RNA–Protein interactions for RNA: ENST00000582448.5

SS18-221, Transcript of SS18, nBAF chromatin remodeling complex subunit, humanhuman

TSL 5

Gene SS18, Length 585 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SS18-221ENST00000582448 KCNA10Q16322 511 aa11.8□□□□□ -0.52
SS18-221ENST00000582448 ZNF792Q3KQV3 632 aa11.8□□□□□ -0.52
SS18-221ENST00000582448 SYNE3Q6ZMZ3 975 aa11.8□□□□□ -0.52
SS18-221ENST00000582448 RIOX2Q8IUF8 465 aa11.8□□□□□ -0.52
SS18-221ENST00000582448 DMRTC2Q8IXT2 367 aaPredicted RBP11.8□□□□□ -0.52
SS18-221ENST00000582448 NUP133Q8WUM0 1156 aa11.8□□□□□ -0.52
SS18-221ENST00000582448 DDX11Q96FC9 970 aa11.8□□□□□ -0.52
SS18-221ENST00000582448 ZNF274Q96GC6 653 aaPredicted RBP11.8□□□□□ -0.52
SS18-221ENST00000582448 TMEM87BQ96K49 555 aa11.8□□□□□ -0.52
SS18-221ENST00000582448 BUD13Q9BRD0 619 aaKnown RBP eCLIP11.8□□□□□ -0.52
SS18-221ENST00000582448 LLPHQ9BRT6 129 aaKnown RBP11.8□□□□□ -0.52
SS18-221ENST00000582448 SMG9Q9H0W8 520 aaKnown RBP11.8□□□□□ -0.52
SS18-221ENST00000582448 PRDM12Q9H4Q4 367 aa11.8□□□□□ -0.52
SS18-221ENST00000582448 EPB41L4AQ9HCS5 686 aaPredicted RBP11.8□□□□□ -0.52
SS18-221ENST00000582448 ARPP21Q9UBL0 812 aaPredicted RBP11.8□□□□□ -0.52
SS18-221ENST00000582448 ZHX1Q9UKY1 873 aaPredicted RBP11.8□□□□□ -0.52
SS18-221ENST00000582448 ATP6V1DQ9Y5K8 247 aa11.8□□□□□ -0.52
SS18-221ENST00000582448 MYH7P12883 1935 aa11.8□□□□□ -0.52
SS18-221ENST00000582448 A0A0A0MRY4 1105 aa11.79□□□□□ -0.52
SS18-221ENST00000582448 TIMP1P01033 207 aa11.79□□□□□ -0.52
SS18-221ENST00000582448 ACRP10323 421 aa11.79□□□□□ -0.52
SS18-221ENST00000582448 EIF2AK2P19525 551 aaKnown RBP11.79□□□□□ -0.52
SS18-221ENST00000582448 MPSTP25325 297 aa11.79□□□□□ -0.52
SS18-221ENST00000582448 MCM4P33991 863 aa11.79□□□□□ -0.52
SS18-221ENST00000582448 CDK8P49336 464 aa11.79□□□□□ -0.52
SS18-221ENST00000582448 FAM83BQ5T0W9 1011 aa11.79□□□□□ -0.52
SS18-221ENST00000582448 CPLX2Q6PUV4 134 aaKnown RBP11.79□□□□□ -0.52
SS18-221ENST00000582448 NFXL1Q6ZNB6 911 aa11.79□□□□□ -0.52
SS18-221ENST00000582448 MB21D2Q8IYB1 491 aaPredicted RBP11.79□□□□□ -0.52
SS18-221ENST00000582448 STK11IPQ8N1F8 1099 aa11.79□□□□□ -0.52
SS18-221ENST00000582448 FAM184AQ8NB25 1140 aa11.79□□□□□ -0.52
SS18-221ENST00000582448 STAG1Q8WVM7 1258 aa11.79□□□□□ -0.52
SS18-221ENST00000582448 ESR2Q92731 530 aa11.79□□□□□ -0.52
SS18-221ENST00000582448 GTF3C6Q969F1 213 aa11.79□□□□□ -0.52
SS18-221ENST00000582448 NRBP1Q9UHY1 535 aa11.79□□□□□ -0.52
SS18-221ENST00000582448 FAM184BQ9ULE4 1060 aa11.79□□□□□ -0.52
SS18-221ENST00000582448 PRUNE2Q8WUY3 3088 aa11.79□□□□□ -0.52
SS18-221ENST00000582448 SMCHD1A6NHR9 2005 aa11.79□□□□□ -0.52
SS18-221ENST00000582448 MYADML2A6NDP7 307 aa11.78□□□□□ -0.52
SS18-221ENST00000582448 VWA5AO00534 786 aa11.78□□□□□ -0.52
SS18-221ENST00000582448 PFKFB2O60825 505 aa11.78□□□□□ -0.52
SS18-221ENST00000582448 ADAMTS4O75173 837 aa11.78□□□□□ -0.52
SS18-221ENST00000582448 C6orf222P0C671 652 aaPredicted RBP11.78□□□□□ -0.52
SS18-221ENST00000582448 GJB2P29033 226 aa11.78□□□□□ -0.52
SS18-221ENST00000582448 SOX18P35713 384 aa11.78□□□□□ -0.52
SS18-221ENST00000582448 HMGN5P82970 282 aaKnown RBP11.78□□□□□ -0.52
SS18-221ENST00000582448 APOBRQ0VD83 1088 aa11.78□□□□□ -0.52
SS18-221ENST00000582448 RRP12Q5JTH9 1297 aaKnown RBP11.78□□□□□ -0.52
