RNA–Protein interactions for RNA: ENST00000590630.5

LIG3-213, Transcript of DNA ligase 3, humanhuman

TSL 5

Gene LIG3, Length 904 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG3-213ENST00000590630 CHRNA1P02708 482 aa13.34□□□□□ -0.27
LIG3-213ENST00000590630 HSP90AA1P07900 732 aaKnown RBP13.34□□□□□ -0.27
LIG3-213ENST00000590630 SYT1P21579 422 aa13.34□□□□□ -0.27
LIG3-213ENST00000590630 MRPS6P82932 125 aaKnown RBP13.34□□□□□ -0.27
LIG3-213ENST00000590630 TBC1D8BQ0IIM8 1120 aa13.34□□□□□ -0.27
LIG3-213ENST00000590630 PTGDRQ13258 359 aa13.34□□□□□ -0.27
LIG3-213ENST00000590630 NBR1Q14596 966 aa13.34□□□□□ -0.27
LIG3-213ENST00000590630 TARBP2Q15633 366 aaKnown RBP13.34□□□□□ -0.27
LIG3-213ENST00000590630 TMEM266Q2M3C6 531 aa13.34□□□□□ -0.27
LIG3-213ENST00000590630 GPR153Q6NV75 609 aa13.34□□□□□ -0.27
LIG3-213ENST00000590630 CNKSR3Q6P9H4 555 aa13.34□□□□□ -0.27
LIG3-213ENST00000590630 C4orf19Q8IY42 314 aa13.34□□□□□ -0.27
LIG3-213ENST00000590630 C4orf32Q8N8J7 132 aa13.34□□□□□ -0.27
LIG3-213ENST00000590630 HSD17B14Q9BPX1 270 aa13.34□□□□□ -0.27
LIG3-213ENST00000590630 EIF2AK1Q9BQI3 630 aaKnown RBP13.34□□□□□ -0.27
LIG3-213ENST00000590630 ZSWIM4Q9H7M6 989 aa13.34□□□□□ -0.27
LIG3-213ENST00000590630 EIF4ENIF1Q9NRA8 985 aaKnown RBP13.34□□□□□ -0.27
LIG3-213ENST00000590630 CDH23Q9H251 3354 aa13.34□□□□□ -0.27
LIG3-213ENST00000590630 PTPRSQ13332 1948 aa13.33□□□□□ -0.28
LIG3-213ENST00000590630 POTEMA6NI47 508 aa13.33□□□□□ -0.28
LIG3-213ENST00000590630 DDX11L8A8MPP1 907 aa13.33□□□□□ -0.28
LIG3-213ENST00000590630 SOX1O00570 391 aaPredicted RBP13.33□□□□□ -0.28
LIG3-213ENST00000590630 EFCAB14O75071 495 aa13.33□□□□□ -0.28
LIG3-213ENST00000590630 TMOD1P28289 359 aa13.33□□□□□ -0.28
LIG3-213ENST00000590630 PRPHP41219 470 aa13.33□□□□□ -0.28
LIG3-213ENST00000590630 TECP42680 631 aa13.33□□□□□ -0.28
LIG3-213ENST00000590630 FXR2P51116 673 aaKnown RBP eCLIP13.33□□□□□ -0.282e-6■□□□□ 9.9
LIG3-213ENST00000590630 SMAD3P84022 425 aaKnown RBP13.33□□□□□ -0.28
LIG3-213ENST00000590630 CYP4A11Q02928 519 aa13.33□□□□□ -0.28
LIG3-213ENST00000590630 MGAT3Q09327 533 aa13.33□□□□□ -0.28
LIG3-213ENST00000590630 PLEKHG4Q58EX7 1191 aa13.33□□□□□ -0.28
