RNA–Protein interactions for RNA: ENST00000597325.1

SHKBP1-213, Transcript of SH3KBP1 binding protein 1, humanhuman

TSL 5

Gene SHKBP1, Length 366 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHKBP1-213ENST00000597325 WDR11Q9BZH6 1224 aa13.55□□□□□ -0.24
SHKBP1-213ENST00000597325 KCNMB3Q9NPA1 279 aa13.55□□□□□ -0.24
SHKBP1-213ENST00000597325 SRPRBQ9Y5M8 271 aaKnown RBP13.55□□□□□ -0.24
SHKBP1-213ENST00000597325 MRVI1Q9Y6F6 885 aa13.55□□□□□ -0.24
SHKBP1-213ENST00000597325 SIP14410 1827 aa13.55□□□□□ -0.24
SHKBP1-213ENST00000597325 MCM3APO60318 1980 aa13.54□□□□□ -0.24
SHKBP1-213ENST00000597325 COL4A6Q14031 1691 aa13.54□□□□□ -0.24
SHKBP1-213ENST00000597325 IPO5O00410 1097 aaKnown RBP13.54□□□□□ -0.24
SHKBP1-213ENST00000597325 MSH4O15457 936 aa13.54□□□□□ -0.24
SHKBP1-213ENST00000597325 MAFGO15525 162 aa13.54□□□□□ -0.24
SHKBP1-213ENST00000597325 GAS7O60861 476 aa13.54□□□□□ -0.24
SHKBP1-213ENST00000597325 TXLNAP40222 546 aa13.54□□□□□ -0.24
SHKBP1-213ENST00000597325 ID4P47928 161 aa13.54□□□□□ -0.24
SHKBP1-213ENST00000597325 UBE2HP62256 183 aa13.54□□□□□ -0.24
SHKBP1-213ENST00000597325 BEX3Q00994 111 aa13.54□□□□□ -0.24
SHKBP1-213ENST00000597325 COL19A1Q14993 1142 aa13.54□□□□□ -0.24
SHKBP1-213ENST00000597325 LRCH2Q5VUJ6 765 aa13.54□□□□□ -0.24
SHKBP1-213ENST00000597325 KCNV1Q6PIU1 500 aa13.54□□□□□ -0.24
SHKBP1-213ENST00000597325 CXCL17Q6UXB2 119 aa13.54□□□□□ -0.24
SHKBP1-213ENST00000597325 SEPT14Q6ZU15 432 aa13.54□□□□□ -0.24
SHKBP1-213ENST00000597325 MTMR9Q96QG7 549 aa13.54□□□□□ -0.24
SHKBP1-213ENST00000597325 VTA1Q9NP79 307 aa13.54□□□□□ -0.24
SHKBP1-213ENST00000597325 KCNH7Q9NS40 1196 aa13.54□□□□□ -0.24
SHKBP1-213ENST00000597325 CDKN2AIPQ9NXV6 580 aaPredicted RBP13.54□□□□□ -0.24
SHKBP1-213ENST00000597325 PKD2L1Q9P0L9 805 aa13.54□□□□□ -0.24
SHKBP1-213ENST00000597325 PCDHA7Q9UN72 937 aa13.54□□□□□ -0.24
SHKBP1-213ENST00000597325 DDX49Q9Y6V7 483 aaKnown RBP13.54□□□□□ -0.24
SHKBP1-213ENST00000597325 CABYRO75952 493 aa13.53□□□□□ -0.24
SHKBP1-213ENST00000597325 RGS20O76081 388 aa13.53□□□□□ -0.24
SHKBP1-213ENST00000597325 ARP10275 920 aa13.53□□□□□ -0.24
SHKBP1-213ENST00000597325 ACTN1P12814 892 aa13.53□□□□□ -0.24
SHKBP1-213ENST00000597325 LONP1P36776 959 aaKnown RBP13.53□□□□□ -0.24
