RNA–Protein interactions for RNA: ENST00000590181.5

LIG3-212, Transcript of DNA ligase 3, humanhuman

TSL 1 (best)

Gene LIG3, Length 1,156 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG3-212ENST00000590181 TRPC6Q9Y210 931 aa11.87□□□□□ -0.51
LIG3-212ENST00000590181 PPME1Q9Y570 386 aa11.87□□□□□ -0.51
LIG3-212ENST00000590181 WDR81Q562E7 1941 aa11.86□□□□□ -0.51
LIG3-212ENST00000590181 PPAN-P2RY11A0A0B4J1V8 794 aaPredicted RBP11.86□□□□□ -0.51
LIG3-212ENST00000590181 CCDC194A0A1B0GVG4 234 aa11.86□□□□□ -0.51
LIG3-212ENST00000590181 RBAK-RBAKDNI3L0D1 243 aa11.86□□□□□ -0.51
LIG3-212ENST00000590181 M0R2N6 131 aa11.86□□□□□ -0.51
LIG3-212ENST00000590181 SORBS3O60504 671 aa11.86□□□□□ -0.51
LIG3-212ENST00000590181 GAS7O60861 476 aa11.86□□□□□ -0.51
LIG3-212ENST00000590181 TMOD1P28289 359 aa11.86□□□□□ -0.51
LIG3-212ENST00000590181 MRE11P49959 708 aa11.86□□□□□ -0.51
LIG3-212ENST00000590181 NEK4P51957 841 aa11.86□□□□□ -0.51
LIG3-212ENST00000590181 ZNF200P98182 395 aaPredicted RBP11.86□□□□□ -0.51
LIG3-212ENST00000590181 SCRN1Q12765 414 aa11.86□□□□□ -0.51
LIG3-212ENST00000590181 PLCB4Q15147 1175 aa11.86□□□□□ -0.51
LIG3-212ENST00000590181 TIGD5Q53EQ6 642 aa11.86□□□□□ -0.51
LIG3-212ENST00000590181 MARCH8Q5T0T0 291 aa11.86□□□□□ -0.51
LIG3-212ENST00000590181 PDXDC2PQ6P474 469 aa11.86□□□□□ -0.51
LIG3-212ENST00000590181 TRIM50Q86XT4 487 aa11.86□□□□□ -0.51
LIG3-212ENST00000590181 GADD45GIP1Q8TAE8 222 aaPredicted RBP11.86□□□□□ -0.51
LIG3-212ENST00000590181 TBCKQ8TEA7 893 aa11.86□□□□□ -0.51
LIG3-212ENST00000590181 SLC5A5Q92911 643 aa11.86□□□□□ -0.51
LIG3-212ENST00000590181 MBOAT7Q96N66 472 aa11.86□□□□□ -0.51
LIG3-212ENST00000590181 LLPHQ9BRT6 129 aaKnown RBP11.86□□□□□ -0.51
LIG3-212ENST00000590181 DAXXQ9UER7 740 aaPredicted RBP11.86□□□□□ -0.51
LIG3-212ENST00000590181 TPCN1Q9ULQ1 816 aa11.86□□□□□ -0.51
LIG3-212ENST00000590181 LIMCH1Q9UPQ0 1083 aa11.86□□□□□ -0.51
LIG3-212ENST00000590181 H3BQ06 376 aaPredicted RBP11.85□□□□□ -0.51
LIG3-212ENST00000590181 ALADP13716 330 aa11.85□□□□□ -0.51
LIG3-212ENST00000590181 AK2P54819 239 aa11.85□□□□□ -0.51
LIG3-212ENST00000590181 MRPS6P82932 125 aaKnown RBP11.85□□□□□ -0.51
LIG3-212ENST00000590181 STK3Q13188 491 aa11.85□□□□□ -0.51
