RNA–Protein interactions for RNA: ENST00000570510.6

VPS53-207, Transcript of VPS53, GARP complex subunit, humanhuman

TSL 4

Gene VPS53, Length 570 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53-207ENST00000570510 USTQ9Y2C2 406 aa12.74□□□□□ -0.37
VPS53-207ENST00000570510 HCFC2Q9Y5Z7 792 aa12.74□□□□□ -0.37
VPS53-207ENST00000570510 R4GN57 208 aa12.74□□□□□ -0.37
VPS53-207ENST00000570510 A0A0D9SFI3 127 aa12.73□□□□□ -0.37
VPS53-207ENST00000570510 B4E1Z4 1266 aa12.73□□□□□ -0.37
VPS53-207ENST00000570510 PPP1R11O60927 126 aaPredicted RBP12.73□□□□□ -0.37
VPS53-207ENST00000570510 TDGQ13569 410 aa12.73□□□□□ -0.37
VPS53-207ENST00000570510 MARCH8Q5T0T0 291 aa12.73□□□□□ -0.37
VPS53-207ENST00000570510 C20orf194Q5TEA3 1177 aa12.73□□□□□ -0.37
VPS53-207ENST00000570510 CWF19L1Q69YN2 538 aaKnown RBP12.73□□□□□ -0.37
VPS53-207ENST00000570510 XRRA1Q6P2D8 792 aa12.73□□□□□ -0.37
VPS53-207ENST00000570510 FAM43BQ6ZT52 329 aaPredicted RBP12.73□□□□□ -0.37
VPS53-207ENST00000570510 NME8Q8N427 588 aa12.73□□□□□ -0.37
VPS53-207ENST00000570510 ZBTB10Q96DT7 871 aa12.73□□□□□ -0.37
VPS53-207ENST00000570510 PIGSQ96S52 555 aa12.73□□□□□ -0.37
VPS53-207ENST00000570510 PKD2L1Q9P0L9 805 aa12.73□□□□□ -0.37
VPS53-207ENST00000570510 TELO2Q9Y4R8 837 aa12.73□□□□□ -0.37
VPS53-207ENST00000570510 MYH6P13533 1939 aa12.72□□□□□ -0.37
VPS53-207ENST00000570510 GPR182O15218 404 aa12.72□□□□□ -0.37
VPS53-207ENST00000570510 HOXA2O43364 376 aa12.72□□□□□ -0.37
VPS53-207ENST00000570510 EOMESO95936 686 aa12.72□□□□□ -0.37
VPS53-207ENST00000570510 SDHBP21912 280 aa12.72□□□□□ -0.37
VPS53-207ENST00000570510 PDE4AP27815 886 aa12.72□□□□□ -0.37
VPS53-207ENST00000570510 SEMA3FQ13275 785 aa12.72□□□□□ -0.37
VPS53-207ENST00000570510 RSPO4Q2I0M5 234 aaPredicted RBP12.72□□□□□ -0.37
VPS53-207ENST00000570510 PCNX4Q63HM2 1172 aa12.72□□□□□ -0.37
VPS53-207ENST00000570510 KCNT2Q6UVM3 1135 aa12.72□□□□□ -0.37
VPS53-207ENST00000570510 OTOP3Q7RTS5 596 aa12.72□□□□□ -0.37
VPS53-207ENST00000570510 C12orf76Q8N812 135 aaPredicted RBP12.72□□□□□ -0.37
VPS53-207ENST00000570510 RIN2Q8WYP3 895 aaPredicted RBP12.72□□□□□ -0.37
VPS53-207ENST00000570510 KRT23Q9C075 422 aa12.72□□□□□ -0.37
VPS53-207ENST00000570510 TMX1Q9H3N1 280 aa12.72□□□□□ -0.37
