RNA–Protein interactions for RNA: ENST00000597215.5

VRK3-213, Transcript of vaccinia related kinase 3, humanhuman

TSL 2

Gene VRK3, Length 836 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VRK3-213ENST00000597215 CTAGE1Q96RT6 745 aa16.05■□□□□ 0.16
VRK3-213ENST00000597215 NT5C3AQ9H0P0 336 aa16.05■□□□□ 0.16
VRK3-213ENST00000597215 PRDM5Q9NQX1 630 aaPredicted RBP16.05■□□□□ 0.16
VRK3-213ENST00000597215 ANKEF1Q9NU02 776 aa16.05■□□□□ 0.16
VRK3-213ENST00000597215 PRKAG2Q9UGJ0 569 aa16.05■□□□□ 0.16
VRK3-213ENST00000597215 PPME1Q9Y570 386 aa16.05■□□□□ 0.16
VRK3-213ENST00000597215 LOXHD1Q8IVV2 1947 aa16.05■□□□□ 0.16
VRK3-213ENST00000597215 ARID2Q68CP9 1835 aa16.05■□□□□ 0.16
VRK3-213ENST00000597215 TMEM150BA6NC51 233 aa16.04■□□□□ 0.16
VRK3-213ENST00000597215 MAGEB2O15479 319 aa16.04■□□□□ 0.16
VRK3-213ENST00000597215 CUTAO60888 179 aa16.04■□□□□ 0.16
VRK3-213ENST00000597215 CYP2C9P11712 490 aa16.04■□□□□ 0.16
VRK3-213ENST00000597215 KLRC1P26715 233 aa16.04■□□□□ 0.16
VRK3-213ENST00000597215 TXLNAP40222 546 aa16.04■□□□□ 0.16
VRK3-213ENST00000597215 ZRSR1Q15695 479 aaKnown RBP16.04■□□□□ 0.16
VRK3-213ENST00000597215 HYIQ5T013 277 aa16.04■□□□□ 0.16
VRK3-213ENST00000597215 MARCH8Q5T0T0 291 aa16.04■□□□□ 0.16
VRK3-213ENST00000597215 PLA2G4FQ68DD2 849 aa16.04■□□□□ 0.16
VRK3-213ENST00000597215 TAF2Q6P1X5 1199 aa16.04■□□□□ 0.16
VRK3-213ENST00000597215 MTHFD1LQ6UB35 978 aa16.04■□□□□ 0.16
VRK3-213ENST00000597215 ZNF579Q8NAF0 562 aaKnown RBP16.04■□□□□ 0.16
VRK3-213ENST00000597215 RASSF8Q8NHQ8 419 aa16.04■□□□□ 0.16
VRK3-213ENST00000597215 CAGE1Q8TC20 777 aa16.04■□□□□ 0.16
VRK3-213ENST00000597215 CALML4Q96GE6 196 aa16.04■□□□□ 0.16
VRK3-213ENST00000597215 CHAMP1Q96JM3 812 aa16.04■□□□□ 0.16
VRK3-213ENST00000597215 CEP170P1Q96L14 293 aa16.04■□□□□ 0.16
VRK3-213ENST00000597215 CYP26B1Q9NR63 512 aa16.04■□□□□ 0.16
VRK3-213ENST00000597215 TBX21Q9UL17 535 aa16.04■□□□□ 0.16
VRK3-213ENST00000597215 KIAA1024Q9UPX6 916 aa16.04■□□□□ 0.16
VRK3-213ENST00000597215 PCDHA2Q9Y5H9 948 aa16.04■□□□□ 0.16
VRK3-213ENST00000597215 KIAA0355O15063 1070 aa16.03■□□□□ 0.16
VRK3-213ENST00000597215 C22orf31O95567 290 aa16.03■□□□□ 0.16
VRK3-213ENST00000597215 RPLP2P05387 115 aaKnown RBP16.03■□□□□ 0.16
VRK3-213ENST00000597215 NPEPPSP55786 919 aa16.03■□□□□ 0.16
VRK3-213ENST00000597215 TBC1D8BQ0IIM8 1120 aa16.03■□□□□ 0.16
VRK3-213ENST00000597215 BFSP2Q13515 415 aa16.03■□□□□ 0.16
VRK3-213ENST00000597215 ECM1Q16610 540 aa16.03■□□□□ 0.16
VRK3-213ENST00000597215 XKR9Q5GH70 373 aa16.03■□□□□ 0.16
VRK3-213ENST00000597215 SPECC1Q5M775 1068 aa16.03■□□□□ 0.16
VRK3-213ENST00000597215 EXOC8Q8IYI6 725 aa16.03■□□□□ 0.16
VRK3-213ENST00000597215 KCTD17Q8N5Z5 321 aa16.03■□□□□ 0.16
VRK3-213ENST00000597215 RETREG2Q8NC44 543 aa16.03■□□□□ 0.16
VRK3-213ENST00000597215 PIGOQ8TEQ8 1089 aa16.03■□□□□ 0.16
VRK3-213ENST00000597215 SYMPKQ92797 1274 aaKnown RBP16.03■□□□□ 0.16
VRK3-213ENST00000597215 JPH2Q9BR39 696 aaPredicted RBP16.03■□□□□ 0.16
VRK3-213ENST00000597215 CCSER1Q9C0I3 900 aa16.03■□□□□ 0.16
VRK3-213ENST00000597215 HIPK3Q9H422 1215 aa16.03■□□□□ 0.16
VRK3-213ENST00000597215 DDX19AQ9NUU7 478 aaKnown RBP16.03■□□□□ 0.16
VRK3-213ENST00000597215 DBR1Q9UK59 544 aaKnown RBP16.03■□□□□ 0.16
