RNA–Protein interactions for RNA: ENST00000585799.5

SMARCA4-208, Transcript of SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily a, member 4, human

TSL 2

Gene SMARCA4, Length 3,842 nt, Biotype retained intron, Subcellular localisation Nucleus .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
SMARCA4-208	ENST00000585799	ANKFY1	Q9P2R3	1169 aa		13.61	□□□□□ -0.23
SMARCA4-208	ENST00000585799	POLG	P54098	1239 aa	Predicted RBP	13.6	□□□□□ -0.23
SMARCA4-208	ENST00000585799	OTUD6A	Q7L8S5	288 aa		13.6	□□□□□ -0.23
SMARCA4-208	ENST00000585799	DPH6	Q7L8W6	267 aa		13.6	□□□□□ -0.23
SMARCA4-208	ENST00000585799	APTX	Q7Z2E3	356 aa	Known RBP	13.6	□□□□□ -0.23
SMARCA4-208	ENST00000585799	CTNNBL1	Q8WYA6	563 aa	Predicted RBP	13.6	□□□□□ -0.23
SMARCA4-208	ENST00000585799	PPP1R16B	Q96T49	567 aa		13.6	□□□□□ -0.23
SMARCA4-208	ENST00000585799	GOLPH3	Q9H4A6	298 aa		13.6	□□□□□ -0.23
SMARCA4-208	ENST00000585799	KMT5A	Q9NQR1	393 aa		13.6	□□□□□ -0.23
SMARCA4-208	ENST00000585799	HYOU1	Q9Y4L1	999 aa		13.6	□□□□□ -0.23
SMARCA4-208	ENST00000585799	LRRC10B	A6NIK2	292 aa		13.6	□□□□□ -0.23
SMARCA4-208	ENST00000585799	ICAM1	P05362	532 aa		13.6	□□□□□ -0.23
SMARCA4-208	ENST00000585799	LMAN1	P49257	510 aa		13.6	□□□□□ -0.23
SMARCA4-208	ENST00000585799	SOX10	P56693	466 aa		13.6	□□□□□ -0.23
SMARCA4-208	ENST00000585799	DMP1	Q13316	513 aa	Predicted RBP	13.6	□□□□□ -0.23
SMARCA4-208	ENST00000585799	PDXDC1	Q6P996	788 aa		13.6	□□□□□ -0.23
SMARCA4-208	ENST00000585799	FAM83A	Q86UY5	434 aa		13.6	□□□□□ -0.23
SMARCA4-208	ENST00000585799	C7orf43	Q8WVR3	580 aa		13.6	□□□□□ -0.23
SMARCA4-208	ENST00000585799	RABGGTA	Q92696	567 aa		13.6	□□□□□ -0.23
SMARCA4-208	ENST00000585799	MTFR1L	Q9H019	292 aa		13.6	□□□□□ -0.23
SMARCA4-208	ENST00000585799	NR3C2	P08235	984 aa		13.6	□□□□□ -0.23
SMARCA4-208	ENST00000585799	CCDC172	P0C7W6	258 aa		13.6	□□□□□ -0.23
SMARCA4-208	ENST00000585799	CCND2	P30279	289 aa		13.6	□□□□□ -0.23
SMARCA4-208	ENST00000585799	SLC7A5	Q01650	507 aa		13.6	□□□□□ -0.23
SMARCA4-208	ENST00000585799	NFRKB	Q6P4R8	1299 aa		13.6	□□□□□ -0.23
SMARCA4-208	ENST00000585799	P2RX7	Q99572	595 aa	Known RBP	13.6	□□□□□ -0.23
SMARCA4-208	ENST00000585799	NUCKS1	Q9H1E3	243 aa	Known RBP	13.6	□□□□□ -0.23
SMARCA4-208	ENST00000585799	ST7	Q9NRC1	585 aa		13.6	□□□□□ -0.23
SMARCA4-208	ENST00000585799	VPS18	Q9P253	973 aa		13.6	□□□□□ -0.23
SMARCA4-208	ENST00000585799	CTTNBP2NL	Q9P2B4	639 aa		13.6	□□□□□ -0.23
SMARCA4-208	ENST00000585799	FHOD1	Q9Y613	1164 aa		13.6	□□□□□ -0.23