LIG3-212ENST00000590181 TRIM29Q14134 588 aa11.85□□□□□ -0.51
LIG3-212ENST00000590181 SWSAP1Q6NVH7 229 aa11.85□□□□□ -0.51
LIG3-212ENST00000590181 MTHFD1LQ6UB35 978 aa11.85□□□□□ -0.51
LIG3-212ENST00000590181 TSHZ1Q6ZSZ6 1077 aa11.85□□□□□ -0.51
LIG3-212ENST00000590181 DBF4BQ8NFT6 615 aa11.85□□□□□ -0.51
LIG3-212ENST00000590181 WNT8BQ93098 351 aa11.85□□□□□ -0.51
LIG3-212ENST00000590181 GTF3C6Q969F1 213 aa11.85□□□□□ -0.51
LIG3-212ENST00000590181 TOP1MTQ969P6 601 aa11.85□□□□□ -0.51
LIG3-212ENST00000590181 PGBD1Q96JS3 809 aa11.85□□□□□ -0.51
LIG3-212ENST00000590181 PCYT2Q99447 389 aa11.85□□□□□ -0.51
LIG3-212ENST00000590181 JPH2Q9BR39 696 aaPredicted RBP11.85□□□□□ -0.51
LIG3-212ENST00000590181 TEKT3Q9BXF9 490 aa11.85□□□□□ -0.51
LIG3-212ENST00000590181 IFIH1Q9BYX4 1025 aaKnown RBP11.85□□□□□ -0.51
LIG3-212ENST00000590181 UPF2Q9HAU5 1272 aaKnown RBP11.85□□□□□ -0.51
LIG3-212ENST00000590181 SH2B1Q9NRF2 756 aaPredicted RBP11.85□□□□□ -0.51
LIG3-212ENST00000590181 ORC3Q9UBD5 711 aaPredicted RBP11.85□□□□□ -0.51
LIG3-212ENST00000590181 RWDD3Q9Y3V2 267 aa11.85□□□□□ -0.51
LIG3-212ENST00000590181 SAMM50Q9Y512 469 aa11.85□□□□□ -0.51
LIG3-212ENST00000590181 KMT2EQ8IZD2 1858 aa11.85□□□□□ -0.51
LIG3-212ENST00000590181 EVPLQ92817 2033 aa11.84□□□□□ -0.51
LIG3-212ENST00000590181 GRXCR2A6NFK2 248 aa11.84□□□□□ -0.51
LIG3-212ENST00000590181 DCXO43602 365 aa11.84□□□□□ -0.51
LIG3-212ENST00000590181 BAG4O95429 457 aaKnown RBP11.84□□□□□ -0.51
LIG3-212ENST00000590181 CCNE2O96020 404 aa11.84□□□□□ -0.51
LIG3-212ENST00000590181 CHRNA1P02708 482 aa11.84□□□□□ -0.51
LIG3-212ENST00000590181 NHLH1Q02575 133 aa11.84□□□□□ -0.51
LIG3-212ENST00000590181 MKRN4PQ13434 485 aaPredicted RBP11.84□□□□□ -0.51
LIG3-212ENST00000590181 HIC1Q14526 733 aa11.84□□□□□ -0.51
LIG3-212ENST00000590181 MBTPS1Q14703 1052 aa11.84□□□□□ -0.51
LIG3-212ENST00000590181 PTPROQ16827 1216 aa11.84□□□□□ -0.51
LIG3-212ENST00000590181 PUS10Q3MIT2 529 aaKnown RBP11.84□□□□□ -0.51
LIG3-212ENST00000590181 LRCH2Q5VUJ6 765 aa11.84□□□□□ -0.51
LIG3-212ENST00000590181 NEK8Q86SG6 692 aa11.84□□□□□ -0.51
LIG3-212ENST00000590181 SLFN12Q8IYM2 578 aa11.84□□□□□ -0.51
LIG3-212ENST00000590181 MYOCDQ8IZQ8 938 aa11.84□□□□□ -0.51