VPS53-207ENST00000570510 ERVK-5Q9HDB9 667 aa12.72□□□□□ -0.37
VPS53-207ENST00000570510 DZANK1Q9NVP4 752 aa12.72□□□□□ -0.37
VPS53-207ENST00000570510 SPG21Q9NZD8 308 aa12.72□□□□□ -0.37
VPS53-207ENST00000570510 ZSWIM5Q9P217 1185 aa12.72□□□□□ -0.37
VPS53-207ENST00000570510 HCSTQ9UBK5 93 aa12.72□□□□□ -0.37
VPS53-207ENST00000570510 PCDHA2Q9Y5H9 948 aa12.72□□□□□ -0.37
VPS53-207ENST00000570510 EP300Q09472 2414 aaPredicted RBP12.72□□□□□ -0.37
VPS53-207ENST00000570510 PLXNA4Q9HCM2 1894 aa12.72□□□□□ -0.37
VPS53-207ENST00000570510 PNMA6FA0A0J9YX94 578 aa12.71□□□□□ -0.37
VPS53-207ENST00000570510 FGFR1P11362 822 aa12.71□□□□□ -0.37
VPS53-207ENST00000570510 NMIQ13287 307 aaPredicted RBP12.71□□□□□ -0.37
VPS53-207ENST00000570510 NONOQ15233 471 aaKnown RBP eCLIP12.71□□□□□ -0.37
VPS53-207ENST00000570510 KIAA1841Q6NSI8 718 aa12.71□□□□□ -0.37
VPS53-207ENST00000570510 ZNF589Q86UQ0 364 aaPredicted RBP12.71□□□□□ -0.37
VPS53-207ENST00000570510 CABP7Q86V35 215 aa12.71□□□□□ -0.37
VPS53-207ENST00000570510 TICAM2Q86XR7 235 aa12.71□□□□□ -0.37
VPS53-207ENST00000570510 MRPL43Q8N983 215 aaKnown RBP12.71□□□□□ -0.37
VPS53-207ENST00000570510 PIBF1Q8WXW3 757 aa12.71□□□□□ -0.37
VPS53-207ENST00000570510 MTMR8Q96EF0 704 aa12.71□□□□□ -0.37
VPS53-207ENST00000570510 RGS18Q9NS28 235 aa12.71□□□□□ -0.37
VPS53-207ENST00000570510 TMEM161AQ9NX61 479 aa12.71□□□□□ -0.37
VPS53-207ENST00000570510 KIAA1671Q9BY89 1806 aa12.71□□□□□ -0.38
VPS53-207ENST00000570510 MYO10Q9HD67 2058 aa12.71□□□□□ -0.38
VPS53-207ENST00000570510 GSTTP1A0A1W2PQM5 241 aa12.7□□□□□ -0.38
VPS53-207ENST00000570510 CXCL14O95715 111 aa12.7□□□□□ -0.38
VPS53-207ENST00000570510 NPR3P17342 541 aa12.7□□□□□ -0.38
VPS53-207ENST00000570510 PBX3P40426 434 aa12.7□□□□□ -0.38
VPS53-207ENST00000570510 HDAC1Q13547 482 aaPredicted RBP12.7□□□□□ -0.38
VPS53-207ENST00000570510 ST3GAL2Q16842 350 aa12.7□□□□□ -0.38
VPS53-207ENST00000570510 IMMTQ16891 758 aaKnown RBP12.7□□□□□ -0.38
VPS53-207ENST00000570510 SPECC1Q5M775 1068 aa12.7□□□□□ -0.38
VPS53-207ENST00000570510 CCDC149Q6ZUS6 474 aa12.7□□□□□ -0.38
VPS53-207ENST00000570510 LRRC43Q8N309 656 aa12.7□□□□□ -0.38
VPS53-207ENST00000570510 RNF169Q8NCN4 708 aa12.7□□□□□ -0.38