SHKBP1-213ENST00000597325 TECP42680 631 aa13.53□□□□□ -0.24
SHKBP1-213ENST00000597325 FXR2P51116 673 aaKnown RBP eCLIP13.53□□□□□ -0.24
SHKBP1-213ENST00000597325 ERVK-21P61565 698 aa13.53□□□□□ -0.24
SHKBP1-213ENST00000597325 ADALQ6DHV7 355 aa13.53□□□□□ -0.24
SHKBP1-213ENST00000597325 EEPD1Q7L9B9 569 aa13.53□□□□□ -0.24
SHKBP1-213ENST00000597325 FBXO16Q8IX29 292 aaPredicted RBP13.53□□□□□ -0.24
SHKBP1-213ENST00000597325 ZNF579Q8NAF0 562 aaKnown RBP13.53□□□□□ -0.24
SHKBP1-213ENST00000597325 MRPS27Q92552 414 aaKnown RBP13.53□□□□□ -0.24
SHKBP1-213ENST00000597325 HAS1Q92839 578 aa13.53□□□□□ -0.24
SHKBP1-213ENST00000597325 SLC5A5Q92911 643 aa13.53□□□□□ -0.24
SHKBP1-213ENST00000597325 PBXIP1Q96AQ6 731 aa13.53□□□□□ -0.24
SHKBP1-213ENST00000597325 RIT2Q99578 217 aa13.53□□□□□ -0.24
SHKBP1-213ENST00000597325 SDF4Q9BRK5 362 aa13.53□□□□□ -0.24
SHKBP1-213ENST00000597325 TEKT3Q9BXF9 490 aa13.53□□□□□ -0.24
SHKBP1-213ENST00000597325 TTC12Q9H892 705 aaPredicted RBP13.53□□□□□ -0.24
SHKBP1-213ENST00000597325 AGO4Q9HCK5 861 aaKnown RBP13.53□□□□□ -0.24
SHKBP1-213ENST00000597325 FAM13BQ9NYF5 915 aa13.53□□□□□ -0.24
SHKBP1-213ENST00000597325 PCDHA12Q9UN75 941 aa13.53□□□□□ -0.24
SHKBP1-213ENST00000597325 NCOR2Q9Y618 2525 aa13.53□□□□□ -0.24
SHKBP1-213ENST00000597325 A0A1W2PQ27 194 aa13.52□□□□□ -0.25
SHKBP1-213ENST00000597325 A0A1W2PQ64 194 aa13.52□□□□□ -0.25
SHKBP1-213ENST00000597325 A0A1W2PQD8 194 aa13.52□□□□□ -0.25
SHKBP1-213ENST00000597325 TMEM221A6NGB7 291 aa13.52□□□□□ -0.25
SHKBP1-213ENST00000597325 SPATA31C2B4DYI2 1134 aa13.52□□□□□ -0.25
SHKBP1-213ENST00000597325 M0R296 226 aa13.52□□□□□ -0.25
SHKBP1-213ENST00000597325 ICAM3P32942 547 aa13.52□□□□□ -0.25
SHKBP1-213ENST00000597325 NFKBIBQ15653 356 aa13.52□□□□□ -0.25
SHKBP1-213ENST00000597325 CCDC73Q6ZRK6 1079 aa13.52□□□□□ -0.25
SHKBP1-213ENST00000597325 FSIP1Q8NA03 581 aa13.52□□□□□ -0.25
SHKBP1-213ENST00000597325 RASSF8Q8NHQ8 419 aa13.52□□□□□ -0.25
SHKBP1-213ENST00000597325 SCFD2Q8WU76 684 aa13.52□□□□□ -0.25
SHKBP1-213ENST00000597325 AK8Q96MA6 479 aa13.52□□□□□ -0.25
SHKBP1-213ENST00000597325 CLIC6Q96NY7 704 aa13.52□□□□□ -0.25
SHKBP1-213ENST00000597325 KATNBL1Q9H079 304 aa13.52□□□□□ -0.25
SHKBP1-213ENST00000597325 CSRNP2Q9H175 543 aa13.52□□□□□ -0.25
