RNA–Protein interactions for RNA: ENST00000622516.4

CUX1-221, Transcript of cut like homeobox 1, humanhuman

TSL 1 (best) BASIC

Gene CUX1, Length 2,990 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Exosome, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CUX1-221ENST00000622516 KCNG1Q9UIX4 513 aa11.67□□□□□ -0.54
CUX1-221ENST00000622516 PDXKO00764 312 aa11.67□□□□□ -0.54
CUX1-221ENST00000622516 CALUO43852 315 aaPredicted RBP11.67□□□□□ -0.54
CUX1-221ENST00000622516 ATP9AO75110 1047 aa11.67□□□□□ -0.54
CUX1-221ENST00000622516 VSNL1P62760 191 aa11.67□□□□□ -0.54
CUX1-221ENST00000622516 TRAF1Q13077 416 aa11.67□□□□□ -0.54
CUX1-221ENST00000622516 TNIP1Q15025 636 aa11.67□□□□□ -0.54
CUX1-221ENST00000622516 SLC9C1Q4G0N8 1177 aa11.67□□□□□ -0.54
CUX1-221ENST00000622516 FAM178BQ8IXR5 827 aa11.67□□□□□ -0.54
CUX1-221ENST00000622516 SLC16A10Q8TF71 515 aa11.67□□□□□ -0.54
CUX1-221ENST00000622516 TUFT1Q9NNX1 390 aa11.67□□□□□ -0.54
CUX1-221ENST00000622516 ARFGAP3Q9NP61 516 aa11.67□□□□□ -0.54
CUX1-221ENST00000622516 ZCCHC17Q9NP64 241 aaKnown RBP11.67□□□□□ -0.54
CUX1-221ENST00000622516 AJAP1Q9UKB5 411 aaPredicted RBP11.67□□□□□ -0.54
CUX1-221ENST00000622516 A0A087X0T9 212 aa11.66□□□□□ -0.54
CUX1-221ENST00000622516 PEX10O60683 326 aa11.66□□□□□ -0.54
CUX1-221ENST00000622516 FAM228BP0C875 321 aa11.66□□□□□ -0.54
CUX1-221ENST00000622516 MATR3P43243 847 aaKnown RBP eCLIP11.66□□□□□ -0.545e-7■■■■□ 22.9
CUX1-221ENST00000622516 TGFB2P61812 414 aa11.66□□□□□ -0.54
CUX1-221ENST00000622516 MAP3K10Q02779 954 aa11.66□□□□□ -0.54
CUX1-221ENST00000622516 WHAMMP3Q1A5X7 153 aa11.66□□□□□ -0.54
CUX1-221ENST00000622516 ASTE1Q2TB18 679 aaPredicted RBP11.66□□□□□ -0.54
CUX1-221ENST00000622516 NFRKBQ6P4R8 1299 aa11.66□□□□□ -0.54
CUX1-221ENST00000622516 MIER3Q7Z3K6 550 aa11.66□□□□□ -0.54
CUX1-221ENST00000622516 CAGE1Q8TC20 777 aa11.66□□□□□ -0.54
CUX1-221ENST00000622516 SYTL5Q8TDW5 730 aaPredicted RBP11.66□□□□□ -0.54
CUX1-221ENST00000622516 COG1Q8WTW3 980 aa11.66□□□□□ -0.54
CUX1-221ENST00000622516 ATG4CQ96DT6 458 aa11.66□□□□□ -0.54
CUX1-221ENST00000622516 GDAP1L1Q96MZ0 367 aa11.66□□□□□ -0.54
CUX1-221ENST00000622516 NACC1Q96RE7 527 aa11.66□□□□□ -0.54
CUX1-221ENST00000622516 UTP3Q9NQZ2 479 aaKnown RBP eCLIP11.66□□□□□ -0.548e-7■■■■■ 154.8
