RNA–Protein interactions for RNA: ENST00000621131.4

VPS29-212, Transcript of VPS29, retromer complex component, humanhuman

TSL 3 BASIC

Gene VPS29, Length 1,124 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS29-212ENST00000621131 SMARCA2P51531 1590 aa7.5□□□□□ -1.21
VPS29-212ENST00000621131 PEG3Q9GZU2 1588 aa7.5□□□□□ -1.21
VPS29-212ENST00000621131 RIMBP3CA6NJZ7 1639 aa7.5□□□□□ -1.21
VPS29-212ENST00000621131 RIMBP3BA6NNM3 1639 aa7.5□□□□□ -1.21
VPS29-212ENST00000621131 RIMBP3Q9UFD9 1639 aa7.5□□□□□ -1.21
VPS29-212ENST00000621131 GOLGA6L22H0YM25 854 aa7.5□□□□□ -1.21
VPS29-212ENST00000621131 FOXS1O43638 330 aa7.5□□□□□ -1.21
VPS29-212ENST00000621131 RAPGEF3O95398 923 aa7.5□□□□□ -1.21
VPS29-212ENST00000621131 CD83Q01151 205 aa7.5□□□□□ -1.21
VPS29-212ENST00000621131 NOLC1Q14978 699 aaKnown RBP eCLIP7.5□□□□□ -1.21
VPS29-212ENST00000621131 R3HDM1Q15032 1099 aaKnown RBP7.5□□□□□ -1.21
VPS29-212ENST00000621131 EIF4HQ15056 248 aaKnown RBP7.5□□□□□ -1.21
VPS29-212ENST00000621131 RNF151Q2KHN1 245 aa7.5□□□□□ -1.21
VPS29-212ENST00000621131 TMEM177Q53S58 311 aa7.5□□□□□ -1.21
VPS29-212ENST00000621131 LARP4Q71RC2 724 aaKnown RBP eCLIP7.5□□□□□ -1.219e-6■■□□□ 12.1
VPS29-212ENST00000621131 OTOP1Q7RTM1 612 aa7.5□□□□□ -1.21
VPS29-212ENST00000621131 TAX1BP1Q86VP1 789 aa7.5□□□□□ -1.21
VPS29-212ENST00000621131 GBP4Q96PP9 640 aa7.5□□□□□ -1.21
VPS29-212ENST00000621131 LRRC37BQ96QE4 947 aa7.5□□□□□ -1.21
VPS29-212ENST00000621131 FBXO10Q9UK96 956 aa7.5□□□□□ -1.21
VPS29-212ENST00000621131 ASB1Q9Y576 335 aa7.5□□□□□ -1.21
VPS29-212ENST00000621131 FOXP2O15409 715 aa7.49□□□□□ -1.21
VPS29-212ENST00000621131 ADCY8P40145 1251 aa7.49□□□□□ -1.21
VPS29-212ENST00000621131 MECP2P51608 486 aaKnown RBP7.49□□□□□ -1.21
VPS29-212ENST00000621131 SQSTM1Q13501 440 aa7.49□□□□□ -1.21
VPS29-212ENST00000621131 NFE2L2Q16236 605 aa7.49□□□□□ -1.21
VPS29-212ENST00000621131 ZMAT1Q5H9K5 638 aa7.49□□□□□ -1.21
VPS29-212ENST00000621131 TRIM68Q6AZZ1 485 aa7.49□□□□□ -1.21
VPS29-212ENST00000621131 SPRED1Q7Z699 444 aa7.49□□□□□ -1.21
VPS29-212ENST00000621131 C2orf69Q8N8R5 385 aa7.49□□□□□ -1.21
VPS29-212ENST00000621131 TMPRSS5Q9H3S3 457 aa7.49□□□□□ -1.21
