RNA–Protein interactions for RNA: ENST00000570650.1

VPS53-208, Transcript of VPS53, GARP complex subunit, humanhuman

TSL 2

Gene VPS53, Length 729 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53-208ENST00000570650 VCPP55072 806 aaKnown RBP6.87□□□□□ -1.31
VPS53-208ENST00000570650 RPS6P62753 249 aaKnown RBP6.87□□□□□ -1.31
VPS53-208ENST00000570650 TFAP4Q01664 338 aa6.87□□□□□ -1.31
VPS53-208ENST00000570650 ARHGAP1Q07960 439 aa6.87□□□□□ -1.31
VPS53-208ENST00000570650 SIGLEC14Q08ET2 396 aa6.87□□□□□ -1.31
VPS53-208ENST00000570650 GAS6Q14393 721 aa6.87□□□□□ -1.31
VPS53-208ENST00000570650 CCDC96Q2M329 555 aa6.87□□□□□ -1.31
VPS53-208ENST00000570650 PLEKHG4Q58EX7 1191 aa6.87□□□□□ -1.31
VPS53-208ENST00000570650 CCDC62Q6P9F0 684 aa6.87□□□□□ -1.31
VPS53-208ENST00000570650 TSEN2Q8NCE0 465 aaKnown RBP6.87□□□□□ -1.31
VPS53-208ENST00000570650 ZDHHC1Q8WTX9 485 aa6.87□□□□□ -1.31
VPS53-208ENST00000570650 CLEC4DQ8WXI8 215 aa6.87□□□□□ -1.31
VPS53-208ENST00000570650 WNT8BQ93098 351 aa6.87□□□□□ -1.31
VPS53-208ENST00000570650 TOP1MTQ969P6 601 aa6.87□□□□□ -1.31
VPS53-208ENST00000570650 GTPBP3Q969Y2 492 aaKnown RBP6.87□□□□□ -1.31
VPS53-208ENST00000570650 ALG1Q9BT22 464 aa6.87□□□□□ -1.31
VPS53-208ENST00000570650 C11orf84Q9BUA3 381 aaPredicted RBP6.87□□□□□ -1.31
VPS53-208ENST00000570650 RUBCNLQ9H714 662 aa6.87□□□□□ -1.31
VPS53-208ENST00000570650 EPB41L4AQ9HCS5 686 aaPredicted RBP6.87□□□□□ -1.31
VPS53-208ENST00000570650 PNMA2Q9UL42 364 aa6.87□□□□□ -1.31
VPS53-208ENST00000570650 STX8Q9UNK0 236 aa6.87□□□□□ -1.31
VPS53-208ENST00000570650 CFAP54Q96N23 3096 aa6.86□□□□□ -1.31
VPS53-208ENST00000570650 PLXNA3P51805 1871 aa6.86□□□□□ -1.31
VPS53-208ENST00000570650 RALGAPA2Q2PPJ7 1873 aa6.86□□□□□ -1.31
VPS53-208ENST00000570650 NLRC5Q86WI3 1866 aa6.86□□□□□ -1.31
VPS53-208ENST00000570650 RSPH10B2B2RC85 870 aa6.86□□□□□ -1.31
VPS53-208ENST00000570650 LOC730098B7Z3J9 87 aa6.86□□□□□ -1.31
VPS53-208ENST00000570650 C5orf67F2Z3F1 127 aa6.86□□□□□ -1.31
VPS53-208ENST00000570650 H0Y858 1186 aa6.86□□□□□ -1.31
VPS53-208ENST00000570650 HAS3O00219 553 aa6.86□□□□□ -1.31
VPS53-208ENST00000570650 GRM6O15303 877 aa6.86□□□□□ -1.31
VPS53-208ENST00000570650 GPAA1O43292 621 aa6.86□□□□□ -1.31
VPS53-208ENST00000570650 RAB11FIP3O75154 756 aa6.86□□□□□ -1.31
VPS53-208ENST00000570650 EYA4O95677 639 aa6.86□□□□□ -1.31
VPS53-208ENST00000570650 F2P00734 622 aa6.86□□□□□ -1.31
VPS53-208ENST00000570650 APPP05067 770 aa6.86□□□□□ -1.31
VPS53-208ENST00000570650 SLC3A2P08195 630 aaKnown RBP6.86□□□□□ -1.31
VPS53-208ENST00000570650 RSPH10BP0C881 870 aa6.86□□□□□ -1.31
VPS53-208ENST00000570650 RLBP1P12271 317 aa6.86□□□□□ -1.31
VPS53-208ENST00000570650 GNAT2P19087 354 aa6.86□□□□□ -1.31
VPS53-208ENST00000570650 RFX1P22670 979 aa6.86□□□□□ -1.31
VPS53-208ENST00000570650 NDUFV1P49821 464 aa6.86□□□□□ -1.31
VPS53-208ENST00000570650 CBX2Q14781 532 aaPredicted RBP6.86□□□□□ -1.31
VPS53-208ENST00000570650 DGKDQ16760 1214 aa6.86□□□□□ -1.31
VPS53-208ENST00000570650 LY6KQ17RY6 165 aa6.86□□□□□ -1.31
VPS53-208ENST00000570650 KIAA0753Q2KHM9 967 aa6.86□□□□□ -1.31
VPS53-208ENST00000570650 SYDE2Q5VT97 1194 aa6.86□□□□□ -1.31
VPS53-208ENST00000570650 BTNL9Q6UXG8 535 aa6.86□□□□□ -1.31
VPS53-208ENST00000570650 SEPT14Q6ZU15 432 aa6.86□□□□□ -1.31
