RNA–Protein interactions for RNA: ENST00000620786.4

CLIP1-219, Transcript of CAP-Gly domain containing linker protein 1, humanhuman

APPRIS ALT2 TSL 5 BASIC

Gene CLIP1, Length 5,913 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLIP1-219ENST00000620786 HINFPQ9BQA5 517 aa12.25□□□□□ -0.45
CLIP1-219ENST00000620786 MMTAG2Q9BU76 263 aaKnown RBP12.25□□□□□ -0.45
CLIP1-219ENST00000620786 HPCAL4Q9UM19 191 aa12.25□□□□□ -0.45
CLIP1-219ENST00000620786 LRRC63Q05C16 580 aa12.25□□□□□ -0.45
CLIP1-219ENST00000620786 LBHD1Q9BQE6 289 aaPredicted RBP12.25□□□□□ -0.45
CLIP1-219ENST00000620786 GPBP1L1Q9HC44 474 aaPredicted RBP12.25□□□□□ -0.45
CLIP1-219ENST00000620786 KIAA1586Q9HCI6 787 aa12.25□□□□□ -0.45
CLIP1-219ENST00000620786 SNAPC2Q13487 334 aa12.25□□□□□ -0.45
CLIP1-219ENST00000620786 SFR1Q86XK3 245 aa12.25□□□□□ -0.45
CLIP1-219ENST00000620786 LMNTD2Q8IXW0 634 aa12.25□□□□□ -0.45
CLIP1-219ENST00000620786 YAF2Q8IY57 180 aa12.25□□□□□ -0.45
CLIP1-219ENST00000620786 NUDCD1Q96RS6 583 aa12.25□□□□□ -0.45
CLIP1-219ENST00000620786 TLK1Q9UKI8 766 aa12.25□□□□□ -0.45
CLIP1-219ENST00000620786 CLTCL1P53675 1640 aa12.24□□□□□ -0.45
CLIP1-219ENST00000620786 ENC1O14682 589 aa12.24□□□□□ -0.45
CLIP1-219ENST00000620786 MOCS3O95396 460 aa12.24□□□□□ -0.45
CLIP1-219ENST00000620786 KCNJ6P48051 423 aa12.24□□□□□ -0.45
CLIP1-219ENST00000620786 GTF2A1P52655 376 aaPredicted RBP12.24□□□□□ -0.45
CLIP1-219ENST00000620786 STX1BP61266 288 aa12.24□□□□□ -0.45
CLIP1-219ENST00000620786 SCARF1Q14162 830 aa12.24□□□□□ -0.45
CLIP1-219ENST00000620786 BRD3Q15059 726 aa12.24□□□□□ -0.45
CLIP1-219ENST00000620786 PNMA8AQ86V59 439 aaPredicted RBP12.24□□□□□ -0.45
CLIP1-219ENST00000620786 C10orf67Q8IYJ2 551 aa12.24□□□□□ -0.45
CLIP1-219ENST00000620786 TBC1D16Q8TBP0 767 aa12.24□□□□□ -0.45
CLIP1-219ENST00000620786 DEPDC1BQ8WUY9 529 aa12.24□□□□□ -0.45
CLIP1-219ENST00000620786 ISCA1Q9BUE6 129 aa12.24□□□□□ -0.45
CLIP1-219ENST00000620786 STK38LQ9Y2H1 464 aa12.24□□□□□ -0.45
CLIP1-219ENST00000620786 FIS1Q9Y3D6 152 aa12.24□□□□□ -0.45
CLIP1-219ENST00000620786 NVLO15381 856 aaKnown RBP12.24□□□□□ -0.45
CLIP1-219ENST00000620786 ZBED1O96006 694 aa12.24□□□□□ -0.45
CLIP1-219ENST00000620786 CPB1P15086 417 aa12.24□□□□□ -0.45
