RNA–Protein interactions for RNA: ENST00000570062.1

VPS39-213, Transcript of VPS39, HOPS complex subunit, humanhuman

TSL 3

Gene VPS39, Length 842 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS39-213ENST00000570062 CFHP08603 1231 aa8.83□□□□□ -1
VPS39-213ENST00000570062 HOXC6P09630 235 aa8.83□□□□□ -1
VPS39-213ENST00000570062 ERCC3P19447 782 aa8.83□□□□□ -1
VPS39-213ENST00000570062 EDNRBP24530 442 aa8.83□□□□□ -1
VPS39-213ENST00000570062 RPL13P26373 211 aaKnown RBP8.83□□□□□ -1
VPS39-213ENST00000570062 ALDH5A1P51649 535 aaPredicted RBP8.83□□□□□ -1
VPS39-213ENST00000570062 ERVK-9P63128 1117 aa8.83□□□□□ -1
VPS39-213ENST00000570062 ERVK-24P63145 666 aa8.83□□□□□ -1
VPS39-213ENST00000570062 PPP2R3AQ06190 1150 aa8.83□□□□□ -1
VPS39-213ENST00000570062 EHHADHQ08426 723 aa8.83□□□□□ -1
VPS39-213ENST00000570062 DGKZQ13574 1117 aa8.83□□□□□ -1
VPS39-213ENST00000570062 MOGSQ13724 837 aa8.83□□□□□ -1
VPS39-213ENST00000570062 TRIM14Q14142 442 aa8.83□□□□□ -1
VPS39-213ENST00000570062 MYBPC2Q14324 1141 aa8.83□□□□□ -1
VPS39-213ENST00000570062 CCL15Q16663 113 aa8.83□□□□□ -1
VPS39-213ENST00000570062 CDKAL1Q5VV42 579 aa8.83□□□□□ -1
VPS39-213ENST00000570062 SPRYD7Q5W111 196 aa8.83□□□□□ -1
VPS39-213ENST00000570062 KLHL10Q6JEL2 608 aa8.83□□□□□ -1
VPS39-213ENST00000570062 GPAT2Q6NUI2 795 aa8.83□□□□□ -1
VPS39-213ENST00000570062 TRIM67Q6ZTA4 783 aa8.83□□□□□ -1
VPS39-213ENST00000570062 DYMQ7RTS9 669 aa8.83□□□□□ -1
VPS39-213ENST00000570062 MSL3Q8N5Y2 521 aaKnown RBP8.83□□□□□ -1
VPS39-213ENST00000570062 CSGALNACT2Q8N6G5 542 aa8.83□□□□□ -1
VPS39-213ENST00000570062 FAM133AQ8N9E0 248 aa8.83□□□□□ -1
VPS39-213ENST00000570062 CCDC112Q8NEF3 446 aa8.83□□□□□ -1
VPS39-213ENST00000570062 CCDC102AQ96A19 550 aa8.83□□□□□ -1
VPS39-213ENST00000570062 DNAJC19Q96DA6 116 aa8.83□□□□□ -1
VPS39-213ENST00000570062 DYDC2Q96IM9 177 aa8.83□□□□□ -1
VPS39-213ENST00000570062 CEP63Q96MT8 703 aa8.83□□□□□ -1
VPS39-213ENST00000570062 NUDT12Q9BQG2 462 aa8.83□□□□□ -1
VPS39-213ENST00000570062 OLFML3Q9NRN5 406 aa8.83□□□□□ -1
VPS39-213ENST00000570062 IFNKQ9P0W0 207 aa8.83□□□□□ -1
VPS39-213ENST00000570062 BTBD7Q9P203 1132 aa8.83□□□□□ -1
VPS39-213ENST00000570062 LARSQ9P2J5 1176 aaKnown RBP8.83□□□□□ -1
VPS39-213ENST00000570062 CGNQ9P2M7 1197 aaKnown RBP8.83□□□□□ -1
VPS39-213ENST00000570062 RBPJLQ9UBG7 517 aa8.83□□□□□ -1
VPS39-213ENST00000570062 ZKSCAN5Q9Y2L8 839 aa8.83□□□□□ -1
VPS39-213ENST00000570062 UCHL5Q9Y5K5 329 aaKnown RBP eCLIP8.83□□□□□ -13e-7■□□□□ 10.8
VPS39-213ENST00000570062 IVNS1ABPQ9Y6Y0 642 aa8.83□□□□□ -1
VPS39-213ENST00000570062 ATAD5Q96QE3 1844 aa8.82□□□□□ -1
VPS39-213ENST00000570062 PAPPA2Q9BXP8 1791 aa8.82□□□□□ -1
VPS39-213ENST00000570062 ESPNB1AK53 854 aa8.82□□□□□ -1
VPS39-213ENST00000570062 E9PMD0 336 aa8.82□□□□□ -1
VPS39-213ENST00000570062 EML1O00423 815 aa8.82□□□□□ -1
VPS39-213ENST00000570062 EIF3DO15371 548 aaKnown RBP eCLIP8.82□□□□□ -1
VPS39-213ENST00000570062 CCP110O43303 1012 aa8.82□□□□□ -1
VPS39-213ENST00000570062 CALUO43852 315 aaPredicted RBP8.82□□□□□ -1
VPS39-213ENST00000570062 FAM13AO94988 1023 aa8.82□□□□□ -1