VPS53-208ENST00000570650 RASGRP2Q7LDG7 609 aa6.86□□□□□ -1.31
VPS53-208ENST00000570650 CHST3Q7LGC8 479 aa6.86□□□□□ -1.31
VPS53-208ENST00000570650 ASCL5Q7RTU5 278 aa6.86□□□□□ -1.31
VPS53-208ENST00000570650 SLC9A9Q8IVB4 645 aa6.86□□□□□ -1.31
VPS53-208ENST00000570650 DHX37Q8IY37 1157 aaKnown RBP6.86□□□□□ -1.31
VPS53-208ENST00000570650 FIBCD1Q8N539 461 aa6.86□□□□□ -1.31
VPS53-208ENST00000570650 DCAF4Q8WV16 495 aa6.86□□□□□ -1.31
VPS53-208ENST00000570650 SEPT8Q92599 483 aa6.86□□□□□ -1.31
VPS53-208ENST00000570650 APPBP2Q92624 585 aa6.86□□□□□ -1.31
VPS53-208ENST00000570650 OSBP2Q969R2 916 aa6.86□□□□□ -1.31
VPS53-208ENST00000570650 MSLNLQ96KJ4 702 aa6.86□□□□□ -1.31
VPS53-208ENST00000570650 FSD1Q9BTV5 496 aa6.86□□□□□ -1.31
VPS53-208ENST00000570650 NUCKS1Q9H1E3 243 aaKnown RBP6.86□□□□□ -1.31
VPS53-208ENST00000570650 IGFLR1Q9H665 355 aa6.86□□□□□ -1.31
VPS53-208ENST00000570650 VRTNQ9H8Y1 702 aa6.86□□□□□ -1.31
VPS53-208ENST00000570650 TLR9Q9NR96 1032 aa6.86□□□□□ -1.31
VPS53-208ENST00000570650 MTMR7Q9Y216 660 aa6.86□□□□□ -1.31
VPS53-208ENST00000570650 RWDD3Q9Y3V2 267 aa6.86□□□□□ -1.31
VPS53-208ENST00000570650 CACNA1AO00555 2505 aa6.86□□□□□ -1.31
VPS53-208ENST00000570650 PRR23AA6NEV1 266 aa6.85□□□□□ -1.31
VPS53-208ENST00000570650 TSPY2A6NKD2 308 aa6.85□□□□□ -1.31
VPS53-208ENST00000570650 RBAK-RBAKDNI3L0D1 243 aa6.85□□□□□ -1.31
VPS53-208ENST00000570650 LINC01565O15544 149 aa6.85□□□□□ -1.31
VPS53-208ENST00000570650 HMMRO75330 724 aa6.85□□□□□ -1.31
VPS53-208ENST00000570650 MMP1P03956 469 aa6.85□□□□□ -1.31
VPS53-208ENST00000570650 GTF2F1P35269 517 aaKnown RBP eCLIP6.85□□□□□ -1.31
VPS53-208ENST00000570650 SLC16A2P36021 539 aa6.85□□□□□ -1.31
VPS53-208ENST00000570650 BMPR1AP36894 532 aa6.85□□□□□ -1.31
VPS53-208ENST00000570650 THPOP40225 353 aa6.85□□□□□ -1.31
VPS53-208ENST00000570650 ID4P47928 161 aa6.85□□□□□ -1.31
VPS53-208ENST00000570650 ZNF200P98182 395 aaPredicted RBP6.85□□□□□ -1.31
VPS53-208ENST00000570650 INSM1Q01101 510 aaPredicted RBP6.85□□□□□ -1.31
VPS53-208ENST00000570650 PPARAQ07869 468 aa6.85□□□□□ -1.31
VPS53-208ENST00000570650 DPYDQ12882 1025 aa6.85□□□□□ -1.31
VPS53-208ENST00000570650 ADAM15Q13444 863 aa6.85□□□□□ -1.31
VPS53-208ENST00000570650 UBAP2LQ14157 1087 aaKnown RBP6.85□□□□□ -1.31
VPS53-208ENST00000570650 SH3PXD2AQ5TCZ1 1133 aa6.85□□□□□ -1.31
VPS53-208ENST00000570650 TTBK2Q6IQ55 1244 aa6.85□□□□□ -1.31
VPS53-208ENST00000570650 IFNL3Q8IZI9 196 aa6.85□□□□□ -1.31
VPS53-208ENST00000570650 SMRP1Q8NCR6 262 aa6.85□□□□□ -1.31
VPS53-208ENST00000570650 PPP2R3CQ969Q6 453 aa6.85□□□□□ -1.31
VPS53-208ENST00000570650 IL17RAQ96F46 866 aa6.85□□□□□ -1.31
VPS53-208ENST00000570650 ASIC4Q96FT7 647 aa6.85□□□□□ -1.31
VPS53-208ENST00000570650 IFIH1Q9BYX4 1025 aaKnown RBP6.85□□□□□ -1.31
VPS53-208ENST00000570650 NACAP1Q9BZK3 213 aa6.85□□□□□ -1.31
VPS53-208ENST00000570650 TSPAN10Q9H1Z9 355 aaPredicted RBP6.85□□□□□ -1.31
VPS53-208ENST00000570650 FAM186AA6NE01 2351 aa6.84□□□□□ -1.31
VPS53-208ENST00000570650 USP34Q70CQ2 3546 aa6.84□□□□□ -1.31
VPS53-208ENST00000570650 ATG2AQ2TAZ0 1938 aa6.84□□□□□ -1.31
VPS53-208ENST00000570650 WDR19Q8NEZ3 1342 aa6.84□□□□□ -1.31
VPS53-208ENST00000570650 LOC101059915A0A1B0GWI6 518 aaPredicted RBP6.84□□□□□ -1.31
Retrieved 100 of 20,778 RNA–protein pairs in 19.6 ms