RNA–Protein interactions for RNA: ENST00000567992.1

CLK3-220, Transcript of CDC like kinase 3, humanhuman

TSL 2

Gene CLK3, Length 603 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLK3-220ENST00000567992 HSCBQ8IWL3 235 aa11.01□□□□□ -0.65
CLK3-220ENST00000567992 CKAP2LQ8IYA6 745 aa11.01□□□□□ -0.65
CLK3-220ENST00000567992 RPUSD2Q8IZ73 545 aaKnown RBP11.01□□□□□ -0.65
CLK3-220ENST00000567992 TNPO1Q92973 898 aaKnown RBP11.01□□□□□ -0.65
CLK3-220ENST00000567992 LRCH3Q96II8 777 aa11.01□□□□□ -0.65
CLK3-220ENST00000567992 DYDC2Q96IM9 177 aa11.01□□□□□ -0.65
CLK3-220ENST00000567992 HSD17B14Q9BPX1 270 aa11.01□□□□□ -0.65
CLK3-220ENST00000567992 LXNQ9BS40 222 aa11.01□□□□□ -0.65
CLK3-220ENST00000567992 NIFKQ9BYG3 293 aaKnown RBP11.01□□□□□ -0.65
CLK3-220ENST00000567992 FAM49AQ9H0Q0 323 aaPredicted RBP11.01□□□□□ -0.65
CLK3-220ENST00000567992 RGL1Q9NZL6 768 aa11.01□□□□□ -0.65
CLK3-220ENST00000567992 SEPT9Q9UHD8 586 aaPredicted RBP11.01□□□□□ -0.65
CLK3-220ENST00000567992 PCDHA12Q9UN75 941 aa11.01□□□□□ -0.65
CLK3-220ENST00000567992 CEP131Q9UPN4 1083 aa11.01□□□□□ -0.65
CLK3-220ENST00000567992 TRANK1O15050 2925 aa11.01□□□□□ -0.65
CLK3-220ENST00000567992 VPS37CA5D8V6 355 aaPredicted RBP11□□□□□ -0.65
CLK3-220ENST00000567992 MARCH6O60337 910 aa11□□□□□ -0.65
CLK3-220ENST00000567992 SLITRK3O94933 977 aa11□□□□□ -0.65
CLK3-220ENST00000567992 PARNO95453 639 aaKnown RBP11□□□□□ -0.65
CLK3-220ENST00000567992 FGBP02675 491 aa11□□□□□ -0.65
CLK3-220ENST00000567992 P4HBP07237 508 aaKnown RBP11□□□□□ -0.65
CLK3-220ENST00000567992 PDCP20941 246 aa11□□□□□ -0.65
CLK3-220ENST00000567992 FXR2P51116 673 aaKnown RBP eCLIP11□□□□□ -0.65
CLK3-220ENST00000567992 MRPS6P82932 125 aaKnown RBP11□□□□□ -0.65
CLK3-220ENST00000567992 CYP4A11Q02928 519 aa11□□□□□ -0.65
CLK3-220ENST00000567992 TMEM62Q0P6H9 643 aa11□□□□□ -0.65
CLK3-220ENST00000567992 RESTQ13127 1097 aa11□□□□□ -0.65
CLK3-220ENST00000567992 PTGDRQ13258 359 aa11□□□□□ -0.65
CLK3-220ENST00000567992 CTTNQ14247 550 aaKnown RBP11□□□□□ -0.65
CLK3-220ENST00000567992 IL17AQ16552 155 aa11□□□□□ -0.65
CLK3-220ENST00000567992 RILPL1Q5EBL4 403 aa11□□□□□ -0.65
CLK3-220ENST00000567992 XKR3Q5GH77 459 aa11□□□□□ -0.65
CLK3-220ENST00000567992 PLA2G4FQ68DD2 849 aa11□□□□□ -0.65
CLK3-220ENST00000567992 OTOP2Q7RTS6 562 aa11□□□□□ -0.65
CLK3-220ENST00000567992 FERMT3Q86UX7 667 aa11□□□□□ -0.65
CLK3-220ENST00000567992 C4orf19Q8IY42 314 aa11□□□□□ -0.65
CLK3-220ENST00000567992 KIAA0319LQ8IZA0 1049 aa11□□□□□ -0.65
CLK3-220ENST00000567992 ZNF579Q8NAF0 562 aaKnown RBP11□□□□□ -0.65
CLK3-220ENST00000567992 EIF2AK1Q9BQI3 630 aaKnown RBP11□□□□□ -0.65
CLK3-220ENST00000567992 SH2D3AQ9BRG2 576 aa11□□□□□ -0.65
CLK3-220ENST00000567992 MTMR6Q9Y217 621 aa11□□□□□ -0.65
CLK3-220ENST00000567992 CDY2AQ9Y6F7 541 aa11□□□□□ -0.65
CLK3-220ENST00000567992 IGKV6-21A0A0C4DH24 114 aa10.99□□□□□ -0.65
CLK3-220ENST00000567992 ZBTB39O15060 712 aa10.99□□□□□ -0.65
CLK3-220ENST00000567992 LYPLA2O95372 231 aa10.99□□□□□ -0.65
CLK3-220ENST00000567992 RPLP2P05387 115 aaKnown RBP10.99□□□□□ -0.65
CLK3-220ENST00000567992 SPATA31C1P0DKV0 1188 aa10.99□□□□□ -0.65
CLK3-220ENST00000567992 TECP42680 631 aa10.99□□□□□ -0.65
CLK3-220ENST00000567992 CLCN3P51790 818 aa10.99□□□□□ -0.65
