RNA–Protein interactions for RNA: ENST00000618700.4

UPF3A-211, Transcript of UPF3A, regulator of nonsense mediated mRNA decay, humanhuman

TSL 2

Gene UPF3A, Length 1,210 nt, Biotype retained intron.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF3A-211ENST00000618700 GRIK4Q16099 956 aa22.04■■□□□ 1.12
UPF3A-211ENST00000618700 LRRC26Q2I0M4 334 aa22.04■■□□□ 1.12
UPF3A-211ENST00000618700 LMBR1Q8WVP7 490 aa22.04■■□□□ 1.12
UPF3A-211ENST00000618700 NIFKQ9BYG3 293 aaKnown RBP22.04■■□□□ 1.12
UPF3A-211ENST00000618700 NRBP2Q9NSY0 501 aa22.04■■□□□ 1.12
UPF3A-211ENST00000618700 SETD4Q9NVD3 440 aa22.04■■□□□ 1.12
UPF3A-211ENST00000618700 SEPT9Q9UHD8 586 aaPredicted RBP22.04■■□□□ 1.12
UPF3A-211ENST00000618700 ZBTB39O15060 712 aa22.03■■□□□ 1.12
UPF3A-211ENST00000618700 KARSQ15046 597 aaKnown RBP22.03■■□□□ 1.12
UPF3A-211ENST00000618700 FAM47CQ5HY64 1035 aa22.03■■□□□ 1.12
UPF3A-211ENST00000618700 ZNF484Q5JVG2 852 aa22.03■■□□□ 1.12
UPF3A-211ENST00000618700 RESP18Q5W5W9 173 aa22.03■■□□□ 1.12
UPF3A-211ENST00000618700 PLA2G4FQ68DD2 849 aa22.03■■□□□ 1.12
UPF3A-211ENST00000618700 ADALQ6DHV7 355 aa22.03■■□□□ 1.12
UPF3A-211ENST00000618700 GDF6Q6KF10 455 aaPredicted RBP22.03■■□□□ 1.12
UPF3A-211ENST00000618700 ANKRD33Q7Z3H0 272 aa22.03■■□□□ 1.12
UPF3A-211ENST00000618700 FAM126BQ8IXS8 530 aa22.03■■□□□ 1.12
UPF3A-211ENST00000618700 KCTD17Q8N5Z5 321 aa22.03■■□□□ 1.12
UPF3A-211ENST00000618700 TMEM87AQ8NBN3 555 aa22.03■■□□□ 1.12
UPF3A-211ENST00000618700 CEP89Q96ST8 783 aa22.03■■□□□ 1.12
UPF3A-211ENST00000618700 NT5C3AQ9H0P0 336 aa22.03■■□□□ 1.12
UPF3A-211ENST00000618700 ANKEF1Q9NU02 776 aa22.03■■□□□ 1.12
UPF3A-211ENST00000618700 DDX19AQ9NUU7 478 aaKnown RBP22.03■■□□□ 1.12
UPF3A-211ENST00000618700 KIAA1024Q9UPX6 916 aa22.03■■□□□ 1.12
UPF3A-211ENST00000618700 ARID2Q68CP9 1835 aa22.03■■□□□ 1.12
UPF3A-211ENST00000618700 C17orf102A2RUQ5 167 aa22.02■■□□□ 1.12
UPF3A-211ENST00000618700 MBLAC1A4D2B0 266 aaPredicted RBP22.02■■□□□ 1.12
UPF3A-211ENST00000618700 RRN3P2A6NIE6 340 aa22.02■■□□□ 1.12
UPF3A-211ENST00000618700 DDX11L8A8MPP1 907 aa22.02■■□□□ 1.12
UPF3A-211ENST00000618700 XRCC6P12956 609 aaKnown RBP eCLIP22.02■■□□□ 1.12