SHKBP1-213ENST00000597325 ABHD16BQ9H3Z7 469 aa13.52□□□□□ -0.25
SHKBP1-213ENST00000597325 TBC1D22BQ9NU19 505 aa13.52□□□□□ -0.25
SHKBP1-213ENST00000597325 LMBRD1Q9NUN5 540 aa13.52□□□□□ -0.25
SHKBP1-213ENST00000597325 CHD8Q9HCK8 2581 aa13.51□□□□□ -0.25
SHKBP1-213ENST00000597325 TPRP12270 2363 aaKnown RBP13.51□□□□□ -0.25
SHKBP1-213ENST00000597325 KIAA1217Q5T5P2 1943 aa13.51□□□□□ -0.25
SHKBP1-213ENST00000597325 TANC1Q9C0D5 1861 aa13.51□□□□□ -0.25
SHKBP1-213ENST00000597325 DDX39AO00148 427 aaKnown RBP13.51□□□□□ -0.25
SHKBP1-213ENST00000597325 MBD3O95983 291 aa13.51□□□□□ -0.25
SHKBP1-213ENST00000597325 AXDND1Q5T1B0 1012 aaPredicted RBP13.51□□□□□ -0.25
SHKBP1-213ENST00000597325 NCAPH2Q6IBW4 605 aa13.51□□□□□ -0.25
SHKBP1-213ENST00000597325 TRIM67Q6ZTA4 783 aa13.51□□□□□ -0.25
SHKBP1-213ENST00000597325 RNF135Q8IUD6 432 aa13.51□□□□□ -0.25
SHKBP1-213ENST00000597325 GIMAP8Q8ND71 665 aaPredicted RBP13.51□□□□□ -0.25
SHKBP1-213ENST00000597325 ERMNQ8TAM6 284 aa13.51□□□□□ -0.25
SHKBP1-213ENST00000597325 ATOH1Q92858 354 aaPredicted RBP13.51□□□□□ -0.25
SHKBP1-213ENST00000597325 GJA10Q969M2 543 aa13.51□□□□□ -0.25
SHKBP1-213ENST00000597325 IRF2BPLQ9H1B7 796 aa13.51□□□□□ -0.25
SHKBP1-213ENST00000597325 LRWD1Q9UFC0 647 aa13.51□□□□□ -0.25
SHKBP1-213ENST00000597325 FAM50BQ9Y247 325 aa13.51□□□□□ -0.25
SHKBP1-213ENST00000597325 STK24Q9Y6E0 443 aa13.51□□□□□ -0.25
SHKBP1-213ENST00000597325 NFASCO94856 1347 aa13.5□□□□□ -0.25
SHKBP1-213ENST00000597325 C11orf97A0A1B0GVM6 126 aaPredicted RBP13.5□□□□□ -0.25
SHKBP1-213ENST00000597325 MED19A0JLT2 244 aaPredicted RBP13.5□□□□□ -0.25
SHKBP1-213ENST00000597325 PRR23AA6NEV1 266 aa13.5□□□□□ -0.25
SHKBP1-213ENST00000597325 POTEMA6NI47 508 aa13.5□□□□□ -0.25
SHKBP1-213ENST00000597325 CHMP2AO43633 222 aa13.5□□□□□ -0.25
SHKBP1-213ENST00000597325 GADD45BO75293 160 aaPredicted RBP13.5□□□□□ -0.25
SHKBP1-213ENST00000597325 PSMD10O75832 226 aa13.5□□□□□ -0.25
SHKBP1-213ENST00000597325 TGFB3P10600 412 aa13.5□□□□□ -0.25
SHKBP1-213ENST00000597325 CYP2C9P11712 490 aa13.5□□□□□ -0.25
SHKBP1-213ENST00000597325 CMA1P23946 247 aa13.5□□□□□ -0.25
SHKBP1-213ENST00000597325 RFC2P35250 354 aa13.5□□□□□ -0.25
Retrieved 100 of 20,778 RNA–protein pairs in 18.5 ms