LIG3-212ENST00000590181 RSPH1Q8WYR4 309 aa11.84□□□□□ -0.51
LIG3-212ENST00000590181 LENG9Q96B70 501 aa11.84□□□□□ -0.51
LIG3-212ENST00000590181 MRPL38Q96DV4 380 aaKnown RBP11.84□□□□□ -0.51
LIG3-212ENST00000590181 CELF4Q9BZC1 486 aaKnown RBP11.84□□□□□ -0.51
LIG3-212ENST00000590181 DISC1Q9NRI5 854 aa11.84□□□□□ -0.51
LIG3-212ENST00000590181 PKD2L1Q9P0L9 805 aa11.84□□□□□ -0.51
LIG3-212ENST00000590181 TTC3P53804 2025 aa11.84□□□□□ -0.51
LIG3-212ENST00000590181 MSH4O15457 936 aa11.83□□□□□ -0.52
LIG3-212ENST00000590181 PSMD10O75832 226 aa11.83□□□□□ -0.52
LIG3-212ENST00000590181 KLRC1P26715 233 aa11.83□□□□□ -0.52
LIG3-212ENST00000590181 MARK3P27448 753 aa11.83□□□□□ -0.52
LIG3-212ENST00000590181 DNM2P50570 870 aa11.83□□□□□ -0.52
LIG3-212ENST00000590181 HMGN5P82970 282 aaKnown RBP11.83□□□□□ -0.52
LIG3-212ENST00000590181 HTRA4P83105 476 aaPredicted RBP11.83□□□□□ -0.52
LIG3-212ENST00000590181 MGAT3Q09327 533 aa11.83□□□□□ -0.52
LIG3-212ENST00000590181 ORC2Q13416 577 aaPredicted RBP11.83□□□□□ -0.52
LIG3-212ENST00000590181 SAFBQ15424 915 aaKnown RBP eCLIP11.83□□□□□ -0.52
LIG3-212ENST00000590181 LIN28BQ6ZN17 250 aaKnown RBP eCLIP11.83□□□□□ -0.52
LIG3-212ENST00000590181 EP400NLQ6ZTU2 488 aa11.83□□□□□ -0.52
LIG3-212ENST00000590181 CKAP2LQ8IYA6 745 aa11.83□□□□□ -0.52
LIG3-212ENST00000590181 NEK9Q8TD19 979 aa11.83□□□□□ -0.52
LIG3-212ENST00000590181 SP7Q8TDD2 431 aaPredicted RBP11.83□□□□□ -0.52
LIG3-212ENST00000590181 DNAJB3Q8WWF6 145 aa11.83□□□□□ -0.52
LIG3-212ENST00000590181 DDX25Q9UHL0 483 aaKnown RBP11.83□□□□□ -0.52
LIG3-212ENST00000590181 KIF3AQ9Y496 699 aa11.83□□□□□ -0.52
LIG3-212ENST00000590181 TRPV2Q9Y5S1 764 aa11.83□□□□□ -0.52
LIG3-212ENST00000590181 IGSF9BQ9UPX0 1349 aa11.83□□□□□ -0.52
LIG3-212ENST00000590181 GPR182O15218 404 aa11.82□□□□□ -0.52
LIG3-212ENST00000590181 STAG3L1P0CL83 205 aa11.82□□□□□ -0.52
LIG3-212ENST00000590181 KRT2P35908 639 aa11.82□□□□□ -0.52
LIG3-212ENST00000590181 RBM25P49756 843 aaKnown RBP11.82□□□□□ -0.52
LIG3-212ENST00000590181 CRYBB1P53674 252 aaPredicted RBP11.82□□□□□ -0.52
LIG3-212ENST00000590181 ZP2Q05996 745 aa11.82□□□□□ -0.52
Retrieved 100 of 20,778 RNA–protein pairs in 14.8 ms