RNA–Protein interactions for RNA: ENST00000599833.1

SHKBP1-221, Transcript of SH3KBP1 binding protein 1, humanhuman

TSL 2

Gene SHKBP1, Length 761 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHKBP1-221ENST00000599833 XKR3Q5GH77 459 aa21.9■■□□□ 1.1
SHKBP1-221ENST00000599833 TRMT1LQ7Z2T5 733 aaKnown RBP21.9■■□□□ 1.1
SHKBP1-221ENST00000599833 BRAPQ7Z569 592 aa21.9■■□□□ 1.1
SHKBP1-221ENST00000599833 C4orf19Q8IY42 314 aa21.9■■□□□ 1.1
SHKBP1-221ENST00000599833 CKAP2LQ8IYA6 745 aa21.9■■□□□ 1.1
SHKBP1-221ENST00000599833 KIAA0319LQ8IZA0 1049 aa21.9■■□□□ 1.1
SHKBP1-221ENST00000599833 HERVK_113Q902F9 699 aa21.9■■□□□ 1.1
SHKBP1-221ENST00000599833 TNPO1Q92973 898 aaKnown RBP21.9■■□□□ 1.1
SHKBP1-221ENST00000599833 CXXC1Q9P0U4 656 aaPredicted RBP21.9■■□□□ 1.1
SHKBP1-221ENST00000599833 IGKV6-21A0A0C4DH24 114 aa21.89■■□□□ 1.09
SHKBP1-221ENST00000599833 RSPH10B2B2RC85 870 aa21.89■■□□□ 1.09
SHKBP1-221ENST00000599833 ZBTB39O15060 712 aa21.89■■□□□ 1.09
SHKBP1-221ENST00000599833 STX6O43752 255 aa21.89■■□□□ 1.09
SHKBP1-221ENST00000599833 LYPLA2O95372 231 aa21.89■■□□□ 1.09
SHKBP1-221ENST00000599833 RSPH10BP0C881 870 aa21.89■■□□□ 1.09
SHKBP1-221ENST00000599833 TECP42680 631 aa21.89■■□□□ 1.09
SHKBP1-221ENST00000599833 CTTNQ14247 550 aaKnown RBP21.89■■□□□ 1.09
SHKBP1-221ENST00000599833 PSRC1Q6PGN9 363 aaPredicted RBP21.89■■□□□ 1.09
SHKBP1-221ENST00000599833 DEFB128Q7Z7B8 93 aa21.89■■□□□ 1.09
SHKBP1-221ENST00000599833 IGSF22Q8N9C0 903 aa21.89■■□□□ 1.09
SHKBP1-221ENST00000599833 SH2D3AQ9BRG2 576 aa21.89■■□□□ 1.09
SHKBP1-221ENST00000599833 GBF1Q92538 1859 aa21.88■■□□□ 1.09
SHKBP1-221ENST00000599833 MARCH6O60337 910 aa21.88■■□□□ 1.09
SHKBP1-221ENST00000599833 PFKMP08237 780 aa21.88■■□□□ 1.09
SHKBP1-221ENST00000599833 CTSHP09668 335 aa21.88■■□□□ 1.09
SHKBP1-221ENST00000599833 PRPHP41219 470 aa21.88■■□□□ 1.09
SHKBP1-221ENST00000599833 FXR1P51114 621 aaKnown RBP eCLIP21.88■■□□□ 1.09
SHKBP1-221ENST00000599833 CYP4A11Q02928 519 aa21.88■■□□□ 1.09
SHKBP1-221ENST00000599833 PKP1Q13835 747 aa21.88■■□□□ 1.09
SHKBP1-221ENST00000599833 PLA2G4FQ68DD2 849 aa21.88■■□□□ 1.09
SHKBP1-221ENST00000599833 FAM173BQ6P4H8 233 aa21.88■■□□□ 1.09
SHKBP1-221ENST00000599833 NRBP2Q9NSY0 501 aa21.88■■□□□ 1.09