VPS53-207ENST00000570510 TRAPPC12Q8WVT3 735 aa12.7□□□□□ -0.38
VPS53-207ENST00000570510 GPRASP2Q96D09 838 aa12.7□□□□□ -0.38
VPS53-207ENST00000570510 CHAMP1Q96JM3 812 aa12.7□□□□□ -0.38
VPS53-207ENST00000570510 TMEM117Q9H0C3 514 aa12.7□□□□□ -0.38
VPS53-207ENST00000570510 CWH43Q9H720 699 aa12.7□□□□□ -0.38
VPS53-207ENST00000570510 CNNM2Q9H8M5 875 aa12.7□□□□□ -0.38
VPS53-207ENST00000570510 DLL3Q9NYJ7 618 aa12.7□□□□□ -0.38
VPS53-207ENST00000570510 MAD2L2Q9UI95 211 aa12.7□□□□□ -0.38
VPS53-207ENST00000570510 ST3GAL5Q9UNP4 418 aa12.7□□□□□ -0.38
VPS53-207ENST00000570510 WDR87Q6ZQQ6 2873 aa12.7□□□□□ -0.38
VPS53-207ENST00000570510 KDM3AQ9Y4C1 1321 aa12.69□□□□□ -0.38
VPS53-207ENST00000570510 DNAH14Q0VDD8 3507 aa12.69□□□□□ -0.38
VPS53-207ENST00000570510 CACNA1GO43497 2377 aa12.69□□□□□ -0.38
VPS53-207ENST00000570510 EPG5Q9HCE0 2579 aa12.69□□□□□ -0.38
VPS53-207ENST00000570510 ZC3H11BA0A1B0GUI2 810 aaPredicted RBP12.69□□□□□ -0.38
VPS53-207ENST00000570510 SMIM35A0A1B0GVV1 85 aa12.69□□□□□ -0.38
VPS53-207ENST00000570510 C2orf71A6NGG8 1288 aa12.69□□□□□ -0.38
VPS53-207ENST00000570510 MGEA5O60502 916 aa12.69□□□□□ -0.38
VPS53-207ENST00000570510 CLASP2O75122 1294 aaKnown RBP12.69□□□□□ -0.38
VPS53-207ENST00000570510 ALDH7A1P49419 539 aaKnown RBP12.69□□□□□ -0.38
VPS53-207ENST00000570510 MTMR1Q13613 665 aa12.69□□□□□ -0.38
VPS53-207ENST00000570510 TMC5Q6UXY8 1006 aa12.69□□□□□ -0.38
VPS53-207ENST00000570510 DCLK2Q8N568 766 aa12.69□□□□□ -0.38
VPS53-207ENST00000570510 SECISBP2LQ93073 1101 aaKnown RBP12.69□□□□□ -0.38
VPS53-207ENST00000570510 RILPL2Q969X0 211 aa12.69□□□□□ -0.38
VPS53-207ENST00000570510 YTHDC1Q96MU7 727 aaKnown RBP12.69□□□□□ -0.38
VPS53-207ENST00000570510 KCNK12Q9HB15 430 aa12.69□□□□□ -0.38
VPS53-207ENST00000570510 NCDNQ9UBB6 729 aa12.69□□□□□ -0.38
VPS53-207ENST00000570510 DUSP12Q9UNI6 340 aa12.69□□□□□ -0.38
VPS53-207ENST00000570510 NOC2LQ9Y3T9 749 aaKnown RBP12.69□□□□□ -0.38
VPS53-207ENST00000570510 NCOR2Q9Y618 2525 aa12.68□□□□□ -0.38
VPS53-207ENST00000570510 FRMPD4Q14CM0 1322 aa12.68□□□□□ -0.38
VPS53-207ENST00000570510 ERICH2A1L162 156 aa12.68□□□□□ -0.38
VPS53-207ENST00000570510 PALM3A6NDB9 673 aaPredicted RBP12.68□□□□□ -0.38
Retrieved 100 of 20,778 RNA–protein pairs in 33.9 ms