SMARCA4-208	ENST00000585799	DDN	O94850	711 aa	Predicted RBP	13.59	□□□□□ -0.23
SMARCA4-208	ENST00000585799	SLITRK3	O94933	977 aa		13.59	□□□□□ -0.23
SMARCA4-208	ENST00000585799	H2AFZ	P0C0S5	128 aa		13.59	□□□□□ -0.23
SMARCA4-208	ENST00000585799	IGBP1	P78318	339 aa		13.59	□□□□□ -0.23
SMARCA4-208	ENST00000585799	MAP3K9	P80192	1104 aa		13.59	□□□□□ -0.23
SMARCA4-208	ENST00000585799	GPR162	Q16538	588 aa		13.59	□□□□□ -0.23
SMARCA4-208	ENST00000585799	H2AFV	Q71UI9	128 aa		13.59	□□□□□ -0.23
SMARCA4-208	ENST00000585799	GSPT2	Q8IYD1	628 aa	Known RBP	13.59	□□□□□ -0.23
SMARCA4-208	ENST00000585799	LPAR1	Q92633	364 aa		13.59	□□□□□ -0.23
SMARCA4-208	ENST00000585799	ELP3	Q9H9T3	547 aa		13.59	□□□□□ -0.23
SMARCA4-208	ENST00000585799	UBE2T	Q9NPD8	197 aa	Predicted RBP	13.59	□□□□□ -0.23
SMARCA4-208	ENST00000585799	GOLGB1	Q14789	3259 aa	Known RBP	13.59	□□□□□ -0.23
SMARCA4-208	ENST00000585799	CTNND1	O60716	968 aa	Known RBP	13.59	□□□□□ -0.23
SMARCA4-208	ENST00000585799	SERPING1	P05155	500 aa		13.59	□□□□□ -0.23
SMARCA4-208	ENST00000585799	RPS6KA1	Q15418	735 aa		13.59	□□□□□ -0.23
SMARCA4-208	ENST00000585799	IFI16	Q16666	785 aa	Known RBP	13.59	□□□□□ -0.23
SMARCA4-208	ENST00000585799	C8orf74	Q6P047	294 aa		13.59	□□□□□ -0.23
SMARCA4-208	ENST00000585799	ALKBH5	Q6P6C2	394 aa	Known RBP	13.59	□□□□□ -0.23
SMARCA4-208	ENST00000585799	OTOP1	Q7RTM1	612 aa		13.59	□□□□□ -0.23
SMARCA4-208	ENST00000585799	PEX26	Q7Z412	305 aa		13.59	□□□□□ -0.23
SMARCA4-208	ENST00000585799	ELMO3	Q96BJ8	720 aa		13.59	□□□□□ -0.23
SMARCA4-208	ENST00000585799	ERGIC2	Q96RQ1	377 aa		13.59	□□□□□ -0.23
SMARCA4-208	ENST00000585799	CEP72	Q9P209	647 aa		13.59	□□□□□ -0.23
SMARCA4-208	ENST00000585799	AKAP3	O75969	853 aa		13.59	□□□□□ -0.23
SMARCA4-208	ENST00000585799	TGFB2	P61812	414 aa		13.59	□□□□□ -0.23
SMARCA4-208	ENST00000585799	STRN3	Q13033	797 aa		13.59	□□□□□ -0.23
SMARCA4-208	ENST00000585799	DAAM2	Q86T65	1068 aa		13.59	□□□□□ -0.23
SMARCA4-208	ENST00000585799	SYTL5	Q8TDW5	730 aa	Predicted RBP	13.59	□□□□□ -0.23
SMARCA4-208	ENST00000585799	ACCS	Q96QU6	501 aa		13.59	□□□□□ -0.23
SMARCA4-208	ENST00000585799	DNAJC12	Q9UKB3	198 aa		13.59	□□□□□ -0.23
SMARCA4-208	ENST00000585799	WDR64	B1ANS9	1081 aa		13.58	□□□□□ -0.23
SMARCA4-208	ENST00000585799	SPATA31C1	P0DKV0	1188 aa		13.58	□□□□□ -0.23
SMARCA4-208	ENST00000585799	YWHAB	P31946	246 aa	Known RBP	13.58	□□□□□ -0.23
SMARCA4-208	ENST00000585799	LIG4	P49917	911 aa		13.58	□□□□□ -0.23
SMARCA4-208	ENST00000585799	MAP2K1	Q02750	393 aa	Predicted RBP	13.58	□□□□□ -0.23
