RNA–Protein interactions for RNA: ENST00000572607.1

VPS53-214, Transcript of VPS53, GARP complex subunit, humanhuman

TSL 3

Gene VPS53, Length 732 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53-214ENST00000572607 NONOQ15233 471 aaKnown RBP eCLIP9.17□□□□□ -0.94
VPS53-214ENST00000572607 GRIK4Q16099 956 aa9.17□□□□□ -0.94
VPS53-214ENST00000572607 ZNF618Q5T7W0 954 aa9.17□□□□□ -0.94
VPS53-214ENST00000572607 ZNF746Q6NUN9 644 aaPredicted RBP9.17□□□□□ -0.94
VPS53-214ENST00000572607 CNKSR3Q6P9H4 555 aa9.17□□□□□ -0.94
VPS53-214ENST00000572607 PLPPR4Q7Z2D5 763 aa9.17□□□□□ -0.94
VPS53-214ENST00000572607 CKAP2LQ8IYA6 745 aa9.17□□□□□ -0.94
VPS53-214ENST00000572607 SMAP1Q8IYB5 467 aaPredicted RBP9.17□□□□□ -0.94
VPS53-214ENST00000572607 PHOSPHO2Q8TCD6 241 aa9.17□□□□□ -0.94
VPS53-214ENST00000572607 TBCKQ8TEA7 893 aa9.17□□□□□ -0.94
VPS53-214ENST00000572607 LMBR1Q8WVP7 490 aa9.17□□□□□ -0.94
VPS53-214ENST00000572607 CRYGNQ8WXF5 182 aa9.17□□□□□ -0.94
VPS53-214ENST00000572607 ZNF516Q92618 1163 aa9.17□□□□□ -0.94
VPS53-214ENST00000572607 SYMPKQ92797 1274 aaKnown RBP9.17□□□□□ -0.94
VPS53-214ENST00000572607 GTF3C6Q969F1 213 aa9.17□□□□□ -0.94
VPS53-214ENST00000572607 CTAGE1Q96RT6 745 aa9.17□□□□□ -0.94
VPS53-214ENST00000572607 PBX4Q9BYU1 374 aa9.17□□□□□ -0.94
VPS53-214ENST00000572607 PRKD2Q9BZL6 878 aa9.17□□□□□ -0.94
VPS53-214ENST00000572607 ZNF302Q9NR11 478 aa9.17□□□□□ -0.94
VPS53-214ENST00000572607 CXXC1Q9P0U4 656 aaPredicted RBP9.17□□□□□ -0.94
VPS53-214ENST00000572607 ORC3Q9UBD5 711 aaPredicted RBP9.17□□□□□ -0.94
VPS53-214ENST00000572607 TUBE1Q9UJT0 475 aa9.17□□□□□ -0.94
VPS53-214ENST00000572607 TELO2Q9Y4R8 837 aa9.17□□□□□ -0.94
VPS53-214ENST00000572607 SAMM50Q9Y512 469 aa9.17□□□□□ -0.94
VPS53-214ENST00000572607 ABHD14A-ACY1A0A1B0GW23 586 aa9.16□□□□□ -0.94
VPS53-214ENST00000572607 WDR64B1ANS9 1081 aa9.16□□□□□ -0.94
VPS53-214ENST00000572607 M0QZ92 97 aa9.16□□□□□ -0.94
VPS53-214ENST00000572607 GAS7O60861 476 aa9.16□□□□□ -0.94
VPS53-214ENST00000572607 CXCL10P02778 98 aa9.16□□□□□ -0.94
VPS53-214ENST00000572607 PSAPP07602 524 aa9.16□□□□□ -0.94
VPS53-214ENST00000572607 IKBKEQ14164 716 aa9.16□□□□□ -0.94
VPS53-214ENST00000572607 HIC1Q14526 733 aa9.16□□□□□ -0.94
VPS53-214ENST00000572607 ME3Q16798 604 aa9.16□□□□□ -0.94
VPS53-214ENST00000572607 TRIM71Q2Q1W2 868 aaKnown RBP9.16□□□□□ -0.94
VPS53-214ENST00000572607 PDXDC2PQ6P474 469 aa9.16□□□□□ -0.94
VPS53-214ENST00000572607 NECAB1Q8N987 351 aa9.16□□□□□ -0.94
VPS53-214ENST00000572607 SEPT8Q92599 483 aa9.16□□□□□ -0.94
VPS53-214ENST00000572607 WNT8BQ93098 351 aa9.16□□□□□ -0.94
VPS53-214ENST00000572607 AIFM3Q96NN9 605 aa9.16□□□□□ -0.94
VPS53-214ENST00000572607 NAP1L4Q99733 375 aaKnown RBP9.16□□□□□ -0.94
VPS53-214ENST00000572607 TEKT3Q9BXF9 490 aa9.16□□□□□ -0.94
VPS53-214ENST00000572607 ZNF576Q9H609 170 aa9.16□□□□□ -0.94
VPS53-214ENST00000572607 SLC28A3Q9HAS3 691 aa9.16□□□□□ -0.94
VPS53-214ENST00000572607 EIF4ENIF1Q9NRA8 985 aaKnown RBP9.16□□□□□ -0.94
VPS53-214ENST00000572607 KCNJ14Q9UNX9 436 aa9.16□□□□□ -0.94
VPS53-214ENST00000572607 LIMCH1Q9UPQ0 1083 aa9.16□□□□□ -0.94
VPS53-214ENST00000572607 PCDHA10Q9Y5I2 948 aa9.16□□□□□ -0.94
VPS53-214ENST00000572607 ADAMTS3O15072 1205 aa9.15□□□□□ -0.94
