RNA–Protein interactions for RNA: ENST00000589604.5

VPS4B-204, Transcript of vacuolar protein sorting 4 homolog B, humanhuman

TSL 1 (best)

Gene VPS4B, Length 1,672 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS4B-204ENST00000589604 RASSF8Q8NHQ8 419 aa11.66□□□□□ -0.54
VPS4B-204ENST00000589604 FAM212AQ96EL1 285 aa11.66□□□□□ -0.54
VPS4B-204ENST00000589604 DYDC2Q96IM9 177 aa11.66□□□□□ -0.54
VPS4B-204ENST00000589604 SPATA33Q96N06 139 aa11.66□□□□□ -0.54
VPS4B-204ENST00000589604 MED15Q96RN5 788 aa11.66□□□□□ -0.54
VPS4B-204ENST00000589604 GPR20Q99678 358 aa11.66□□□□□ -0.54
VPS4B-204ENST00000589604 NT5C3AQ9H0P0 336 aa11.66□□□□□ -0.54
VPS4B-204ENST00000589604 AP5M1Q9H0R1 490 aa11.66□□□□□ -0.54
VPS4B-204ENST00000589604 TBC1D22BQ9NU19 505 aa11.66□□□□□ -0.54
VPS4B-204ENST00000589604 NFASCO94856 1347 aa11.66□□□□□ -0.54
VPS4B-204ENST00000589604 MYH11P35749 1972 aa11.66□□□□□ -0.54
VPS4B-204ENST00000589604 AP5Z1O43299 807 aa11.65□□□□□ -0.54
VPS4B-204ENST00000589604 CHMP2AO43633 222 aa11.65□□□□□ -0.54
VPS4B-204ENST00000589604 RPN1P04843 607 aaKnown RBP11.65□□□□□ -0.54
VPS4B-204ENST00000589604 ASGR1P07306 291 aa11.65□□□□□ -0.54
VPS4B-204ENST00000589604 COL6A1P12109 1028 aa11.65□□□□□ -0.54
VPS4B-204ENST00000589604 HOXD8P13378 290 aaPredicted RBP11.65□□□□□ -0.54
VPS4B-204ENST00000589604 CD44P16070 742 aaKnown RBP11.65□□□□□ -0.54
VPS4B-204ENST00000589604 SLC12A3P55017 1021 aa11.65□□□□□ -0.54
VPS4B-204ENST00000589604 LAMC2Q13753 1193 aa11.65□□□□□ -0.54
VPS4B-204ENST00000589604 NEDD9Q14511 834 aa11.65□□□□□ -0.54
VPS4B-204ENST00000589604 HAUS3Q68CZ6 603 aa11.65□□□□□ -0.54
VPS4B-204ENST00000589604 CXCL17Q6UXB2 119 aa11.65□□□□□ -0.54
VPS4B-204ENST00000589604 SV2BQ7L1I2 683 aa11.65□□□□□ -0.54
VPS4B-204ENST00000589604 PPTC7Q8NI37 304 aa11.65□□□□□ -0.54
VPS4B-204ENST00000589604 ERMNQ8TAM6 284 aa11.65□□□□□ -0.54
VPS4B-204ENST00000589604 KAT2BQ92831 832 aa11.65□□□□□ -0.54
VPS4B-204ENST00000589604 DNAJC19Q96DA6 116 aa11.65□□□□□ -0.54
VPS4B-204ENST00000589604 CCDC34Q96HJ3 373 aa11.65□□□□□ -0.54
VPS4B-204ENST00000589604 PAWRQ96IZ0 340 aaKnown RBP11.65□□□□□ -0.54
VPS4B-204ENST00000589604 CDK5RAP3Q96JB5 506 aa11.65□□□□□ -0.54
VPS4B-204ENST00000589604 CDHR1Q96JP9 859 aa11.65□□□□□ -0.54