UPF3A-211ENST00000618700 TXLNAP40222 546 aa22.02■■□□□ 1.12
UPF3A-211ENST00000618700 TRIM60Q495X7 471 aa22.02■■□□□ 1.12
UPF3A-211ENST00000618700 MARCH8Q5T0T0 291 aa22.02■■□□□ 1.12
UPF3A-211ENST00000618700 TRMT1LQ7Z2T5 733 aaKnown RBP22.02■■□□□ 1.12
UPF3A-211ENST00000618700 KCNK18Q7Z418 384 aa22.02■■□□□ 1.12
UPF3A-211ENST00000618700 PIGOQ8TEQ8 1089 aa22.02■■□□□ 1.12
UPF3A-211ENST00000618700 LRRC15Q8TF66 581 aa22.02■■□□□ 1.12
UPF3A-211ENST00000618700 MS4A3Q96HJ5 214 aa22.02■■□□□ 1.12
UPF3A-211ENST00000618700 NACC1Q96RE7 527 aa22.02■■□□□ 1.12
UPF3A-211ENST00000618700 CTAGE1Q96RT6 745 aa22.02■■□□□ 1.12
UPF3A-211ENST00000618700 DBR1Q9UK59 544 aaKnown RBP22.02■■□□□ 1.12
UPF3A-211ENST00000618700 MROH7Q68CQ1 1323 aa22.02■■□□□ 1.12
UPF3A-211ENST00000618700 ALPK3Q96L96 1907 aa22.02■■□□□ 1.11
UPF3A-211ENST00000618700 TNRC18O15417 2968 aaPredicted RBP22.01■■□□□ 1.11
UPF3A-211ENST00000618700 A0A087X0B3 334 aa22.01■■□□□ 1.11
UPF3A-211ENST00000618700 A0A1W2PQ27 194 aa22.01■■□□□ 1.11
UPF3A-211ENST00000618700 A0A1W2PQ64 194 aa22.01■■□□□ 1.11
UPF3A-211ENST00000618700 A0A1W2PQD8 194 aa22.01■■□□□ 1.11
UPF3A-211ENST00000618700 PLCG1P19174 1290 aa22.01■■□□□ 1.11
UPF3A-211ENST00000618700 RTP1P59025 263 aa22.01■■□□□ 1.11
UPF3A-211ENST00000618700 ZNF200P98182 395 aaPredicted RBP22.01■■□□□ 1.11
UPF3A-211ENST00000618700 OTUD6AQ7L8S5 288 aa22.01■■□□□ 1.11
UPF3A-211ENST00000618700 TRAPPC12Q8WVT3 735 aa22.01■■□□□ 1.11
UPF3A-211ENST00000618700 CALML4Q96GE6 196 aa22.01■■□□□ 1.11
UPF3A-211ENST00000618700 CDK5RAP3Q96JB5 506 aa22.01■■□□□ 1.11
UPF3A-211ENST00000618700 TOX2Q96NM4 488 aa22.01■■□□□ 1.11
UPF3A-211ENST00000618700 CYP26B1Q9NR63 512 aa22.01■■□□□ 1.11
UPF3A-211ENST00000618700 PPME1Q9Y570 386 aa22.01■■□□□ 1.11
UPF3A-211ENST00000618700 B4GALT4O60513 344 aa22■■□□□ 1.11
UPF3A-211ENST00000618700 CD4P01730 458 aa22■■□□□ 1.11
UPF3A-211ENST00000618700 GNAT1P11488 350 aa22■■□□□ 1.11
UPF3A-211ENST00000618700 CMA1P23946 247 aa22■■□□□ 1.11
UPF3A-211ENST00000618700 RARRES1P49788 294 aa22■■□□□ 1.11
UPF3A-211ENST00000618700 NPEPPSP55786 919 aa22■■□□□ 1.11
UPF3A-211ENST00000618700 ZRSR1Q15695 479 aaKnown RBP22■■□□□ 1.11