LIG3-213ENST00000590630 ANO5Q75V66 913 aa13.33□□□□□ -0.28
LIG3-213ENST00000590630 TPH2Q8IWU9 490 aa13.33□□□□□ -0.28
LIG3-213ENST00000590630 KIAA0319LQ8IZA0 1049 aa13.33□□□□□ -0.28
LIG3-213ENST00000590630 ZNF710Q8N1W2 664 aa13.33□□□□□ -0.28
LIG3-213ENST00000590630 METTL13Q8N6R0 699 aa13.33□□□□□ -0.28
LIG3-213ENST00000590630 ERMNQ8TAM6 284 aa13.33□□□□□ -0.28
LIG3-213ENST00000590630 DYDC2Q96IM9 177 aa13.33□□□□□ -0.28
LIG3-213ENST00000590630 RAB34Q9BZG1 259 aa13.33□□□□□ -0.28
LIG3-213ENST00000590630 RGL1Q9NZL6 768 aa13.33□□□□□ -0.28
LIG3-213ENST00000590630 CXXC1Q9P0U4 656 aaPredicted RBP13.33□□□□□ -0.28
LIG3-213ENST00000590630 WRAP73Q9P2S5 460 aaPredicted RBP13.33□□□□□ -0.28
LIG3-213ENST00000590630 PPME1Q9Y570 386 aa13.33□□□□□ -0.28
LIG3-213ENST00000590630 CDY2AQ9Y6F7 541 aa13.33□□□□□ -0.28
LIG3-213ENST00000590630 SLC4A7Q9Y6M7 1214 aa13.33□□□□□ -0.28
LIG3-213ENST00000590630 SQORQ9Y6N5 450 aa13.33□□□□□ -0.28
LIG3-213ENST00000590630 CHD7Q9P2D1 2997 aa13.33□□□□□ -0.28
LIG3-213ENST00000590630 KDM3AQ9Y4C1 1321 aa13.33□□□□□ -0.28
LIG3-213ENST00000590630 MYH15Q9Y2K3 1946 aa13.33□□□□□ -0.28
LIG3-213ENST00000590630 HSFX4A0A1B0GTS1 333 aaPredicted RBP13.32□□□□□ -0.28
LIG3-213ENST00000590630 ABHD14A-ACY1A0A1B0GW23 586 aa13.32□□□□□ -0.28
LIG3-213ENST00000590630 HSFX3A0A1B0GWH4 333 aaPredicted RBP13.32□□□□□ -0.28
LIG3-213ENST00000590630 ZBBXA8MT70 800 aa13.32□□□□□ -0.28
LIG3-213ENST00000590630 SLITRK3O94933 977 aa13.32□□□□□ -0.28
LIG3-213ENST00000590630 LYPLA2O95372 231 aa13.32□□□□□ -0.28
LIG3-213ENST00000590630 PDIA4P13667 645 aaKnown RBP13.32□□□□□ -0.28
LIG3-213ENST00000590630 YWHABP31946 246 aaKnown RBP13.32□□□□□ -0.28
LIG3-213ENST00000590630 IKBKEQ14164 716 aa13.32□□□□□ -0.28
LIG3-213ENST00000590630 CTTNQ14247 550 aaKnown RBP13.32□□□□□ -0.28
LIG3-213ENST00000590630 PDIA5Q14554 519 aa13.32□□□□□ -0.28
LIG3-213ENST00000590630 MTERF2Q49AM1 385 aa13.32□□□□□ -0.28
LIG3-213ENST00000590630 EFCAB12Q6NXP0 572 aa13.32□□□□□ -0.28
LIG3-213ENST00000590630 OTUD6AQ7L8S5 288 aa13.32□□□□□ -0.28
LIG3-213ENST00000590630 EXOC8Q8IYI6 725 aa13.32□□□□□ -0.28
LIG3-213ENST00000590630 LINC01465Q8N7H1 131 aa13.32□□□□□ -0.28
LIG3-213ENST00000590630 USP38Q8NB14 1042 aa13.32□□□□□ -0.28