VPS4B-204ENST00000589604 PCYT2Q99447 389 aa11.65□□□□□ -0.54
VPS4B-204ENST00000589604 BPIFA3Q9BQP9 254 aa11.65□□□□□ -0.54
VPS4B-204ENST00000589604 MLXIPQ9HAP2 919 aa11.65□□□□□ -0.54
VPS4B-204ENST00000589604 TUFT1Q9NNX1 390 aa11.65□□□□□ -0.54
VPS4B-204ENST00000589604 PPP1R3GB7ZBB8 358 aa11.65□□□□□ -0.55
VPS4B-204ENST00000589604 DNM1LO00429 736 aa11.65□□□□□ -0.55
VPS4B-204ENST00000589604 GRIN2DO15399 1336 aa11.65□□□□□ -0.55
VPS4B-204ENST00000589604 PLA2G4BP0C869 781 aa11.65□□□□□ -0.55
VPS4B-204ENST00000589604 ZNF286BP0CG31 522 aa11.65□□□□□ -0.55
VPS4B-204ENST00000589604 MUTP22033 750 aa11.65□□□□□ -0.55
VPS4B-204ENST00000589604 ACLYP53396 1101 aa11.65□□□□□ -0.55
VPS4B-204ENST00000589604 ACTR2P61160 394 aa11.65□□□□□ -0.55
VPS4B-204ENST00000589604 PURAQ00577 322 aaKnown RBP11.65□□□□□ -0.55
VPS4B-204ENST00000589604 CYP4A11Q02928 519 aa11.65□□□□□ -0.55
VPS4B-204ENST00000589604 CTTNQ14247 550 aaKnown RBP11.65□□□□□ -0.55
VPS4B-204ENST00000589604 KCNB1Q14721 858 aa11.65□□□□□ -0.55
VPS4B-204ENST00000589604 NCAPHQ15003 741 aa11.65□□□□□ -0.55
VPS4B-204ENST00000589604 ARSHQ5FYA8 562 aa11.65□□□□□ -0.55
VPS4B-204ENST00000589604 RNF180Q86T96 592 aa11.65□□□□□ -0.55
VPS4B-204ENST00000589604 TRIM50Q86XT4 487 aa11.65□□□□□ -0.55
VPS4B-204ENST00000589604 TRAIPQ9BWF2 469 aa11.65□□□□□ -0.55
VPS4B-204ENST00000589604 JPH1Q9HDC5 661 aaPredicted RBP11.65□□□□□ -0.55
VPS4B-204ENST00000589604 SLC9A2Q9UBY0 812 aa11.65□□□□□ -0.55
VPS4B-204ENST00000589604 PHF24Q9UPV7 400 aa11.65□□□□□ -0.55
VPS4B-204ENST00000589604 ARID2Q68CP9 1835 aa11.64□□□□□ -0.55
VPS4B-204ENST00000589604 A0A1W2PQ45 241 aaPredicted RBP11.64□□□□□ -0.55
VPS4B-204ENST00000589604 A0A1W2PQY0 241 aa11.64□□□□□ -0.55
VPS4B-204ENST00000589604 RBAK-RBAKDNI3L0D1 243 aa11.64□□□□□ -0.55
VPS4B-204ENST00000589604 ZBTB39O15060 712 aa11.64□□□□□ -0.55
VPS4B-204ENST00000589604 RHOBTB3O94955 611 aa11.64□□□□□ -0.55
VPS4B-204ENST00000589604 ATG7O95352 703 aa11.64□□□□□ -0.55
VPS4B-204ENST00000589604 MYL3P08590 195 aa11.64□□□□□ -0.55
VPS4B-204ENST00000589604 MLLT1Q03111 559 aaPredicted RBP11.64□□□□□ -0.55
VPS4B-204ENST00000589604 EHHADHQ08426 723 aa11.64□□□□□ -0.55
