RNA–Protein interactions for RNA: ENST00000569336.2

CLN6-209, Transcript of CLN6, transmembrane ER protein, humanhuman

Gene CLN6, Length 557 nt, Biotype retained intron, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN6-209ENST00000569336 PDCP20941 246 aa11.03□□□□□ -0.64
CLN6-209ENST00000569336 DNAJB2P25686 324 aa11.03□□□□□ -0.64
CLN6-209ENST00000569336 U2AF2P26368 475 aaKnown RBP eCLIP11.03□□□□□ -0.64
CLN6-209ENST00000569336 KLRC1P26715 233 aa11.03□□□□□ -0.64
CLN6-209ENST00000569336 TMOD1P28289 359 aa11.03□□□□□ -0.64
CLN6-209ENST00000569336 PSMC5P62195 406 aa11.03□□□□□ -0.64
CLN6-209ENST00000569336 XKR3Q5GH77 459 aa11.03□□□□□ -0.64
CLN6-209ENST00000569336 NCAPH2Q6IBW4 605 aa11.03□□□□□ -0.64
CLN6-209ENST00000569336 TRAF7Q6Q0C0 670 aa11.03□□□□□ -0.64
CLN6-209ENST00000569336 MTHFD1LQ6UB35 978 aa11.03□□□□□ -0.64
CLN6-209ENST00000569336 RUFY4Q6ZNE9 571 aa11.03□□□□□ -0.64
CLN6-209ENST00000569336 FAM43BQ6ZT52 329 aaPredicted RBP11.03□□□□□ -0.64
CLN6-209ENST00000569336 NME8Q8N427 588 aa11.03□□□□□ -0.64
CLN6-209ENST00000569336 USP38Q8NB14 1042 aa11.03□□□□□ -0.64
CLN6-209ENST00000569336 PHOSPHO2Q8TCD6 241 aa11.03□□□□□ -0.64
CLN6-209ENST00000569336 TRAPPC12Q8WVT3 735 aa11.03□□□□□ -0.64
CLN6-209ENST00000569336 DNAJB3Q8WWF6 145 aa11.03□□□□□ -0.64
CLN6-209ENST00000569336 GJA10Q969M2 543 aa11.03□□□□□ -0.64
CLN6-209ENST00000569336 FAM122AQ96E09 287 aa11.03□□□□□ -0.64
CLN6-209ENST00000569336 MAP7D2Q96T17 732 aa11.03□□□□□ -0.64
CLN6-209ENST00000569336 IFIH1Q9BYX4 1025 aaKnown RBP11.03□□□□□ -0.64
CLN6-209ENST00000569336 FAM49AQ9H0Q0 323 aaPredicted RBP11.03□□□□□ -0.64
CLN6-209ENST00000569336 CXXC1Q9P0U4 656 aaPredicted RBP11.03□□□□□ -0.64
CLN6-209ENST00000569336 SEPT9Q9UHD8 586 aaPredicted RBP11.03□□□□□ -0.64
CLN6-209ENST00000569336 RAPGEFL1Q9UHV5 662 aa11.03□□□□□ -0.64
CLN6-209ENST00000569336 MSRAQ9UJ68 235 aa11.03□□□□□ -0.64
CLN6-209ENST00000569336 PCDHA12Q9UN75 941 aa11.03□□□□□ -0.64
CLN6-209ENST00000569336 PLXNA4Q9HCM2 1894 aa11.03□□□□□ -0.64
CLN6-209ENST00000569336 C22orf31O95567 290 aa11.02□□□□□ -0.65
CLN6-209ENST00000569336 ATP4AP20648 1035 aa11.02□□□□□ -0.65
CLN6-209ENST00000569336 QARSP47897 775 aaKnown RBP11.02□□□□□ -0.65
CLN6-209ENST00000569336 WDR5P61964 334 aaKnown RBP11.02□□□□□ -0.65
CLN6-209ENST00000569336 TBC1D8BQ0IIM8 1120 aa11.02□□□□□ -0.65
CLN6-209ENST00000569336 MBTPS1Q14703 1052 aa11.02□□□□□ -0.65
CLN6-209ENST00000569336 UGCGQ16739 394 aa11.02□□□□□ -0.65
CLN6-209ENST00000569336 TMEM266Q2M3C6 531 aa11.02□□□□□ -0.65
CLN6-209ENST00000569336 PLEKHG4Q58EX7 1191 aa11.02□□□□□ -0.65
CLN6-209ENST00000569336 TTC38Q5R3I4 469 aa11.02□□□□□ -0.65
CLN6-209ENST00000569336 ODR4Q5SWX8 454 aa11.02□□□□□ -0.65
CLN6-209ENST00000569336 MCTP1Q6DN14 999 aa11.02□□□□□ -0.65
CLN6-209ENST00000569336 EXOC8Q8IYI6 725 aa11.02□□□□□ -0.65
CLN6-209ENST00000569336 HAS1Q92839 578 aa11.02□□□□□ -0.65
CLN6-209ENST00000569336 VWCEQ96DN2 955 aa11.02□□□□□ -0.65
CLN6-209ENST00000569336 FAM161BQ96MY7 647 aa11.02□□□□□ -0.65
CLN6-209ENST00000569336 JPH2Q9BR39 696 aaPredicted RBP11.02□□□□□ -0.65
CLN6-209ENST00000569336 TTC12Q9H892 705 aaPredicted RBP11.02□□□□□ -0.65
CLN6-209ENST00000569336 PPME1Q9Y570 386 aa11.02□□□□□ -0.65
