RNA–Protein interactions for RNA: ENST00000600012.5

UPF1-208, Transcript of UPF1, RNA helicase and ATPase, humanhuman

TSL 5

Gene UPF1, Length 501 nt, Biotype processed transcript, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF1-208ENST00000600012 YEATS4O95619 227 aa14.29□□□□□ -0.12
UPF1-208ENST00000600012 CTSHP09668 335 aa14.29□□□□□ -0.12
UPF1-208ENST00000600012 PTPAQ15257 358 aa14.29□□□□□ -0.12
UPF1-208ENST00000600012 PTPROQ16827 1216 aa14.29□□□□□ -0.12
UPF1-208ENST00000600012 LEXMQ3ZCV2 418 aa14.29□□□□□ -0.12
UPF1-208ENST00000600012 PCNX4Q63HM2 1172 aa14.29□□□□□ -0.12
UPF1-208ENST00000600012 TRIM50Q86XT4 487 aa14.29□□□□□ -0.12
UPF1-208ENST00000600012 LINC00301Q8NCQ3 95 aa14.29□□□□□ -0.12
UPF1-208ENST00000600012 TBCKQ8TEA7 893 aa14.29□□□□□ -0.12
UPF1-208ENST00000600012 APBB2Q92870 758 aa14.29□□□□□ -0.12
UPF1-208ENST00000600012 TOP1MTQ969P6 601 aa14.29□□□□□ -0.12
UPF1-208ENST00000600012 MRPL38Q96DV4 380 aaKnown RBP14.29□□□□□ -0.12
UPF1-208ENST00000600012 FAM122AQ96E09 287 aa14.29□□□□□ -0.12
UPF1-208ENST00000600012 YME1L1Q96TA2 773 aa14.29□□□□□ -0.12
UPF1-208ENST00000600012 SENP7Q9BQF6 1050 aa14.29□□□□□ -0.12
UPF1-208ENST00000600012 EIF4ENIF1Q9NRA8 985 aaKnown RBP14.29□□□□□ -0.12
UPF1-208ENST00000600012 SETD4Q9NVD3 440 aa14.29□□□□□ -0.12
UPF1-208ENST00000600012 RCOR1Q9UKL0 485 aa14.29□□□□□ -0.12
UPF1-208ENST00000600012 RBAK-RBAKDNI3L0D1 243 aa14.28□□□□□ -0.12
UPF1-208ENST00000600012 PIK3CDO00329 1044 aa14.28□□□□□ -0.12
UPF1-208ENST00000600012 PTMSP20962 102 aa14.28□□□□□ -0.12
UPF1-208ENST00000600012 TRAPPC10P48553 1259 aa14.28□□□□□ -0.12
UPF1-208ENST00000600012 ADAM17P78536 824 aa14.28□□□□□ -0.12
UPF1-208ENST00000600012 ZNF174Q15697 407 aa14.28□□□□□ -0.12
UPF1-208ENST00000600012 EPC2Q52LR7 807 aa14.28□□□□□ -0.12
UPF1-208ENST00000600012 TIGD5Q53EQ6 642 aa14.28□□□□□ -0.12
UPF1-208ENST00000600012 TMEM31Q5JXX7 168 aa14.28□□□□□ -0.12
UPF1-208ENST00000600012 UTP14CQ5TAP6 766 aaKnown RBP14.28□□□□□ -0.12
UPF1-208ENST00000600012 NLRX1Q86UT6 975 aa14.28□□□□□ -0.12
UPF1-208ENST00000600012 GIMAP8Q8ND71 665 aaPredicted RBP14.28□□□□□ -0.12
UPF1-208ENST00000600012 LMBR1Q8WVP7 490 aa14.28□□□□□ -0.12
UPF1-208ENST00000600012 LRFN3Q9BTN0 628 aa14.28□□□□□ -0.12
UPF1-208ENST00000600012 ANO3Q9BYT9 981 aa14.28□□□□□ -0.12
UPF1-208ENST00000600012 MYO7AQ13402 2215 aa14.27□□□□□ -0.12
UPF1-208ENST00000600012 NRCAMQ92823 1304 aa14.27□□□□□ -0.12
UPF1-208ENST00000600012 SPTLC2O15270 562 aa14.27□□□□□ -0.13
UPF1-208ENST00000600012 KCNA5P22460 613 aa14.27□□□□□ -0.13
UPF1-208ENST00000600012 ARHGAP4P98171 946 aa14.27□□□□□ -0.13
UPF1-208ENST00000600012 AP3B2Q13367 1082 aa14.27□□□□□ -0.13
UPF1-208ENST00000600012 SLC39A14Q15043 492 aa14.27□□□□□ -0.13
UPF1-208ENST00000600012 LETM2Q2VYF4 491 aa14.27□□□□□ -0.13
UPF1-208ENST00000600012 FAM26DQ5JW98 314 aa14.27□□□□□ -0.13
UPF1-208ENST00000600012 NEK8Q86SG6 692 aa14.27□□□□□ -0.13
UPF1-208ENST00000600012 KCNG4Q8TDN1 519 aa14.27□□□□□ -0.13
UPF1-208ENST00000600012 IFIH1Q9BYX4 1025 aaKnown RBP14.27□□□□□ -0.13
UPF1-208ENST00000600012 HCN4Q9Y3Q4 1203 aa14.27□□□□□ -0.13
UPF1-208ENST00000600012 ARIH1Q9Y4X5 557 aaPredicted RBP14.27□□□□□ -0.13
UPF1-208ENST00000600012 LOC101059915A0A1B0GWI6 518 aaPredicted RBP14.26□□□□□ -0.13