SS18-221ENST00000582448 TMEM240Q5SV17 173 aa11.78□□□□□ -0.52
SS18-221ENST00000582448 ANKRD33Q7Z3H0 272 aa11.78□□□□□ -0.52
SS18-221ENST00000582448 TBC1D10CQ8IV04 446 aa11.78□□□□□ -0.52
SS18-221ENST00000582448 CPXCR1Q8N123 301 aa11.78□□□□□ -0.52
SS18-221ENST00000582448 TMTC2Q8N394 836 aa11.78□□□□□ -0.52
SS18-221ENST00000582448 NECAB1Q8N987 351 aa11.78□□□□□ -0.52
SS18-221ENST00000582448 TTC9Q92623 222 aa11.78□□□□□ -0.52
SS18-221ENST00000582448 CCDC17Q96LX7 622 aa11.78□□□□□ -0.52
SS18-221ENST00000582448 GLT1D1Q96MS3 346 aa11.78□□□□□ -0.52
SS18-221ENST00000582448 TOX2Q96NM4 488 aa11.78□□□□□ -0.52
SS18-221ENST00000582448 UBAC1Q9BSL1 405 aa11.78□□□□□ -0.52
SS18-221ENST00000582448 MTA3Q9BTC8 594 aa11.78□□□□□ -0.52
SS18-221ENST00000582448 LRRC2Q9BYS8 371 aa11.78□□□□□ -0.52
SS18-221ENST00000582448 PBX4Q9BYU1 374 aa11.78□□□□□ -0.52
SS18-221ENST00000582448 AGXT2Q9BYV1 514 aa11.78□□□□□ -0.52
SS18-221ENST00000582448 ZNF287Q9HBT7 754 aa11.78□□□□□ -0.52
SS18-221ENST00000582448 ANAPC4Q9UJX5 808 aa11.78□□□□□ -0.52
SS18-221ENST00000582448 PPP1R9AQ9ULJ8 1098 aa11.78□□□□□ -0.52
SS18-221ENST00000582448 DIS3Q9Y2L1 958 aaKnown RBP11.78□□□□□ -0.52
SS18-221ENST00000582448 CTDP1Q9Y5B0 961 aaPredicted RBP11.78□□□□□ -0.52
SS18-221ENST00000582448 SYNRGQ9UMZ2 1314 aa11.78□□□□□ -0.52
SS18-221ENST00000582448 KLF18A0A0U1RQI7 1052 aa11.77□□□□□ -0.53
SS18-221ENST00000582448 CCDC69A6NI79 296 aa11.77□□□□□ -0.53
SS18-221ENST00000582448 GOLGA8BA8MQT2 603 aa11.77□□□□□ -0.53
SS18-221ENST00000582448 CPLX1O14810 134 aa11.77□□□□□ -0.53
SS18-221ENST00000582448 IFIT3O14879 490 aaKnown RBP11.77□□□□□ -0.53
SS18-221ENST00000582448 STX6O43752 255 aa11.77□□□□□ -0.53
SS18-221ENST00000582448 CDKL5O76039 1030 aa11.77□□□□□ -0.53
SS18-221ENST00000582448 LARGE1O95461 756 aa11.77□□□□□ -0.53
SS18-221ENST00000582448 CSF2RAP15509 400 aa11.77□□□□□ -0.53
SS18-221ENST00000582448 PDE4BQ07343 736 aa11.77□□□□□ -0.53
SS18-221ENST00000582448 PPIGQ13427 754 aaKnown RBP eCLIP11.77□□□□□ -0.53
SS18-221ENST00000582448 SUZ12Q15022 739 aaKnown RBP11.77□□□□□ -0.53
SS18-221ENST00000582448 SKOR2Q2VWA4 1001 aaPredicted RBP11.77□□□□□ -0.53
SS18-221ENST00000582448 TMEM67Q5HYA8 995 aa11.77□□□□□ -0.53
SS18-221ENST00000582448 LARP1BQ659C4 914 aaKnown RBP11.77□□□□□ -0.53
SS18-221ENST00000582448 MFSD5Q6N075 450 aa11.77□□□□□ -0.53
SS18-221ENST00000582448 CCDC174Q6PII3 467 aa11.77□□□□□ -0.53
SS18-221ENST00000582448 ZNF365Q70YC5 407 aa11.77□□□□□ -0.53
SS18-221ENST00000582448 CHST3Q7LGC8 479 aa11.77□□□□□ -0.53
SS18-221ENST00000582448 TMEM199Q8N511 208 aa11.77□□□□□ -0.53
SS18-221ENST00000582448 OR13H1Q8NG92 308 aa11.77□□□□□ -0.53
SS18-221ENST00000582448 EDEM1Q92611 657 aa11.77□□□□□ -0.53
SS18-221ENST00000582448 NUP88Q99567 741 aaPredicted RBP11.77□□□□□ -0.53
SS18-221ENST00000582448 KANSL2Q9H9L4 492 aa11.77□□□□□ -0.53
SS18-221ENST00000582448 ADAMTS5Q9UNA0 930 aa11.77□□□□□ -0.53
SS18-221ENST00000582448 B4E1Z4 1266 aa11.76□□□□□ -0.53
SS18-221ENST00000582448 BRD1O95696 1058 aa11.76□□□□□ -0.53
SS18-221ENST00000582448 SNAI1O95863 264 aaPredicted RBP11.76□□□□□ -0.53
SS18-221ENST00000582448 ASGR1P07306 291 aa11.76□□□□□ -0.53
SS18-221ENST00000582448 EIF1AXP47813 144 aaKnown RBP11.76□□□□□ -0.53
SS18-221ENST00000582448 EVCP57679 992 aa11.76□□□□□ -0.53
Retrieved 100 of 20,778 RNA–protein pairs in 18.8 ms