LIG3-213ENST00000590630 SEPT8Q92599 483 aa13.32□□□□□ -0.28
LIG3-213ENST00000590630 APBB2Q92870 758 aa13.32□□□□□ -0.28
LIG3-213ENST00000590630 CEP89Q96ST8 783 aa13.32□□□□□ -0.28
LIG3-213ENST00000590630 MAP7D2Q96T17 732 aa13.32□□□□□ -0.28
LIG3-213ENST00000590630 JPH2Q9BR39 696 aaPredicted RBP13.32□□□□□ -0.28
LIG3-213ENST00000590630 IFIH1Q9BYX4 1025 aaKnown RBP13.32□□□□□ -0.28
LIG3-213ENST00000590630 CELF4Q9BZC1 486 aaKnown RBP13.32□□□□□ -0.28
LIG3-213ENST00000590630 CYP26B1Q9NR63 512 aa13.32□□□□□ -0.28
LIG3-213ENST00000590630 FOXD4L1Q9NU39 408 aa13.32□□□□□ -0.28
LIG3-213ENST00000590630 TRPV2Q9Y5S1 764 aa13.32□□□□□ -0.28
LIG3-213ENST00000590630 TMEM150BA6NC51 233 aa13.31□□□□□ -0.28
LIG3-213ENST00000590630 STX6O43752 255 aa13.31□□□□□ -0.28
LIG3-213ENST00000590630 GHRP10912 638 aa13.31□□□□□ -0.28
LIG3-213ENST00000590630 KCNJ6P48051 423 aa13.31□□□□□ -0.28
LIG3-213ENST00000590630 CLCN3P51790 818 aa13.31□□□□□ -0.28
LIG3-213ENST00000590630 ATP2C1P98194 919 aaPredicted RBP13.31□□□□□ -0.28
LIG3-213ENST00000590630 TMEM62Q0P6H9 643 aa13.31□□□□□ -0.28
LIG3-213ENST00000590630 LPIN1Q14693 890 aa13.31□□□□□ -0.28
LIG3-213ENST00000590630 FBXO47Q5MNV8 452 aa13.31□□□□□ -0.28
LIG3-213ENST00000590630 HAUS3Q68CZ6 603 aa13.31□□□□□ -0.28
LIG3-213ENST00000590630 PLA2G4FQ68DD2 849 aa13.31□□□□□ -0.28
LIG3-213ENST00000590630 TSHZ1Q6ZSZ6 1077 aa13.31□□□□□ -0.28
LIG3-213ENST00000590630 FERMT3Q86UX7 667 aa13.31□□□□□ -0.28
LIG3-213ENST00000590630 DBF4BQ8NFT6 615 aa13.31□□□□□ -0.28
LIG3-213ENST00000590630 PHOSPHO2Q8TCD6 241 aa13.31□□□□□ -0.28
LIG3-213ENST00000590630 SLC7A3Q8WY07 619 aa13.31□□□□□ -0.28
LIG3-213ENST00000590630 LRCH3Q96II8 777 aa13.31□□□□□ -0.28
LIG3-213ENST00000590630 SLC9A7Q96T83 725 aa13.31□□□□□ -0.28
LIG3-213ENST00000590630 POLR3CQ9BUI4 534 aaPredicted RBP13.31□□□□□ -0.28
LIG3-213ENST00000590630 SUGCTQ9HAC7 445 aa13.31□□□□□ -0.28
LIG3-213ENST00000590630 TUFT1Q9NNX1 390 aa13.31□□□□□ -0.28
LIG3-213ENST00000590630 STK24Q9Y6E0 443 aa13.31□□□□□ -0.28
LIG3-213ENST00000590630 TRANK1O15050 2925 aa13.31□□□□□ -0.28
LIG3-213ENST00000590630 IGKV6-21A0A0C4DH24 114 aa13.3□□□□□ -0.28
Retrieved 100 of 20,778 RNA–protein pairs in 18.4 ms