SHKBP1-221ENST00000599833 MED24O75448 989 aa21.87■■□□□ 1.09
SHKBP1-221ENST00000599833 PARNO95453 639 aaKnown RBP21.87■■□□□ 1.09
SHKBP1-221ENST00000599833 NPEPPSP55786 919 aa21.87■■□□□ 1.09
SHKBP1-221ENST00000599833 ECM1Q16610 540 aa21.87■■□□□ 1.09
SHKBP1-221ENST00000599833 FAM109BQ6ICB4 259 aaPredicted RBP21.87■■□□□ 1.09
SHKBP1-221ENST00000599833 RPUSD2Q8IZ73 545 aaKnown RBP21.87■■□□□ 1.09
SHKBP1-221ENST00000599833 NEK9Q8TD19 979 aa21.87■■□□□ 1.09
SHKBP1-221ENST00000599833 FTOQ9C0B1 505 aaKnown RBP eCLIP21.87■■□□□ 1.09
SHKBP1-221ENST00000599833 FAM49AQ9H0Q0 323 aaPredicted RBP21.87■■□□□ 1.09
SHKBP1-221ENST00000599833 ZSWIM4Q9H7M6 989 aa21.87■■□□□ 1.09
SHKBP1-221ENST00000599833 SEPT9Q9UHD8 586 aaPredicted RBP21.87■■□□□ 1.09
SHKBP1-221ENST00000599833 CEP131Q9UPN4 1083 aa21.87■■□□□ 1.09
SHKBP1-221ENST00000599833 KDM3AQ9Y4C1 1321 aa21.86■■□□□ 1.09
SHKBP1-221ENST00000599833 LAD1O00515 517 aa21.86■■□□□ 1.09
SHKBP1-221ENST00000599833 FGBP02675 491 aa21.86■■□□□ 1.09
SHKBP1-221ENST00000599833 MRPS6P82932 125 aaKnown RBP21.86■■□□□ 1.09
SHKBP1-221ENST00000599833 DRP2Q13474 957 aa21.86■■□□□ 1.09
SHKBP1-221ENST00000599833 PTPAQ15257 358 aa21.86■■□□□ 1.09
SHKBP1-221ENST00000599833 PLEKHG4Q58EX7 1191 aa21.86■■□□□ 1.09
SHKBP1-221ENST00000599833 OTOP2Q7RTS6 562 aa21.86■■□□□ 1.09
SHKBP1-221ENST00000599833 CATSPER3Q86XQ3 398 aa21.86■■□□□ 1.09
SHKBP1-221ENST00000599833 MMTAG2Q9BU76 263 aaKnown RBP21.86■■□□□ 1.09
SHKBP1-221ENST00000599833 POLR3CQ9BUI4 534 aaPredicted RBP21.86■■□□□ 1.09
SHKBP1-221ENST00000599833 CDHR5Q9HBB8 845 aa21.86■■□□□ 1.09
SHKBP1-221ENST00000599833 CDY2AQ9Y6F7 541 aa21.86■■□□□ 1.09
SHKBP1-221ENST00000599833 DDX11L8A8MPP1 907 aa21.85■■□□□ 1.09
SHKBP1-221ENST00000599833 MAFO75444 373 aaPredicted RBP21.85■■□□□ 1.09
SHKBP1-221ENST00000599833 YWHABP31946 246 aaKnown RBP21.85■■□□□ 1.09
SHKBP1-221ENST00000599833 PDIA5Q14554 519 aa21.85■■□□□ 1.09
SHKBP1-221ENST00000599833 LPIN1Q14693 890 aa21.85■■□□□ 1.09
SHKBP1-221ENST00000599833 MTERF2Q49AM1 385 aa21.85■■□□□ 1.09
SHKBP1-221ENST00000599833 NME8Q8N427 588 aa21.85■■□□□ 1.09
SHKBP1-221ENST00000599833 LRRC71Q8N4P6 559 aa21.85■■□□□ 1.09
SHKBP1-221ENST00000599833 RNPC3Q96LT9 517 aaKnown RBP21.85■■□□□ 1.09