CUX1-221ENST00000622516 TYW1Q9NV66 732 aaKnown RBP11.66□□□□□ -0.54
CUX1-221ENST00000622516 CTDP1Q9Y5B0 961 aaPredicted RBP11.66□□□□□ -0.54
CUX1-221ENST00000622516 RGPD3A6NKT7 1758 aaPredicted RBP11.66□□□□□ -0.54
CUX1-221ENST00000622516 RGPD4Q7Z3J3 1758 aa11.66□□□□□ -0.54
CUX1-221ENST00000622516 TESPA1A2RU30 521 aaPredicted RBP11.66□□□□□ -0.54
CUX1-221ENST00000622516 POLR3GO15318 223 aaPredicted RBP11.66□□□□□ -0.54
CUX1-221ENST00000622516 USO1O60763 962 aaKnown RBP11.66□□□□□ -0.54
CUX1-221ENST00000622516 HIP1RO75146 1068 aa11.66□□□□□ -0.54
CUX1-221ENST00000622516 AFPP02771 609 aaKnown RBP11.66□□□□□ -0.54
CUX1-221ENST00000622516 HSD17B4P51659 736 aa11.66□□□□□ -0.54
CUX1-221ENST00000622516 MARSP56192 900 aaKnown RBP11.66□□□□□ -0.54
CUX1-221ENST00000622516 SP4Q02446 784 aa11.66□□□□□ -0.54
CUX1-221ENST00000622516 R3HDM1Q15032 1099 aaKnown RBP11.66□□□□□ -0.54
CUX1-221ENST00000622516 EHMT1Q9H9B1 1298 aa11.66□□□□□ -0.54
CUX1-221ENST00000622516 SLC38A10Q9HBR0 1119 aa11.66□□□□□ -0.54
CUX1-221ENST00000622516 ZMYM2Q9UBW7 1377 aa11.66□□□□□ -0.54
CUX1-221ENST00000622516 ARHGEF35A5YM69 484 aa11.65□□□□□ -0.54
CUX1-221ENST00000622516 WDR46O15213 610 aaKnown RBP11.65□□□□□ -0.54
CUX1-221ENST00000622516 DHX15O43143 795 aaKnown RBP11.65□□□□□ -0.54
CUX1-221ENST00000622516 TRIM49P0CI25 452 aa11.65□□□□□ -0.54
CUX1-221ENST00000622516 TRIM49CP0CI26 452 aa11.65□□□□□ -0.54
CUX1-221ENST00000622516 PON1P27169 355 aa11.65□□□□□ -0.54
CUX1-221ENST00000622516 KLHL30Q0D2K2 578 aa11.65□□□□□ -0.54
CUX1-221ENST00000622516 MTMR1Q13613 665 aa11.65□□□□□ -0.54
CUX1-221ENST00000622516 EXOC3L4Q17RC7 722 aa11.65□□□□□ -0.54
CUX1-221ENST00000622516 KCTD19Q17RG1 926 aaPredicted RBP11.65□□□□□ -0.54
CUX1-221ENST00000622516 LONRF2Q1L5Z9 754 aa11.65□□□□□ -0.54
CUX1-221ENST00000622516 TKFCQ3LXA3 575 aa11.65□□□□□ -0.54
CUX1-221ENST00000622516 ANGEL2Q5VTE6 544 aaKnown RBP11.65□□□□□ -0.54
CUX1-221ENST00000622516 PPP4R3CPQ6ZMV5 832 aa11.65□□□□□ -0.54
CUX1-221ENST00000622516 ZNF720Q7Z2F6 126 aa11.65□□□□□ -0.54
CUX1-221ENST00000622516 DAW1Q8N136 415 aa11.65□□□□□ -0.54
CUX1-221ENST00000622516 SLC35C1Q96A29 364 aa11.65□□□□□ -0.54
CUX1-221ENST00000622516 SPAG5Q96R06 1193 aa11.65□□□□□ -0.54