VPS29-212ENST00000621131 PRAMEF22A3QJZ6 481 aa7.48□□□□□ -1.21
VPS29-212ENST00000621131 KCNQ1P51787 676 aa7.48□□□□□ -1.21
VPS29-212ENST00000621131 RRADP55042 308 aa7.48□□□□□ -1.21
VPS29-212ENST00000621131 TBR1Q16650 682 aa7.48□□□□□ -1.21
VPS29-212ENST00000621131 FNDC3BQ53EP0 1204 aaKnown RBP7.48□□□□□ -1.21
VPS29-212ENST00000621131 CATSPEREQ5SY80 951 aa7.48□□□□□ -1.21
VPS29-212ENST00000621131 TMEM200BQ69YZ2 307 aa7.48□□□□□ -1.21
VPS29-212ENST00000621131 SH3RF3Q8TEJ3 882 aaPredicted RBP7.48□□□□□ -1.21
VPS29-212ENST00000621131 CDK5RAP1Q96SZ6 601 aaKnown RBP7.48□□□□□ -1.21
VPS29-212ENST00000621131 OR10A5Q9H207 317 aa7.48□□□□□ -1.21
VPS29-212ENST00000621131 CDC42EP3Q9UKI2 254 aa7.48□□□□□ -1.21
VPS29-212ENST00000621131 ZFR2Q9UPR6 939 aaKnown RBP7.48□□□□□ -1.21
VPS29-212ENST00000621131 MATN2O00339 956 aa7.47□□□□□ -1.21
VPS29-212ENST00000621131 RAC3P60763 192 aa7.47□□□□□ -1.21
VPS29-212ENST00000621131 NFYCQ13952 458 aa7.47□□□□□ -1.21
VPS29-212ENST00000621131 BMS1Q14692 1282 aaKnown RBP7.47□□□□□ -1.21
VPS29-212ENST00000621131 TMEM132BQ14DG7 1078 aa7.47□□□□□ -1.21
VPS29-212ENST00000621131 GIMAP8Q8ND71 665 aaPredicted RBP7.47□□□□□ -1.21
VPS29-212ENST00000621131 SEMA4AQ9H3S1 761 aa7.47□□□□□ -1.21
VPS29-212ENST00000621131 KANSL2Q9H9L4 492 aa7.47□□□□□ -1.21
VPS29-212ENST00000621131 TCAF1Q9Y4C2 921 aa7.47□□□□□ -1.21
VPS29-212ENST00000621131 TESMINQ9Y4I5 508 aa7.47□□□□□ -1.21
VPS29-212ENST00000621131 A0A0G2JNJ9 132 aa7.46□□□□□ -1.22
VPS29-212ENST00000621131 HMGCRP04035 888 aa7.46□□□□□ -1.22
VPS29-212ENST00000621131 SELENOPP49908 381 aa7.46□□□□□ -1.22
VPS29-212ENST00000621131 ZXDAP98168 799 aa7.46□□□□□ -1.22
VPS29-212ENST00000621131 IRF9Q00978 393 aa7.46□□□□□ -1.22
VPS29-212ENST00000621131 MOGSQ13724 837 aa7.46□□□□□ -1.22
VPS29-212ENST00000621131 ARHGAP44Q17R89 818 aa7.46□□□□□ -1.22
VPS29-212ENST00000621131 ZNF568Q3ZCX4 644 aa7.46□□□□□ -1.22
VPS29-212ENST00000621131 CC2D1AQ6P1N0 951 aaPredicted RBP7.46□□□□□ -1.22
VPS29-212ENST00000621131 HIPK4Q8NE63 616 aa7.46□□□□□ -1.22
VPS29-212ENST00000621131 FOXRED1Q96CU9 486 aaPredicted RBP7.46□□□□□ -1.22
VPS29-212ENST00000621131 Q9UFV3 132 aa7.46□□□□□ -1.22
VPS29-212ENST00000621131 BAZ1BQ9UIG0 1483 aaKnown RBP7.45□□□□□ -1.22
