTM1-216ENST00000626660 KLRC1P26715 233 aa21.35■■□□□ 1.01
SQSTM1-216ENST00000626660 CDC25AP30304 524 aa21.35■■□□□ 1.01
SQSTM1-216ENST00000626660 TBC1D8BQ0IIM8 1120 aa21.35■■□□□ 1.01
SQSTM1-216ENST00000626660 ZRSR1Q15695 479 aaKnown RBP21.35■■□□□ 1.01
SQSTM1-216ENST00000626660 XKR9Q5GH70 373 aa21.35■■□□□ 1.01
SQSTM1-216ENST00000626660 MARCH8Q5T0T0 291 aa21.35■■□□□ 1.01
SQSTM1-216ENST00000626660 POTEGQ6S5H5 508 aa21.35■■□□□ 1.01
SQSTM1-216ENST00000626660 MTHFD1LQ6UB35 978 aa21.35■■□□□ 1.01
SQSTM1-216ENST00000626660 SH3RF1Q7Z6J0 888 aa21.35■■□□□ 1.01
SQSTM1-216ENST00000626660 RSPH3Q86UC2 560 aa21.35■■□□□ 1.01
SQSTM1-216ENST00000626660 RETREG2Q8NC44 543 aa21.35■■□□□ 1.01
SQSTM1-216ENST00000626660 CAGE1Q8TC20 777 aa21.35■■□□□ 1.01
SQSTM1-216ENST00000626660 CEP170P1Q96L14 293 aa21.35■■□□□ 1.01
SQSTM1-216ENST00000626660 CSRNP2Q9H175 543 aa21.35■■□□□ 1.01
SQSTM1-216ENST00000626660 ZMYND8Q9ULU4 1186 aaPredicted RBP21.35■■□□□ 1.01
SQSTM1-216ENST00000626660 LOXHD1Q8IVV2 1947 aa21.35■■□□□ 1.01
SQSTM1-216ENST00000626660 TMEM150BA6NC51 233 aa21.34■■□□□ 1.01
SQSTM1-216ENST00000626660 TRIM43BA6NCK2 446 aa21.34■■□□□ 1.01
SQSTM1-216ENST00000626660 ZBTB42B2RXF5 422 aa21.34■■□□□ 1.01
SQSTM1-216ENST00000626660 RPLP2P05387 115 aaKnown RBP21.34■■□□□ 1.01
SQSTM1-216ENST00000626660 TXLNAP40222 546 aa21.34■■□□□ 1.01
SQSTM1-216ENST00000626660 GRIN1Q05586 938 aa21.34■■□□□ 1.01
SQSTM1-216ENST00000626660 TARBP2Q15633 366 aaKnown RBP21.34■■□□□ 1.01
SQSTM1-216ENST00000626660 PLA2G4FQ68DD2 849 aa21.34■■□□□ 1.01
SQSTM1-216ENST00000626660 CABP7Q86V35 215 aa21.34■■□□□ 1.01
SQSTM1-216ENST00000626660 EXOC8Q8IYI6 725 aa21.34■■□□□ 1.01
SQSTM1-216ENST00000626660 RASSF8Q8NHQ8 419 aa21.34■■□□□ 1.01
SQSTM1-216ENST00000626660 TRIM43Q96BQ3 446 aaPredicted RBP21.34■■□□□ 1.01
SQSTM1-216ENST00000626660 CALML4Q96GE6 196 aa21.34■■□□□ 1.01
SQSTM1-216ENST00000626660 SPATA32Q96LK8 384 aa21.34■■□□□ 1.01
SQSTM1-216ENST00000626660 CLIC6Q96NY7 704 aa21.34■■□□□ 1.01
SQSTM1-216ENST00000626660 CTAGE1Q96RT6 745 aa21.34■■□□□ 1.01
SQSTM1-216ENST00000626660 JPH2Q9BR39 696 aaPredicted RBP21.34■■□□□ 1.01
SQSTM1-216ENST00000626660 MMTAG2Q9BU76 263 aaKnown RBP21.34■■□□□ 1.01
SQSTM1-216ENST00000626660 NOC4LQ9BVI4 516 aaKnown RBP21.34■■□□□ 1.01
SQSTM1-216ENST00000626660 PPP1R12CQ9BZL4 782 aa21.34■■□□□ 1.01
SQSTM1-216ENST00000626660 SCAND2PQ9GZW5 306 aaPredicted RBP21.34■■□□□ 1.01
SQSTM1-216ENST00000626660 NT5C3AQ9H0P0 336 aa21.34■■□□□ 1.01
SQSTM1-216ENST00000626660 CYP26B1Q9NR63 512 aa21.34■■□□□ 1.01
SQSTM1-216ENST00000626660 RCOR1Q9UKL0 485 aa21.34■■□□□ 1.01
SQSTM1-216ENST00000626660 KIAA1024Q9UPX6 916 aa21.34■■□□□ 1.01
SQSTM1-216ENST00000626660 PCDHA2Q9Y5H9 948 aa21.34■■□□□ 1.01
SQSTM1-216ENST00000626660 ARID2Q68CP9 1835 aa21.34■■□□□ 1.01
SQSTM1-216ENST00000626660 CUTAO60888 179 aa21.33■■□□□ 1.01
SQSTM1-216ENST00000626660 C22orf31O95567 290 aa21.33■■□□□ 1.01