CUX1-221ENST00000622516 WRNIP1Q96S55 665 aa11.65□□□□□ -0.54
CUX1-221ENST00000622516 FIZ1Q96SL8 496 aa11.65□□□□□ -0.54
CUX1-221ENST00000622516 GANQ9H2C0 597 aa11.65□□□□□ -0.54
CUX1-221ENST00000622516 PCIF1Q9H4Z3 704 aa11.65□□□□□ -0.54
CUX1-221ENST00000622516 ABCB6Q9NP58 842 aa11.65□□□□□ -0.54
CUX1-221ENST00000622516 GPRC5CQ9NQ84 441 aa11.65□□□□□ -0.54
CUX1-221ENST00000622516 TELO2Q9Y4R8 837 aa11.65□□□□□ -0.54
CUX1-221ENST00000622516 ZHX2Q9Y6X8 837 aa11.65□□□□□ -0.54
CUX1-221ENST00000622516 PLA2G6O60733 806 aa11.65□□□□□ -0.54
CUX1-221ENST00000622516 EPB41P11171 864 aaKnown RBP11.65□□□□□ -0.54
CUX1-221ENST00000622516 UCHL3P15374 230 aa11.65□□□□□ -0.54
CUX1-221ENST00000622516 HMGCS2P54868 508 aa11.65□□□□□ -0.54
CUX1-221ENST00000622516 PTK2Q05397 1052 aa11.65□□□□□ -0.54
CUX1-221ENST00000622516 C2orf54Q08AI8 447 aa11.65□□□□□ -0.54
CUX1-221ENST00000622516 TNFAIP1Q13829 316 aa11.65□□□□□ -0.54
CUX1-221ENST00000622516 EPHA7Q15375 998 aa11.65□□□□□ -0.54
CUX1-221ENST00000622516 UGCGQ16739 394 aa11.65□□□□□ -0.54
CUX1-221ENST00000622516 PAPD7Q5XG87 772 aaKnown RBP11.65□□□□□ -0.54
CUX1-221ENST00000622516 PADI6Q6TGC4 694 aa11.65□□□□□ -0.54
CUX1-221ENST00000622516 FRMD5Q7Z6J6 570 aa11.65□□□□□ -0.54
CUX1-221ENST00000622516 ZC3H3Q8IXZ2 948 aaKnown RBP11.65□□□□□ -0.54
CUX1-221ENST00000622516 TRERF1Q96PN7 1200 aa11.65□□□□□ -0.54
CUX1-221ENST00000622516 RMDN3Q96TC7 470 aa11.65□□□□□ -0.54
CUX1-221ENST00000622516 GOLPH3Q9H4A6 298 aa11.65□□□□□ -0.54
CUX1-221ENST00000622516 FAM184BQ9ULE4 1060 aa11.65□□□□□ -0.54
CUX1-221ENST00000622516 PACSIN2Q9UNF0 486 aaPredicted RBP11.65□□□□□ -0.54
CUX1-221ENST00000622516 LRRN2O75325 713 aa11.64□□□□□ -0.55
CUX1-221ENST00000622516 ZSWIM2Q8NEG5 633 aa11.64□□□□□ -0.55
CUX1-221ENST00000622516 RBM46Q8TBY0 533 aaKnown RBP11.64□□□□□ -0.55
CUX1-221ENST00000622516 KIAA1683Q9H0B3 1180 aa11.64□□□□□ -0.55
CUX1-221ENST00000622516 PLEKHA4Q9H4M7 779 aa11.64□□□□□ -0.55
CUX1-221ENST00000622516 OLFML3Q9NRN5 406 aa11.64□□□□□ -0.55
CUX1-221ENST00000622516 FAM53CQ9NYF3 392 aa11.64□□□□□ -0.55
CUX1-221ENST00000622516 GCNT4Q9P109 453 aa11.64□□□□□ -0.55
CUX1-221ENST00000622516 VGLL3A8MV65 326 aa11.64□□□□□ -0.55
Retrieved 100 of 20,778 RNA–protein pairs in 111.7 ms