VPS29-212ENST00000621131 M0R2C6 588 aa7.45□□□□□ -1.22
VPS29-212ENST00000621131 CR2P20023 1033 aa7.45□□□□□ -1.22
VPS29-212ENST00000621131 DUSP8Q13202 625 aa7.45□□□□□ -1.22
VPS29-212ENST00000621131 ZCCHC8Q6NZY4 707 aaKnown RBP7.45□□□□□ -1.22
VPS29-212ENST00000621131 RTN4RL1Q86UN2 441 aaPredicted RBP7.45□□□□□ -1.22
VPS29-212ENST00000621131 PALM2Q8IXS6 379 aa7.45□□□□□ -1.22
VPS29-212ENST00000621131 WDR48Q8TAF3 677 aa7.45□□□□□ -1.22
VPS29-212ENST00000621131 CFHR4Q92496 578 aa7.45□□□□□ -1.22
VPS29-212ENST00000621131 BOCQ9BWV1 1114 aa7.45□□□□□ -1.22
VPS29-212ENST00000621131 KIAA1683Q9H0B3 1180 aa7.45□□□□□ -1.22
VPS29-212ENST00000621131 SAMD15Q9P1V8 674 aa7.45□□□□□ -1.22
VPS29-212ENST00000621131 OAZ3Q9UMX2 235 aa7.45□□□□□ -1.22
VPS29-212ENST00000621131 NR2E1Q9Y466 385 aa7.45□□□□□ -1.22
VPS29-212ENST00000621131 ATAD2BQ9ULI0 1458 aa7.44□□□□□ -1.22
VPS29-212ENST00000621131 B4E1Z4 1266 aa7.44□□□□□ -1.22
VPS29-212ENST00000621131 TRAF5O00463 557 aa7.44□□□□□ -1.22
VPS29-212ENST00000621131 DVL2O14641 736 aa7.44□□□□□ -1.22
VPS29-212ENST00000621131 ARHGAP6O43182 974 aa7.44□□□□□ -1.22
VPS29-212ENST00000621131 HIP1RO75146 1068 aa7.44□□□□□ -1.22
VPS29-212ENST00000621131 DNAJC8O75937 253 aaPredicted RBP7.44□□□□□ -1.22
VPS29-212ENST00000621131 GLRX3O76003 335 aaKnown RBP7.44□□□□□ -1.22
VPS29-212ENST00000621131 IGFALSP35858 605 aa7.44□□□□□ -1.22
VPS29-212ENST00000621131 PCOLCEQ15113 449 aa7.44□□□□□ -1.22
VPS29-212ENST00000621131 AGBL4Q5VU57 503 aa7.44□□□□□ -1.22
VPS29-212ENST00000621131 GRAMD4Q6IC98 578 aa7.44□□□□□ -1.22
VPS29-212ENST00000621131 KRTAP5-3Q6L8H2 238 aa7.44□□□□□ -1.22
VPS29-212ENST00000621131 Q6ZSN1 163 aa7.44□□□□□ -1.22
VPS29-212ENST00000621131 USP30Q70CQ3 517 aa7.44□□□□□ -1.22
VPS29-212ENST00000621131 OTOP2Q7RTS6 562 aa7.44□□□□□ -1.22
VPS29-212ENST00000621131 DDX53Q86TM3 631 aaKnown RBP7.44□□□□□ -1.22
VPS29-212ENST00000621131 FUKQ8N0W3 1084 aa7.44□□□□□ -1.22
VPS29-212ENST00000621131 BCL6BQ8N143 479 aaPredicted RBP7.44□□□□□ -1.22
VPS29-212ENST00000621131 MRFAP1L1Q96HT8 127 aa7.44□□□□□ -1.22
VPS29-212ENST00000621131 LAMC3Q9Y6N6 1575 aa7.44□□□□□ -1.22
Retrieved 100 of 20,778 RNA–protein pairs in 27.9 ms