UPF1-208ENST00000600012 SPDYE3A6NKU9 549 aa14.26□□□□□ -0.13
UPF1-208ENST00000600012 H3BNC9 293 aa14.26□□□□□ -0.13
UPF1-208ENST00000600012 EDIL3O43854 480 aa14.26□□□□□ -0.13
UPF1-208ENST00000600012 UPP2O95045 317 aa14.26□□□□□ -0.13
UPF1-208ENST00000600012 MARCKSP29966 332 aaPredicted RBP14.26□□□□□ -0.13
UPF1-208ENST00000600012 MCM7P33993 719 aa14.26□□□□□ -0.13
UPF1-208ENST00000600012 UBE2HP62256 183 aa14.26□□□□□ -0.13
UPF1-208ENST00000600012 SP4Q02446 784 aa14.26□□□□□ -0.13
UPF1-208ENST00000600012 GPM6BQ13491 265 aa14.26□□□□□ -0.13
UPF1-208ENST00000600012 TAF2Q6P1X5 1199 aa14.26□□□□□ -0.13
UPF1-208ENST00000600012 RPAINQ86UA6 219 aa14.26□□□□□ -0.13
UPF1-208ENST00000600012 FAM178BQ8IXR5 827 aa14.26□□□□□ -0.13
UPF1-208ENST00000600012 TMEM192Q8IY95 271 aa14.26□□□□□ -0.13
UPF1-208ENST00000600012 GPT2Q8TD30 523 aa14.26□□□□□ -0.13
UPF1-208ENST00000600012 GPRASP2Q96D09 838 aa14.26□□□□□ -0.13
UPF1-208ENST00000600012 CDHR1Q96JP9 859 aa14.26□□□□□ -0.13
UPF1-208ENST00000600012 OSBPL7Q9BZF2 842 aa14.26□□□□□ -0.13
UPF1-208ENST00000600012 PCDHA7Q9UN72 937 aa14.26□□□□□ -0.13
UPF1-208ENST00000600012 ATG2AQ2TAZ0 1938 aa14.25□□□□□ -0.13
UPF1-208ENST00000600012 TRAK2O60296 914 aa14.25□□□□□ -0.13
UPF1-208ENST00000600012 CCNT1O60563 726 aaKnown RBP14.25□□□□□ -0.13
UPF1-208ENST00000600012 GPR37L1O60883 481 aa14.25□□□□□ -0.13
UPF1-208ENST00000600012 TDP2O95551 362 aa14.25□□□□□ -0.13
UPF1-208ENST00000600012 TCF7P36402 384 aaPredicted RBP14.25□□□□□ -0.13
UPF1-208ENST00000600012 ME1P48163 572 aa14.25□□□□□ -0.13
UPF1-208ENST00000600012 PUS10Q3MIT2 529 aaKnown RBP14.25□□□□□ -0.13
UPF1-208ENST00000600012 MCTP2Q6DN12 878 aa14.25□□□□□ -0.13
UPF1-208ENST00000600012 PTCRAQ6ISU1 281 aaPredicted RBP14.25□□□□□ -0.13
UPF1-208ENST00000600012 BANK1Q8NDB2 785 aa14.25□□□□□ -0.13
UPF1-208ENST00000600012 GADD45GIP1Q8TAE8 222 aaPredicted RBP14.25□□□□□ -0.13
UPF1-208ENST00000600012 KHSRPQ92945 711 aaKnown RBP eCLIP14.25□□□□□ -0.13
UPF1-208ENST00000600012 CD320Q9NPF0 282 aa14.25□□□□□ -0.13
UPF1-208ENST00000600012 CEP131Q9UPN4 1083 aa14.25□□□□□ -0.13
UPF1-208ENST00000600012 TELO2Q9Y4R8 837 aa14.25□□□□□ -0.13
UPF1-208ENST00000600012 TTC3P53804 2025 aa14.25□□□□□ -0.13
UPF1-208ENST00000600012 GOLGA6L4A6NEF3 574 aa14.24□□□□□ -0.13
UPF1-208ENST00000600012 PI4K2BG5E9Z4 385 aa14.24□□□□□ -0.13
UPF1-208ENST00000600012 PPP6R2O75170 966 aa14.24□□□□□ -0.13
UPF1-208ENST00000600012 FOSP01100 380 aaPredicted RBP14.24□□□□□ -0.13
UPF1-208ENST00000600012 CHRNA1P02708 482 aa14.24□□□□□ -0.13
UPF1-208ENST00000600012 IL9P15248 144 aa14.24□□□□□ -0.13
UPF1-208ENST00000600012 KCNA2P16389 499 aa14.24□□□□□ -0.13
UPF1-208ENST00000600012 GRIN1Q05586 938 aa14.24□□□□□ -0.13
UPF1-208ENST00000600012 PPFIA1Q13136 1202 aa14.24□□□□□ -0.13
UPF1-208ENST00000600012 PTGDRQ13258 359 aa14.24□□□□□ -0.13
UPF1-208ENST00000600012 RSPH3Q86UC2 560 aa14.24□□□□□ -0.13
UPF1-208ENST00000600012 GJD3Q8N144 294 aa14.24□□□□□ -0.13
UPF1-208ENST00000600012 NEK9Q8TD19 979 aa14.24□□□□□ -0.13
UPF1-208ENST00000600012 ERAP1Q9NZ08 941 aa14.24□□□□□ -0.13
UPF1-208ENST00000600012 GRXCR2A6NFK2 248 aa14.23□□□□□ -0.13
UPF1-208ENST00000600012 NEMFO60524 1076 aa14.23□□□□□ -0.13
UPF1-208ENST00000600012 BMP15O95972 392 aa14.23□□□□□ -0.13
Retrieved 100 of 20,778 RNA–protein pairs in 23.2 ms