VRK3-213ENST00000597215 DNM3Q9UQ16 869 aa16.03■□□□□ 0.16
VRK3-213ENST00000597215 EVPLQ92817 2033 aa16.02■□□□□ 0.16
VRK3-213ENST00000597215 SMIM35A0A1B0GVV1 85 aa16.02■□□□□ 0.16
VRK3-213ENST00000597215 TRIM43BA6NCK2 446 aa16.02■□□□□ 0.16
VRK3-213ENST00000597215 PITPNM1O00562 1244 aa16.02■□□□□ 0.16
VRK3-213ENST00000597215 ZBTB39O15060 712 aa16.02■□□□□ 0.16
VRK3-213ENST00000597215 RFC5P40937 340 aa16.02■□□□□ 0.16
VRK3-213ENST00000597215 RARRES1P49788 294 aa16.02■□□□□ 0.16
VRK3-213ENST00000597215 RBL2Q08999 1139 aa16.02■□□□□ 0.16
VRK3-213ENST00000597215 GRB10Q13322 594 aa16.02■□□□□ 0.16
VRK3-213ENST00000597215 TMEM119Q4V9L6 283 aa16.02■□□□□ 0.16
VRK3-213ENST00000597215 RUFY4Q6ZNE9 571 aa16.02■□□□□ 0.16
VRK3-213ENST00000597215 SH3RF1Q7Z6J0 888 aa16.02■□□□□ 0.16
VRK3-213ENST00000597215 RSPH3Q86UC2 560 aa16.02■□□□□ 0.16
VRK3-213ENST00000597215 DHX38Q92620 1227 aaKnown RBP16.02■□□□□ 0.16
VRK3-213ENST00000597215 TRIM43Q96BQ3 446 aaPredicted RBP16.02■□□□□ 0.16
VRK3-213ENST00000597215 EPSTI1Q96J88 318 aa16.02■□□□□ 0.16
VRK3-213ENST00000597215 PNMA5Q96PV4 448 aa16.02■□□□□ 0.16
VRK3-213ENST00000597215 CEP89Q96ST8 783 aa16.02■□□□□ 0.16
VRK3-213ENST00000597215 SH2D3AQ9BRG2 576 aa16.02■□□□□ 0.16
VRK3-213ENST00000597215 NOC4LQ9BVI4 516 aaKnown RBP16.02■□□□□ 0.16
VRK3-213ENST00000597215 CCDC39Q9UFE4 941 aa16.02■□□□□ 0.16
VRK3-213ENST00000597215 PCDHA7Q9UN72 937 aa16.02■□□□□ 0.16
VRK3-213ENST00000597215 A0A087WWV3 80 aa16.01■□□□□ 0.15
VRK3-213ENST00000597215 ARHGEF35A5YM69 484 aa16.01■□□□□ 0.15
VRK3-213ENST00000597215 CAND2O75155 1236 aa16.01■□□□□ 0.15
VRK3-213ENST00000597215 RAG1P15918 1043 aa16.01■□□□□ 0.15
VRK3-213ENST00000597215 TMOD1P28289 359 aa16.01■□□□□ 0.15
VRK3-213ENST00000597215 POLGP54098 1239 aaPredicted RBP16.01■□□□□ 0.15
VRK3-213ENST00000597215 KARSQ15046 597 aaKnown RBP16.01■□□□□ 0.15
VRK3-213ENST00000597215 TRIM71Q2Q1W2 868 aaKnown RBP16.01■□□□□ 0.15
VRK3-213ENST00000597215 AXDND1Q5T1B0 1012 aaPredicted RBP16.01■□□□□ 0.15
VRK3-213ENST00000597215 USP49Q70CQ1 688 aa16.01■□□□□ 0.15
VRK3-213ENST00000597215 RPAINQ86UA6 219 aa16.01■□□□□ 0.15
VRK3-213ENST00000597215 METTL13Q8N6R0 699 aa16.01■□□□□ 0.15
VRK3-213ENST00000597215 SLC7A3Q8WY07 619 aa16.01■□□□□ 0.15
VRK3-213ENST00000597215 WNT8BQ93098 351 aa16.01■□□□□ 0.15
VRK3-213ENST00000597215 ZBTB10Q96DT7 871 aa16.01■□□□□ 0.15
VRK3-213ENST00000597215 PPP1R12CQ9BZL4 782 aa16.01■□□□□ 0.15
VRK3-213ENST00000597215 ZMYND8Q9ULU4 1186 aaPredicted RBP16.01■□□□□ 0.15
VRK3-213ENST00000597215 TANC1Q9C0D5 1861 aa16■□□□□ 0.15
VRK3-213ENST00000597215 GAS2O43903 313 aaKnown RBP16■□□□□ 0.15
VRK3-213ENST00000597215 MAFO75444 373 aaPredicted RBP16■□□□□ 0.15
VRK3-213ENST00000597215 EYA4O95677 639 aa16■□□□□ 0.15
VRK3-213ENST00000597215 TIMP1P01033 207 aa16■□□□□ 0.15
VRK3-213ENST00000597215 CKBP12277 381 aa16■□□□□ 0.15
VRK3-213ENST00000597215 SYN1P17600 705 aa16■□□□□ 0.15
VRK3-213ENST00000597215 PLCG1P19174 1290 aa16■□□□□ 0.15
VRK3-213ENST00000597215 THPOP40225 353 aa16■□□□□ 0.15
VRK3-213ENST00000597215 EFCAB12Q6NXP0 572 aa16■□□□□ 0.15
VRK3-213ENST00000597215 DNAJB3Q8WWF6 145 aa16■□□□□ 0.15
Retrieved 100 of 20,778 RNA–protein pairs in 18 ms