CLIP1-219ENST00000620786 KPNA2P52292 529 aaKnown RBP12.24□□□□□ -0.45
CLIP1-219ENST00000620786 MAP3K21Q5TCX8 1036 aa12.24□□□□□ -0.45
CLIP1-219ENST00000620786 TRMT2AQ8IZ69 625 aaKnown RBP12.24□□□□□ -0.45
CLIP1-219ENST00000620786 PARK7Q99497 189 aaKnown RBP12.24□□□□□ -0.45
CLIP1-219ENST00000620786 FAM114A2Q9NRY5 505 aa12.24□□□□□ -0.45
CLIP1-219ENST00000620786 SCINQ9Y6U3 715 aa12.24□□□□□ -0.45
CLIP1-219ENST00000620786 MSH2P43246 934 aa12.24□□□□□ -0.45
CLIP1-219ENST00000620786 TSNAXIP1Q2TAA8 658 aa12.24□□□□□ -0.45
CLIP1-219ENST00000620786 RAD54LQ92698 747 aa12.24□□□□□ -0.45
CLIP1-219ENST00000620786 CRAMP1Q96RY5 1269 aa12.24□□□□□ -0.45
CLIP1-219ENST00000620786 NGRNQ9NPE2 291 aaKnown RBP12.24□□□□□ -0.45
CLIP1-219ENST00000620786 NEMP1O14524 444 aa12.24□□□□□ -0.45
CLIP1-219ENST00000620786 P4HBP07237 508 aaKnown RBP12.24□□□□□ -0.45
CLIP1-219ENST00000620786 FDX1P10109 184 aa12.24□□□□□ -0.45
CLIP1-219ENST00000620786 QRICH1Q2TAL8 776 aa12.24□□□□□ -0.45
CLIP1-219ENST00000620786 NRKQ7Z2Y5 1582 aa12.24□□□□□ -0.45
CLIP1-219ENST00000620786 FTCDO95954 541 aa12.24□□□□□ -0.45
CLIP1-219ENST00000620786 TRIP13Q15645 432 aaPredicted RBP12.24□□□□□ -0.45
CLIP1-219ENST00000620786 POTEDQ86YR6 584 aa12.24□□□□□ -0.45
CLIP1-219ENST00000620786 ENAHQ8N8S7 591 aaPredicted RBP12.24□□□□□ -0.45
CLIP1-219ENST00000620786 DDX55Q8NHQ9 600 aaKnown RBP eCLIP12.24□□□□□ -0.45
CLIP1-219ENST00000620786 NEK9Q8TD19 979 aa12.24□□□□□ -0.45
CLIP1-219ENST00000620786 IGSF3O75054 1194 aa12.23□□□□□ -0.45
CLIP1-219ENST00000620786 NNMTP40261 264 aa12.23□□□□□ -0.45
CLIP1-219ENST00000620786 QARSP47897 775 aaKnown RBP12.23□□□□□ -0.45
CLIP1-219ENST00000620786 C10orf76Q5T2E6 689 aa12.23□□□□□ -0.45
CLIP1-219ENST00000620786 C11orf57Q6ZUT1 292 aaPredicted RBP12.23□□□□□ -0.45
CLIP1-219ENST00000620786 BZW1Q7L1Q6 419 aaKnown RBP12.23□□□□□ -0.45
CLIP1-219ENST00000620786 CHAMP1Q96JM3 812 aa12.23□□□□□ -0.45
CLIP1-219ENST00000620786 FAM84BQ96KN1 310 aaPredicted RBP12.23□□□□□ -0.45
CLIP1-219ENST00000620786 FAM20AQ96MK3 541 aa12.23□□□□□ -0.45
CLIP1-219ENST00000620786 MRPL4Q9BYD3 311 aaKnown RBP12.23□□□□□ -0.45
CLIP1-219ENST00000620786 NHEJ1Q9H9Q4 299 aaPredicted RBP12.23□□□□□ -0.45
CLIP1-219ENST00000620786 IKBKBO14920 756 aa12.23□□□□□ -0.45