CLN6-209ENST00000569336 PCDHA11Q9Y5I1 949 aa11.02□□□□□ -0.65
CLN6-209ENST00000569336 TRPV2Q9Y5S1 764 aa11.02□□□□□ -0.65
CLN6-209ENST00000569336 CDY2AQ9Y6F7 541 aa11.02□□□□□ -0.65
CLN6-209ENST00000569336 SQORQ9Y6N5 450 aa11.02□□□□□ -0.65
CLN6-209ENST00000569336 KDM3AQ9Y4C1 1321 aa11.02□□□□□ -0.65
CLN6-209ENST00000569336 PDCD11Q14690 1871 aaKnown RBP11.02□□□□□ -0.65
CLN6-209ENST00000569336 BRWD1Q9NSI6 2320 aa11.01□□□□□ -0.65
CLN6-209ENST00000569336 ZBTB42B2RXF5 422 aa11.01□□□□□ -0.65
CLN6-209ENST00000569336 KIF28PB7ZC32 967 aa11.01□□□□□ -0.65
CLN6-209ENST00000569336 K7ELQ4 463 aaPredicted RBP11.01□□□□□ -0.65
CLN6-209ENST00000569336 LAD1O00515 517 aa11.01□□□□□ -0.65
CLN6-209ENST00000569336 ZNF862O60290 1169 aa11.01□□□□□ -0.65
CLN6-209ENST00000569336 CHRNA1P02708 482 aa11.01□□□□□ -0.65
CLN6-209ENST00000569336 AMHP03971 560 aa11.01□□□□□ -0.65
CLN6-209ENST00000569336 P4HBP07237 508 aaKnown RBP11.01□□□□□ -0.65
CLN6-209ENST00000569336 OR52Z1P0C646 297 aa11.01□□□□□ -0.65
CLN6-209ENST00000569336 ATP2B1P20020 1258 aa11.01□□□□□ -0.65
CLN6-209ENST00000569336 MCM7P33993 719 aa11.01□□□□□ -0.65
CLN6-209ENST00000569336 SPIRE1Q08AE8 756 aa11.01□□□□□ -0.65
CLN6-209ENST00000569336 MGAT3Q09327 533 aa11.01□□□□□ -0.65
CLN6-209ENST00000569336 CUL4AQ13619 759 aa11.01□□□□□ -0.65
CLN6-209ENST00000569336 EPHA7Q15375 998 aa11.01□□□□□ -0.65
CLN6-209ENST00000569336 TSHZ1Q6ZSZ6 1077 aa11.01□□□□□ -0.65
CLN6-209ENST00000569336 TRMT1LQ7Z2T5 733 aaKnown RBP11.01□□□□□ -0.65
CLN6-209ENST00000569336 METTL13Q8N6R0 699 aa11.01□□□□□ -0.65
CLN6-209ENST00000569336 BANK1Q8NDB2 785 aa11.01□□□□□ -0.65
CLN6-209ENST00000569336 TIFAQ96CG3 184 aa11.01□□□□□ -0.65
CLN6-209ENST00000569336 CCDC43Q96MW1 224 aaKnown RBP11.01□□□□□ -0.65
CLN6-209ENST00000569336 LXNQ9BS40 222 aa11.01□□□□□ -0.65
CLN6-209ENST00000569336 RAB34Q9BZG1 259 aa11.01□□□□□ -0.65
CLN6-209ENST00000569336 PRRC2BQ5JSZ5 2229 aaKnown RBP11.01□□□□□ -0.65
CLN6-209ENST00000569336 EML1O00423 815 aa11□□□□□ -0.65
CLN6-209ENST00000569336 GHRP10912 638 aa11□□□□□ -0.65
CLN6-209ENST00000569336 TXKP42681 527 aa11□□□□□ -0.65
CLN6-209ENST00000569336 DNM2P50570 870 aa11□□□□□ -0.65
CLN6-209ENST00000569336 PAK2Q13177 524 aa11□□□□□ -0.65
CLN6-209ENST00000569336 GPNMBQ14956 572 aa11□□□□□ -0.65
CLN6-209ENST00000569336 MTERF2Q49AM1 385 aa11□□□□□ -0.65
CLN6-209ENST00000569336 RILPL1Q5EBL4 403 aa11□□□□□ -0.65
CLN6-209ENST00000569336 FBXO47Q5MNV8 452 aa11□□□□□ -0.65
CLN6-209ENST00000569336 HAUS3Q68CZ6 603 aa11□□□□□ -0.65
CLN6-209ENST00000569336 OTUD6AQ7L8S5 288 aa11□□□□□ -0.65
CLN6-209ENST00000569336 HERC6Q8IVU3 1022 aa11□□□□□ -0.65
CLN6-209ENST00000569336 DBF4BQ8NFT6 615 aa11□□□□□ -0.65
CLN6-209ENST00000569336 ERMNQ8TAM6 284 aa11□□□□□ -0.65
CLN6-209ENST00000569336 SLC7A3Q8WY07 619 aa11□□□□□ -0.65
CLN6-209ENST00000569336 INTS4Q96HW7 963 aaKnown RBP11□□□□□ -0.65
CLN6-209ENST00000569336 MTMR9Q96QG7 549 aa11□□□□□ -0.65
CLN6-209ENST00000569336 FTHL17Q9BXU8 183 aa11□□□□□ -0.65
CLN6-209ENST00000569336 NIFKQ9BYG3 293 aaKnown RBP11□□□□□ -0.65
CLN6-209ENST00000569336 PBX4Q9BYU1 374 aa11□□□□□ -0.65
CLN6-209ENST00000569336 CELF4Q9BZC1 486 aaKnown RBP11□□□□□ -0.65
CLN6-209ENST00000569336 ZSWIM4Q9H7M6 989 aa11□□□□□ -0.65
Retrieved 100 of 20,778 RNA–protein pairs in 41.2 ms