SHKBP1-221ENST00000599833 CYP26B1Q9NR63 512 aa21.85■■□□□ 1.09
SHKBP1-221ENST00000599833 EYSQ5T1H1 3165 aa21.84■■□□□ 1.09
SHKBP1-221ENST00000599833 MAGEB2O15479 319 aa21.84■■□□□ 1.09
SHKBP1-221ENST00000599833 GPR32O75388 356 aa21.84■■□□□ 1.09
SHKBP1-221ENST00000599833 RPLP2P05387 115 aaKnown RBP21.84■■□□□ 1.09
SHKBP1-221ENST00000599833 CLCN3P51790 818 aa21.84■■□□□ 1.09
SHKBP1-221ENST00000599833 TMEM62Q0P6H9 643 aa21.84■■□□□ 1.09
SHKBP1-221ENST00000599833 FBXO47Q5MNV8 452 aa21.84■■□□□ 1.09
SHKBP1-221ENST00000599833 TPH2Q8IWU9 490 aa21.84■■□□□ 1.09
SHKBP1-221ENST00000599833 SPRYD3Q8NCJ5 442 aa21.84■■□□□ 1.09
SHKBP1-221ENST00000599833 TMEM40Q8WWA1 233 aa21.84■■□□□ 1.09
SHKBP1-221ENST00000599833 DHX33Q9H6R0 707 aaKnown RBP21.84■■□□□ 1.09
SHKBP1-221ENST00000599833 AGO3Q9H9G7 860 aaKnown RBP21.84■■□□□ 1.09
SHKBP1-221ENST00000599833 TUFT1Q9NNX1 390 aa21.84■■□□□ 1.09
SHKBP1-221ENST00000599833 CLIC4Q9Y696 253 aa21.84■■□□□ 1.09
SHKBP1-221ENST00000599833 TRANK1O15050 2925 aa21.84■■□□□ 1.09
SHKBP1-221ENST00000599833 A0A087WWV3 80 aa21.83■■□□□ 1.09
SHKBP1-221ENST00000599833 PP2D1A8MPX8 630 aa21.83■■□□□ 1.09
SHKBP1-221ENST00000599833 RPA1P27694 616 aa21.83■■□□□ 1.09
SHKBP1-221ENST00000599833 GRIN1Q05586 938 aa21.83■■□□□ 1.09
SHKBP1-221ENST00000599833 SF3A1Q15459 793 aaKnown RBP21.83■■□□□ 1.09
SHKBP1-221ENST00000599833 EFCAB12Q6NXP0 572 aa21.83■■□□□ 1.09
SHKBP1-221ENST00000599833 CNKSR3Q6P9H4 555 aa21.83■■□□□ 1.09
SHKBP1-221ENST00000599833 DBF4BQ8NFT6 615 aa21.83■■□□□ 1.09
SHKBP1-221ENST00000599833 LRCH3Q96II8 777 aa21.83■■□□□ 1.09
SHKBP1-221ENST00000599833 CELF4Q9BZC1 486 aaKnown RBP21.83■■□□□ 1.09
SHKBP1-221ENST00000599833 ADAMTS10Q9H324 1103 aa21.83■■□□□ 1.09
SHKBP1-221ENST00000599833 TRPV2Q9Y5S1 764 aa21.83■■□□□ 1.09
SHKBP1-221ENST00000599833 DKC1O60832 514 aaKnown RBP eCLIP21.82■■□□□ 1.08
SHKBP1-221ENST00000599833 VTNP04004 478 aa21.82■■□□□ 1.08
SHKBP1-221ENST00000599833 GHRP10912 638 aa21.82■■□□□ 1.08
SHKBP1-221ENST00000599833 ARL6IP4Q66PJ3 421 aaKnown RBP21.82■■□□□ 1.08
SHKBP1-221ENST00000599833 POTEGQ6S5H5 508 aa21.82■■□□□ 1.08
SHKBP1-221ENST00000599833 XPNPEP1Q9NQW7 623 aa21.82■■□□□ 1.08
Retrieved 100 of 20,778 RNA–protein pairs in 19.7 ms