VPS4B-204ENST00000589604 DHX8Q14562 1220 aaKnown RBP11.64□□□□□ -0.55
VPS4B-204ENST00000589604 KMT5BQ4FZB7 885 aa11.64□□□□□ -0.55
VPS4B-204ENST00000589604 MLKLQ8NB16 471 aa11.64□□□□□ -0.55
VPS4B-204ENST00000589604 ARRDC4Q8NCT1 418 aa11.64□□□□□ -0.55
VPS4B-204ENST00000589604 C16orf70Q9BSU1 422 aa11.64□□□□□ -0.55
VPS4B-204ENST00000589604 HSD3B7Q9H2F3 369 aa11.64□□□□□ -0.55
VPS4B-204ENST00000589604 PCDH10Q9P2E7 1040 aa11.64□□□□□ -0.55
VPS4B-204ENST00000589604 ALPK3Q96L96 1907 aa11.64□□□□□ -0.55
VPS4B-204ENST00000589604 SCN10AQ9Y5Y9 1956 aa11.63□□□□□ -0.55
VPS4B-204ENST00000589604 ABCB7O75027 752 aa11.63□□□□□ -0.55
VPS4B-204ENST00000589604 EYA4O95677 639 aa11.63□□□□□ -0.55
VPS4B-204ENST00000589604 CYP11B2P19099 503 aa11.63□□□□□ -0.55
VPS4B-204ENST00000589604 TCF7P36402 384 aaPredicted RBP11.63□□□□□ -0.55
VPS4B-204ENST00000589604 CPT1AP50416 773 aa11.63□□□□□ -0.55
VPS4B-204ENST00000589604 AMPD3Q01432 767 aa11.63□□□□□ -0.55
VPS4B-204ENST00000589604 ZNF746Q6NUN9 644 aaPredicted RBP11.63□□□□□ -0.55
VPS4B-204ENST00000589604 ABHD15Q6UXT9 468 aa11.63□□□□□ -0.55
VPS4B-204ENST00000589604 MIER3Q7Z3K6 550 aa11.63□□□□□ -0.55
VPS4B-204ENST00000589604 SMYD4Q8IYR2 804 aaPredicted RBP11.63□□□□□ -0.55
VPS4B-204ENST00000589604 AOPEPQ8N6M6 819 aa11.63□□□□□ -0.55
VPS4B-204ENST00000589604 SYT2Q8N9I0 419 aaPredicted RBP11.63□□□□□ -0.55
VPS4B-204ENST00000589604 ANKLE1Q8NAG6 615 aa11.63□□□□□ -0.55
VPS4B-204ENST00000589604 GIMAP8Q8ND71 665 aaPredicted RBP11.63□□□□□ -0.55
VPS4B-204ENST00000589604 DDX12PQ92771 950 aa11.63□□□□□ -0.55
VPS4B-204ENST00000589604 IGKV6D-21A0A0A0MT36 114 aa11.62□□□□□ -0.55
VPS4B-204ENST00000589604 PVALEFA0A1B0GWK0 134 aa11.62□□□□□ -0.55
VPS4B-204ENST00000589604 KBTBD13C9JR72 458 aa11.62□□□□□ -0.55
VPS4B-204ENST00000589604 PPFIA4O75335 1185 aa11.62□□□□□ -0.55
VPS4B-204ENST00000589604 LYPLA2O95372 231 aa11.62□□□□□ -0.55
VPS4B-204ENST00000589604 LGALS2P05162 132 aa11.62□□□□□ -0.55
VPS4B-204ENST00000589604 P4HBP07237 508 aaKnown RBP11.62□□□□□ -0.55
VPS4B-204ENST00000589604 RGS19P49795 217 aa11.62□□□□□ -0.55
VPS4B-204ENST00000589604 KRT76Q01546 638 aa11.62□□□□□ -0.55
VPS4B-204ENST00000589604 HIC1Q14526 733 aa11.62□□□□□ -0.55
Retrieved 100 of 20,778 RNA–protein pairs in 28.5 ms