SMARCA4-208	ENST00000585799	TKFC	Q3LXA3	575 aa		13.58	□□□□□ -0.23
SMARCA4-208	ENST00000585799		Q4G0T1	1027 aa		13.58	□□□□□ -0.23
SMARCA4-208	ENST00000585799	LMBRD2	Q68DH5	695 aa	Predicted RBP	13.58	□□□□□ -0.23
SMARCA4-208	ENST00000585799	PPP4R3CP	Q6ZMV5	832 aa		13.58	□□□□□ -0.23
SMARCA4-208	ENST00000585799	METTL13	Q8N6R0	699 aa		13.58	□□□□□ -0.23
SMARCA4-208	ENST00000585799	DEPTOR	Q8TB45	409 aa		13.58	□□□□□ -0.23
SMARCA4-208	ENST00000585799	ETNPPL	Q8TBG4	499 aa		13.58	□□□□□ -0.23
SMARCA4-208	ENST00000585799	EHD2	Q9NZN4	543 aa		13.58	□□□□□ -0.23
SMARCA4-208	ENST00000585799	BCCIP	Q9P287	314 aa	Known RBP eCLIP	13.58	□□□□□ -0.23
SMARCA4-208	ENST00000585799	ARHGAP20	Q9P2F6	1191 aa		13.58	□□□□□ -0.23
SMARCA4-208	ENST00000585799	EXOC7	Q9UPT5	735 aa		13.58	□□□□□ -0.23
SMARCA4-208	ENST00000585799	USP20	Q9Y2K6	914 aa		13.58	□□□□□ -0.23
SMARCA4-208	ENST00000585799	EIF3CL	B5ME19	914 aa	Known RBP	13.58	□□□□□ -0.24
SMARCA4-208	ENST00000585799	TISP43	B9A030	160 aa		13.58	□□□□□ -0.24
SMARCA4-208	ENST00000585799	CLK2	P49760	499 aa	Known RBP	13.58	□□□□□ -0.24
SMARCA4-208	ENST00000585799	HERVK_113	P62684	666 aa		13.58	□□□□□ -0.24
SMARCA4-208	ENST00000585799	LONRF2	Q1L5Z9	754 aa		13.58	□□□□□ -0.24
SMARCA4-208	ENST00000585799	ARSH	Q5FYA8	562 aa		13.58	□□□□□ -0.24
SMARCA4-208	ENST00000585799	ZNF746	Q6NUN9	644 aa	Predicted RBP	13.58	□□□□□ -0.24
SMARCA4-208	ENST00000585799	HAUS6	Q7Z4H7	955 aa		13.58	□□□□□ -0.24
SMARCA4-208	ENST00000585799	EIF3C	Q99613	913 aa	Known RBP	13.58	□□□□□ -0.24
SMARCA4-208	ENST00000585799	L2HGDH	Q9H9P8	463 aa		13.58	□□□□□ -0.24
SMARCA4-208	ENST00000585799	TUFT1	Q9NNX1	390 aa		13.58	□□□□□ -0.24
SMARCA4-208	ENST00000585799	PLIN4	Q96Q06	1357 aa		13.58	□□□□□ -0.24
SMARCA4-208	ENST00000585799	CCDC88A	Q3V6T2	1871 aa		13.58	□□□□□ -0.24
SMARCA4-208	ENST00000585799	SLC12A3	P55017	1021 aa		13.58	□□□□□ -0.24
SMARCA4-208	ENST00000585799	SND1	Q7KZF4	910 aa	Known RBP eCLIP	13.58	□□□□□ -0.24
SMARCA4-208	ENST00000585799	NOA1	Q8NC60	698 aa	Known RBP	13.58	□□□□□ -0.24
SMARCA4-208	ENST00000585799	ZNF507	Q8TCN5	953 aa		13.58	□□□□□ -0.24
SMARCA4-208	ENST00000585799	NSUN6	Q8TEA1	469 aa	Known RBP	13.58	□□□□□ -0.24
SMARCA4-208	ENST00000585799	ANKRD7	Q92527	254 aa		13.58	□□□□□ -0.24
SMARCA4-208	ENST00000585799	ATP6V0A1	Q93050	837 aa		13.58	□□□□□ -0.24
SMARCA4-208	ENST00000585799	IQCD	Q96DY2	449 aa		13.58	□□□□□ -0.24
SMARCA4-208	ENST00000585799	AZI2	Q9H6S1	392 aa		13.58	□□□□□ -0.24

Retrieved 100 of 20,778 RNA–protein pairs in 39.7 ms