UPF3A-211ENST00000618700 CSPP1Q1MSJ5 1256 aa22■■□□□ 1.11
UPF3A-211ENST00000618700 MTERF2Q49AM1 385 aa22■■□□□ 1.11
UPF3A-211ENST00000618700 TRMT13Q9NUP7 481 aaKnown RBP22■■□□□ 1.11
UPF3A-211ENST00000618700 TUBE1Q9UJT0 475 aa22■■□□□ 1.11
UPF3A-211ENST00000618700 LOXHD1Q8IVV2 1947 aa22■■□□□ 1.11
UPF3A-211ENST00000618700 A0A087WWV3 80 aa21.99■■□□□ 1.11
UPF3A-211ENST00000618700 FAM237AA0A1B0GTK4 181 aa21.99■■□□□ 1.11
UPF3A-211ENST00000618700 E9PMD0 336 aa21.99■■□□□ 1.11
UPF3A-211ENST00000618700 TREHO43280 583 aa21.99■■□□□ 1.11
UPF3A-211ENST00000618700 PQBP1O60828 265 aaKnown RBP21.99■■□□□ 1.11
UPF3A-211ENST00000618700 C22orf31O95567 290 aa21.99■■□□□ 1.11
UPF3A-211ENST00000618700 EYA4O95677 639 aa21.99■■□□□ 1.11
UPF3A-211ENST00000618700 IGBP1P78318 339 aa21.99■■□□□ 1.11
UPF3A-211ENST00000618700 TLE2Q04725 743 aa21.99■■□□□ 1.11
UPF3A-211ENST00000618700 CEP170P1Q96L14 293 aa21.99■■□□□ 1.11
UPF3A-211ENST00000618700 PLIN2Q99541 437 aa21.99■■□□□ 1.11
UPF3A-211ENST00000618700 SH2D3AQ9BRG2 576 aa21.99■■□□□ 1.11
UPF3A-211ENST00000618700 TRPV6Q9H1D0 765 aa21.99■■□□□ 1.11
UPF3A-211ENST00000618700 BLOC1S4Q9NUP1 217 aa21.99■■□□□ 1.11
UPF3A-211ENST00000618700 CCDC39Q9UFE4 941 aa21.99■■□□□ 1.11
UPF3A-211ENST00000618700 DNM3Q9UQ16 869 aa21.99■■□□□ 1.11
UPF3A-211ENST00000618700 HPSEQ9Y251 543 aa21.99■■□□□ 1.11
UPF3A-211ENST00000618700 TRIP12Q14669 1992 aaPredicted RBP21.98■■□□□ 1.11
UPF3A-211ENST00000618700 KAT6AQ92794 2004 aa21.98■■□□□ 1.11
UPF3A-211ENST00000618700 PTGISQ16647 500 aa21.98■■□□□ 1.11
UPF3A-211ENST00000618700 XKR9Q5GH70 373 aa21.98■■□□□ 1.11
UPF3A-211ENST00000618700 MTHFD1LQ6UB35 978 aa21.98■■□□□ 1.11
UPF3A-211ENST00000618700 SERINC5Q86VE9 423 aa21.98■■□□□ 1.11
UPF3A-211ENST00000618700 RASSF8Q8NHQ8 419 aa21.98■■□□□ 1.11
UPF3A-211ENST00000618700 ZBTB10Q96DT7 871 aa21.98■■□□□ 1.11
UPF3A-211ENST00000618700 FAM13BQ9NYF5 915 aa21.98■■□□□ 1.11
UPF3A-211ENST00000618700 STK17AQ9UEE5 414 aa21.98■■□□□ 1.11
UPF3A-211ENST00000618700 ATP11BQ9Y2G3 1177 aa21.98■■□□□ 1.11
UPF3A-211ENST00000618700 PFKFB1P16118 471 aa21.97■■□□□ 1.11
UPF3A-211ENST00000618700 KLRC1P26715 233 aa21.97■■□□□ 1.11
Retrieved 100 of 20,778 RNA–protein pairs in 27.9 ms