CLK3-220ENST00000567992 ATP2C1P98194 919 aaPredicted RBP10.99□□□□□ -0.65
CLK3-220ENST00000567992 DRP2Q13474 957 aa10.99□□□□□ -0.65
CLK3-220ENST00000567992 LPIN1Q14693 890 aa10.99□□□□□ -0.65
CLK3-220ENST00000567992 MTERF2Q49AM1 385 aa10.99□□□□□ -0.65
CLK3-220ENST00000567992 PLEKHG4Q58EX7 1191 aa10.99□□□□□ -0.65
CLK3-220ENST00000567992 FBXO47Q5MNV8 452 aa10.99□□□□□ -0.65
CLK3-220ENST00000567992 CNKSR3Q6P9H4 555 aa10.99□□□□□ -0.65
CLK3-220ENST00000567992 BRAPQ7Z569 592 aa10.99□□□□□ -0.65
CLK3-220ENST00000567992 LRRC71Q8N4P6 559 aa10.99□□□□□ -0.65
CLK3-220ENST00000567992 NEK9Q8TD19 979 aa10.99□□□□□ -0.65
CLK3-220ENST00000567992 ZSWIM4Q9H7M6 989 aa10.99□□□□□ -0.65
CLK3-220ENST00000567992 NRBP2Q9NSY0 501 aa10.99□□□□□ -0.65
CLK3-220ENST00000567992 TRPV2Q9Y5S1 764 aa10.99□□□□□ -0.65
CLK3-220ENST00000567992 KDM3AQ9Y4C1 1321 aa10.99□□□□□ -0.65
CLK3-220ENST00000567992 GRXCR1A8MXD5 290 aa10.98□□□□□ -0.65
CLK3-220ENST00000567992 LAD1O00515 517 aa10.98□□□□□ -0.65
CLK3-220ENST00000567992 MAGEB2O15479 319 aa10.98□□□□□ -0.65
CLK3-220ENST00000567992 MAFO75444 373 aaPredicted RBP10.98□□□□□ -0.65
CLK3-220ENST00000567992 MED24O75448 989 aa10.98□□□□□ -0.65
CLK3-220ENST00000567992 BAIAP3O94812 1187 aa10.98□□□□□ -0.65
CLK3-220ENST00000567992 GHRP10912 638 aa10.98□□□□□ -0.65
CLK3-220ENST00000567992 YWHABP31946 246 aaKnown RBP10.98□□□□□ -0.65
CLK3-220ENST00000567992 PRPHP41219 470 aa10.98□□□□□ -0.65
CLK3-220ENST00000567992 NPEPPSP55786 919 aa10.98□□□□□ -0.65
CLK3-220ENST00000567992 WDR5P61964 334 aaKnown RBP10.98□□□□□ -0.65
CLK3-220ENST00000567992 RSPH3Q86UC2 560 aa10.98□□□□□ -0.65
CLK3-220ENST00000567992 NME8Q8N427 588 aa10.98□□□□□ -0.65
CLK3-220ENST00000567992 IGSF22Q8N9C0 903 aa10.98□□□□□ -0.65
CLK3-220ENST00000567992 DBF4BQ8NFT6 615 aa10.98□□□□□ -0.65
CLK3-220ENST00000567992 FTOQ9C0B1 505 aaKnown RBP eCLIP10.98□□□□□ -0.65
CLK3-220ENST00000567992 AGO3Q9H9G7 860 aaKnown RBP10.98□□□□□ -0.65
CLK3-220ENST00000567992 CDHR5Q9HBB8 845 aa10.98□□□□□ -0.65
CLK3-220ENST00000567992 CYP26B1Q9NR63 512 aa10.98□□□□□ -0.65
CLK3-220ENST00000567992 COL4A6Q14031 1691 aa10.98□□□□□ -0.65
CLK3-220ENST00000567992 DDX11L8A8MPP1 907 aa10.97□□□□□ -0.65
CLK3-220ENST00000567992 STX6O43752 255 aa10.97□□□□□ -0.65
CLK3-220ENST00000567992 DKC1O60832 514 aaKnown RBP eCLIP10.97□□□□□ -0.65
CLK3-220ENST00000567992 GPR32O75388 356 aa10.97□□□□□ -0.65
CLK3-220ENST00000567992 VTNP04004 478 aa10.97□□□□□ -0.65
CLK3-220ENST00000567992 ACTN1P12814 892 aa10.97□□□□□ -0.65
CLK3-220ENST00000567992 DEFB103AP81534 67 aa10.97□□□□□ -0.65
CLK3-220ENST00000567992 SMAD3P84022 425 aaKnown RBP10.97□□□□□ -0.65
CLK3-220ENST00000567992 TBC1D8BQ0IIM8 1120 aa10.97□□□□□ -0.65
CLK3-220ENST00000567992 IER5Q5VY09 327 aa10.97□□□□□ -0.65
CLK3-220ENST00000567992 EFCAB12Q6NXP0 572 aa10.97□□□□□ -0.65
CLK3-220ENST00000567992 FAM173BQ6P4H8 233 aa10.97□□□□□ -0.65
CLK3-220ENST00000567992 POTEGQ6S5H5 508 aa10.97□□□□□ -0.65
CLK3-220ENST00000567992 CATSPER3Q86XQ3 398 aa10.97□□□□□ -0.65
CLK3-220ENST00000567992 TPH2Q8IWU9 490 aa10.97□□□□□ -0.65
CLK3-220ENST00000567992 METTL13Q8N6R0 699 aa10.97□□□□□ -0.65
CLK3-220ENST00000567992 TMEM40Q8WWA1 233 aa10.97□□□□□ -0.65
Retrieved 100 of 20,778 RNA–protein pairs in 19.4 ms