VPS39-213ENST00000570062 MAPK4P31152 587 aa8.82□□□□□ -1
VPS39-213ENST00000570062 SLC26A2P50443 739 aa8.82□□□□□ -1
VPS39-213ENST00000570062 UBXN2AP68543 259 aa8.82□□□□□ -1
VPS39-213ENST00000570062 FKBP3Q00688 224 aaKnown RBP8.82□□□□□ -1
VPS39-213ENST00000570062 FMR1Q06787 632 aaKnown RBP eCLIP8.82□□□□□ -1
VPS39-213ENST00000570062 STK4Q13043 487 aa8.82□□□□□ -1
VPS39-213ENST00000570062 GIT2Q14161 759 aa8.82□□□□□ -1
VPS39-213ENST00000570062 EDRF1Q3B7T1 1238 aa8.82□□□□□ -1
VPS39-213ENST00000570062 TCP11X2Q5H9J9 407 aa8.82□□□□□ -1
VPS39-213ENST00000570062 FAM160B1Q5W0V3 765 aa8.82□□□□□ -1
VPS39-213ENST00000570062 SPECC1LQ69YQ0 1117 aa8.82□□□□□ -1
VPS39-213ENST00000570062 MOB2Q70IA6 237 aa8.82□□□□□ -1
VPS39-213ENST00000570062 FAM43AQ8N2R8 423 aa8.82□□□□□ -1
VPS39-213ENST00000570062 ANKLE1Q8NAG6 615 aa8.82□□□□□ -1
VPS39-213ENST00000570062 RETREG2Q8NC44 543 aa8.82□□□□□ -1
VPS39-213ENST00000570062 MORC4Q8TE76 937 aa8.82□□□□□ -1
VPS39-213ENST00000570062 EMID1Q96A84 441 aaPredicted RBP8.82□□□□□ -1
VPS39-213ENST00000570062 CCDC51Q96ER9 411 aa8.82□□□□□ -1
VPS39-213ENST00000570062 HHIPL1Q96JK4 782 aa8.82□□□□□ -1
VPS39-213ENST00000570062 TRIM47Q96LD4 638 aa8.82□□□□□ -1
VPS39-213ENST00000570062 DRC1Q96MC2 740 aa8.82□□□□□ -1
VPS39-213ENST00000570062 LXNQ9BS40 222 aa8.82□□□□□ -1
VPS39-213ENST00000570062 PAGR1Q9BTK6 254 aa8.82□□□□□ -1
VPS39-213ENST00000570062 NUP58Q9BVL2 599 aa8.82□□□□□ -1
VPS39-213ENST00000570062 XPO4Q9C0E2 1151 aaKnown RBP8.82□□□□□ -1
VPS39-213ENST00000570062 BHMT2Q9H2M3 363 aa8.82□□□□□ -1
VPS39-213ENST00000570062 TMEM206Q9H813 350 aa8.82□□□□□ -1
VPS39-213ENST00000570062 PARVGQ9HBI0 331 aa8.82□□□□□ -1
VPS39-213ENST00000570062 JPH1Q9HDC5 661 aaPredicted RBP8.82□□□□□ -1
VPS39-213ENST00000570062 NRBP2Q9NSY0 501 aa8.82□□□□□ -1
VPS39-213ENST00000570062 SLC9A2Q9UBY0 812 aa8.82□□□□□ -1
VPS39-213ENST00000570062 CTNND2Q9UQB3 1225 aa8.82□□□□□ -1
VPS39-213ENST00000570062 ITIH6Q6UXX5 1313 aa8.81□□□□□ -1
VPS39-213ENST00000570062 PHLPP2Q6ZVD8 1323 aa8.81□□□□□ -1
VPS39-213ENST00000570062 DNAJC25-GNG10A0A024R161 153 aa8.81□□□□□ -1
VPS39-213ENST00000570062 A0A1B0GTH6 734 aa8.81□□□□□ -1
VPS39-213ENST00000570062 A0A1W2PQC6 194 aa8.81□□□□□ -1
VPS39-213ENST00000570062 KCNJ18B7U540 433 aa8.81□□□□□ -1
VPS39-213ENST00000570062 PDXKO00764 312 aa8.81□□□□□ -1
VPS39-213ENST00000570062 CHMP2AO43633 222 aa8.81□□□□□ -1
VPS39-213ENST00000570062 CNMDO75829 334 aa8.81□□□□□ -1
VPS39-213ENST00000570062 S1PR4O95977 384 aa8.81□□□□□ -1
VPS39-213ENST00000570062 TUBB4AP04350 444 aa8.81□□□□□ -1
VPS39-213ENST00000570062 KCNA2P16389 499 aa8.81□□□□□ -1
VPS39-213ENST00000570062 DNM2P50570 870 aa8.81□□□□□ -1
VPS39-213ENST00000570062 ZNF131P52739 623 aa8.81□□□□□ -1
VPS39-213ENST00000570062 HUNKP57058 714 aa8.81□□□□□ -1
VPS39-213ENST00000570062 CYP4A11Q02928 519 aa8.81□□□□□ -1
VPS39-213ENST00000570062 SREBF2Q12772 1141 aa8.81□□□□□ -1
VPS39-213ENST00000570062 COASYQ13057 564 aa8.81□□□□□ -1
VPS39-213ENST00000570062 CTTNQ14247 550 aaKnown RBP8.81□□□□□ -1
VPS39-213ENST00000570062 KCNJ12Q14500 433 aa8.81□□□□□ -1
Retrieved 100 of 20,778 RNA–protein pairs in 81.8 ms