CLIP1-219ENST00000620786 EIF4A3P38919 411 aaKnown RBP12.23□□□□□ -0.45
CLIP1-219ENST00000620786 LRRC31Q6UY01 552 aa12.23□□□□□ -0.45
CLIP1-219ENST00000620786 HVCN1Q96D96 273 aa12.23□□□□□ -0.45
CLIP1-219ENST00000620786 LRGUKQ96M69 825 aa12.23□□□□□ -0.45
CLIP1-219ENST00000620786 HAUS8Q9BT25 410 aa12.23□□□□□ -0.45
CLIP1-219ENST00000620786 DAAM1Q9Y4D1 1078 aa12.23□□□□□ -0.45
CLIP1-219ENST00000620786 E9PMD0 336 aa12.23□□□□□ -0.45
CLIP1-219ENST00000620786 LARGE1O95461 756 aa12.23□□□□□ -0.45
CLIP1-219ENST00000620786 KIAA1755Q5JYT7 1200 aa12.23□□□□□ -0.45
CLIP1-219ENST00000620786 CDC26Q8NHZ8 85 aa12.23□□□□□ -0.45
CLIP1-219ENST00000620786 CCHCR1Q8TD31 782 aa12.23□□□□□ -0.45
CLIP1-219ENST00000620786 SPZ1Q9BXG8 430 aa12.23□□□□□ -0.45
CLIP1-219ENST00000620786 PPP1R12CQ9BZL4 782 aa12.23□□□□□ -0.45
CLIP1-219ENST00000620786 NDST4Q9H3R1 872 aa12.23□□□□□ -0.45
CLIP1-219ENST00000620786 SUGT1Q9Y2Z0 365 aa12.23□□□□□ -0.45
CLIP1-219ENST00000620786 SPATA31A1Q5TZJ5 1347 aa12.23□□□□□ -0.45
CLIP1-219ENST00000620786 TXNP10599 105 aaKnown RBP12.23□□□□□ -0.45
CLIP1-219ENST00000620786 ARHGAP25P42331 645 aa12.23□□□□□ -0.45
CLIP1-219ENST00000620786 COG7P83436 770 aa12.23□□□□□ -0.45
CLIP1-219ENST00000620786 ANGEL2Q5VTE6 544 aaKnown RBP12.23□□□□□ -0.45
CLIP1-219ENST00000620786 UNC13DQ70J99 1090 aa12.23□□□□□ -0.45
CLIP1-219ENST00000620786 SLC35F6Q8N357 371 aa12.23□□□□□ -0.45
CLIP1-219ENST00000620786 CEP120Q8N960 986 aa12.23□□□□□ -0.45
CLIP1-219ENST00000620786 PDCD6IPQ8WUM4 868 aaKnown RBP12.23□□□□□ -0.45
CLIP1-219ENST00000620786 IFT43Q96FT9 208 aa12.23□□□□□ -0.45
CLIP1-219ENST00000620786 SAMSN1Q9NSI8 373 aaKnown RBP12.23□□□□□ -0.45
CLIP1-219ENST00000620786 PGRMC1O00264 195 aaKnown RBP12.22□□□□□ -0.45
CLIP1-219ENST00000620786 PSMC5P62195 406 aa12.22□□□□□ -0.45
CLIP1-219ENST00000620786 IL1RL1Q01638 556 aa12.22□□□□□ -0.45
CLIP1-219ENST00000620786 CYP27A1Q02318 531 aa12.22□□□□□ -0.45
CLIP1-219ENST00000620786 TMED2Q15363 201 aa12.22□□□□□ -0.45
CLIP1-219ENST00000620786 DBN1Q16643 649 aa12.22□□□□□ -0.45
CLIP1-219ENST00000620786 PPP6R3Q5H9R7 873 aaPredicted RBP12.22□□□□□ -0.45
CLIP1-219ENST00000620786 STRIP1Q5VSL9 837 aa12.22□□□□□ -0.45
CLIP1-219ENST00000620786 SPOPLQ6IQ16 392 aa12.22□□□□□ -0.45
Retrieved 100 of 20,778 RNA–protein pairs in 15.2 ms