VPS53-214ENST00000572607 MSH4O15457 936 aa9.15□□□□□ -0.94
VPS53-214ENST00000572607 CHMP2AO43633 222 aa9.15□□□□□ -0.94
VPS53-214ENST00000572607 MARCH6O60337 910 aa9.15□□□□□ -0.94
VPS53-214ENST00000572607 HBP1O60381 514 aa9.15□□□□□ -0.94
VPS53-214ENST00000572607 NBNO60934 754 aa9.15□□□□□ -0.94
VPS53-214ENST00000572607 RNF40O75150 1001 aa9.15□□□□□ -0.94
VPS53-214ENST00000572607 ATG7O95352 703 aa9.15□□□□□ -0.94
VPS53-214ENST00000572607 CCNE2O96020 404 aa9.15□□□□□ -0.94
VPS53-214ENST00000572607 AMHP03971 560 aa9.15□□□□□ -0.94
VPS53-214ENST00000572607 INSRRP14616 1297 aa9.15□□□□□ -0.94
VPS53-214ENST00000572607 KRT2P35908 639 aa9.15□□□□□ -0.94
VPS53-214ENST00000572607 JAK3P52333 1124 aa9.15□□□□□ -0.94
VPS53-214ENST00000572607 PLCB4Q15147 1175 aa9.15□□□□□ -0.94
VPS53-214ENST00000572607 LETM2Q2VYF4 491 aa9.15□□□□□ -0.94
VPS53-214ENST00000572607 C8orf34Q49A92 452 aa9.15□□□□□ -0.94
VPS53-214ENST00000572607 Q4G0T1 1027 aa9.15□□□□□ -0.94
VPS53-214ENST00000572607 LRCH2Q5VUJ6 765 aa9.15□□□□□ -0.94
VPS53-214ENST00000572607 PPP2R2DQ66LE6 453 aa9.15□□□□□ -0.94
VPS53-214ENST00000572607 SWSAP1Q6NVH7 229 aa9.15□□□□□ -0.94
VPS53-214ENST00000572607 PADI6Q6TGC4 694 aa9.15□□□□□ -0.94
VPS53-214ENST00000572607 MOXD1Q6UVY6 613 aa9.15□□□□□ -0.94
VPS53-214ENST00000572607 ABHD15Q6UXT9 468 aa9.15□□□□□ -0.94
VPS53-214ENST00000572607 HERC6Q8IVU3 1022 aa9.15□□□□□ -0.94
VPS53-214ENST00000572607 ATP8B4Q8TF62 1192 aa9.15□□□□□ -0.94
VPS53-214ENST00000572607 APBB2Q92870 758 aa9.15□□□□□ -0.94
VPS53-214ENST00000572607 VWCEQ96DN2 955 aa9.15□□□□□ -0.94
VPS53-214ENST00000572607 FAM167AQ96KS9 214 aa9.15□□□□□ -0.94
VPS53-214ENST00000572607 ZSCAN31Q96LW9 406 aaPredicted RBP9.15□□□□□ -0.94
VPS53-214ENST00000572607 UIMC1Q96RL1 719 aa9.15□□□□□ -0.94
VPS53-214ENST00000572607 PCYT2Q99447 389 aa9.15□□□□□ -0.94
VPS53-214ENST00000572607 RIT2Q99578 217 aa9.15□□□□□ -0.94
VPS53-214ENST00000572607 PHF20Q9BVI0 1012 aa9.15□□□□□ -0.94
VPS53-214ENST00000572607 FAM49AQ9H0Q0 323 aaPredicted RBP9.15□□□□□ -0.94
VPS53-214ENST00000572607 NKX2-4Q9H2Z4 354 aa9.15□□□□□ -0.94
VPS53-214ENST00000572607 DDX25Q9UHL0 483 aaKnown RBP9.15□□□□□ -0.94
VPS53-214ENST00000572607 CEP131Q9UPN4 1083 aa9.15□□□□□ -0.94
VPS53-214ENST00000572607 PCDHA11Q9Y5I1 949 aa9.15□□□□□ -0.94
VPS53-214ENST00000572607 PTPRSQ13332 1948 aa9.15□□□□□ -0.95
VPS53-214ENST00000572607 COL1A2P08123 1366 aa9.14□□□□□ -0.95
VPS53-214ENST00000572607 IGKV6D-21A0A0A0MT36 114 aa9.14□□□□□ -0.95
VPS53-214ENST00000572607 DHX15O43143 795 aaKnown RBP9.14□□□□□ -0.95
VPS53-214ENST00000572607 CTDNEP1O95476 244 aa9.14□□□□□ -0.95
VPS53-214ENST00000572607 TDP2O95551 362 aa9.14□□□□□ -0.95
VPS53-214ENST00000572607 GCFC2P16383 781 aaKnown RBP9.14□□□□□ -0.95
VPS53-214ENST00000572607 SFNP31947 248 aa9.14□□□□□ -0.95
VPS53-214ENST00000572607 PLA2G5P39877 138 aa9.14□□□□□ -0.95
VPS53-214ENST00000572607 RABGGTBP53611 331 aa9.14□□□□□ -0.95
VPS53-214ENST00000572607 WDR5P61964 334 aaKnown RBP9.14□□□□□ -0.95
VPS53-214ENST00000572607 ADAM17P78536 824 aa9.14□□□□□ -0.95
VPS53-214ENST00000572607 SAFBQ15424 915 aaKnown RBP eCLIP9.14□□□□□ -0.95
VPS53-214ENST00000572607 INF2Q27J81 1249 aa9.14□□□□□ -0.95
VPS53-214ENST00000572607 ZNF484Q5JVG2 852 aa9.14□□□□□ -0.95
Retrieved 100 of 20,778 RNA–protein pairs in 43.6 ms