SQSTM1-216ENST00000626660 SYN1P17600 705 aa21.33■■□□□ 1.01
SQSTM1-216ENST00000626660 ME1P48163 572 aa21.33■■□□□ 1.01
SQSTM1-216ENST00000626660 NPEPPSP55786 919 aa21.33■■□□□ 1.01
SQSTM1-216ENST00000626660 PIGOQ8TEQ8 1089 aa21.33■■□□□ 1.01
SQSTM1-216ENST00000626660 DDX19AQ9NUU7 478 aaKnown RBP21.33■■□□□ 1.01
SQSTM1-216ENST00000626660 SMIM35A0A1B0GVV1 85 aa21.32■■□□□ 1
SQSTM1-216ENST00000626660 PITPNM1O00562 1244 aa21.32■■□□□ 1
SQSTM1-216ENST00000626660 ZBTB39O15060 712 aa21.32■■□□□ 1
SQSTM1-216ENST00000626660 CAND2O75155 1236 aa21.32■■□□□ 1
SQSTM1-216ENST00000626660 TIMP1P01033 207 aa21.32■■□□□ 1
SQSTM1-216ENST00000626660 TMOD1P28289 359 aa21.32■■□□□ 1
SQSTM1-216ENST00000626660 THPOP40225 353 aa21.32■■□□□ 1
SQSTM1-216ENST00000626660 RFC5P40937 340 aa21.32■■□□□ 1
SQSTM1-216ENST00000626660 RUFY4Q6ZNE9 571 aa21.32■■□□□ 1
SQSTM1-216ENST00000626660 KCTD17Q8N5Z5 321 aa21.32■■□□□ 1
SQSTM1-216ENST00000626660 METTL13Q8N6R0 699 aa21.32■■□□□ 1
SQSTM1-216ENST00000626660 LEO1Q8WVC0 666 aaPredicted RBP21.32■■□□□ 1
SQSTM1-216ENST00000626660 DHX38Q92620 1227 aaKnown RBP21.32■■□□□ 1
SQSTM1-216ENST00000626660 SH2D3AQ9BRG2 576 aa21.32■■□□□ 1
SQSTM1-216ENST00000626660 FAM49AQ9H0Q0 323 aaPredicted RBP21.32■■□□□ 1
SQSTM1-216ENST00000626660 DBR1Q9UK59 544 aaKnown RBP21.32■■□□□ 1
SQSTM1-216ENST00000626660 DNM3Q9UQ16 869 aa21.32■■□□□ 1
SQSTM1-216ENST00000626660 H0YGN5 161 aa21.31■■□□□ 1
SQSTM1-216ENST00000626660 POLGP54098 1239 aaPredicted RBP21.31■■□□□ 1
SQSTM1-216ENST00000626660 RBL2Q08999 1139 aa21.31■■□□□ 1
SQSTM1-216ENST00000626660 ECM1Q16610 540 aa21.31■■□□□ 1
SQSTM1-216ENST00000626660 SPECC1Q5M775 1068 aa21.31■■□□□ 1
SQSTM1-216ENST00000626660 HYIQ5T013 277 aa21.31■■□□□ 1
SQSTM1-216ENST00000626660 ZNF579Q8NAF0 562 aaKnown RBP21.31■■□□□ 1
SQSTM1-216ENST00000626660 SLC7A3Q8WY07 619 aa21.31■■□□□ 1
SQSTM1-216ENST00000626660 SYMPKQ92797 1274 aaKnown RBP21.31■■□□□ 1
SQSTM1-216ENST00000626660 ZBTB10Q96DT7 871 aa21.31■■□□□ 1
SQSTM1-216ENST00000626660 CHAMP1Q96JM3 812 aa21.31■■□□□ 1
SQSTM1-216ENST00000626660 LBHD1Q9BQE6 289 aaPredicted RBP21.31■■□□□ 1
SQSTM1-216ENST00000626660 CCSER1Q9C0I3 900 aa21.31■■□□□ 1
SQSTM1-216ENST00000626660 CCDC39Q9UFE4 941 aa21.31■■□□□ 1
SQSTM1-216ENST00000626660 A0A087WWV3 80 aa21.3■■□□□ 1
SQSTM1-216ENST00000626660 ARHGEF35A5YM69 484 aa21.3■■□□□ 1
SQSTM1-216ENST00000626660 MAFO75444 373 aaPredicted RBP21.3■■□□□ 1
SQSTM1-216ENST00000626660 SELPP16109 830 aa21.3■■□□□ 1
SQSTM1-216ENST00000626660 CYP2C18P33260 490 aa21.3■■□□□ 1
SQSTM1-216ENST00000626660 RARRES1P49788 294 aa21.3■■□□□ 1
SQSTM1-216ENST00000626660 DNM2P50570 870 aa21.3■■□□□ 1
SQSTM1-216ENST00000626660 GRB10Q13322 594 aa21.3■■□□□ 1
SQSTM1-216ENST00000626660 TRIM71Q2Q1W2 868 aaKnown RBP21.3■■□□□ 1
SQSTM1-216ENST00000626660 EFCAB12Q6NXP0 572 aa21.3■■□□□ 1
SQSTM1-216ENST00000626660 RPAINQ86UA6 219 aa21.3■■□□□ 1
Retrieved 100 of 20,778 RNA–protein pairs in 17.5 ms