RNA–Protein interactions for RNA: ENST00000564468.5

CLK3-216, Transcript of CDC like kinase 3, humanhuman

TSL 3

Gene CLK3, Length 929 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLK3-216ENST00000564468 GUCY1B3Q02153 619 aa15.07■□□□□ 0
CLK3-216ENST00000564468 PPP2R5CQ13362 524 aa15.07■□□□□ 0
CLK3-216ENST00000564468 EARS2Q5JPH6 523 aaKnown RBP15.07■□□□□ 0
CLK3-216ENST00000564468 FAM43BQ6ZT52 329 aaPredicted RBP15.07■□□□□ 0
CLK3-216ENST00000564468 ZNF710Q8N1W2 664 aa15.07■□□□□ 0
CLK3-216ENST00000564468 USP38Q8NB14 1042 aa15.07■□□□□ 0
CLK3-216ENST00000564468 DBF4BQ8NFT6 615 aa15.07■□□□□ 0
CLK3-216ENST00000564468 TRAPPC12Q8WVT3 735 aa15.07■□□□□ 0
CLK3-216ENST00000564468 ATXN2LQ8WWM7 1075 aaKnown RBP15.07■□□□□ 0
CLK3-216ENST00000564468 FAM49AQ9H0Q0 323 aaPredicted RBP15.07■□□□□ 0
CLK3-216ENST00000564468 SLC28A3Q9HAS3 691 aa15.07■□□□□ 0
CLK3-216ENST00000564468 ZSCAN21Q9Y5A6 473 aaPredicted RBP15.07■□□□□ 0
CLK3-216ENST00000564468 CDY2AQ9Y6F7 541 aa15.07■□□□□ 0
CLK3-216ENST00000564468 CHRNA1P02708 482 aa15.06■□□□□ 0
CLK3-216ENST00000564468 TMOD1P28289 359 aa15.06■□□□□ 0
CLK3-216ENST00000564468 WDR5P61964 334 aaKnown RBP15.06■□□□□ 0
CLK3-216ENST00000564468 PSMC5P62195 406 aa15.06■□□□□ 0
CLK3-216ENST00000564468 PRKCEQ02156 737 aa15.06■□□□□ 0
CLK3-216ENST00000564468 MGAT3Q09327 533 aa15.06■□□□□ 0
CLK3-216ENST00000564468 ORC2Q13416 577 aaPredicted RBP15.06■□□□□ 0
CLK3-216ENST00000564468 CALCRLQ16602 461 aa15.06■□□□□ 0
CLK3-216ENST00000564468 XKR3Q5GH77 459 aa15.06■□□□□ 0
CLK3-216ENST00000564468 POTEDQ86YR6 584 aa15.06■□□□□ 0
CLK3-216ENST00000564468 GJA10Q969M2 543 aa15.06■□□□□ 0
CLK3-216ENST00000564468 IFIH1Q9BYX4 1025 aaKnown RBP15.06■□□□□ 0
CLK3-216ENST00000564468 TRPV2Q9Y5S1 764 aa15.06■□□□□ 0
CLK3-216ENST00000564468 FAM205CA6NFA0 338 aa15.05■□□□□ -0
CLK3-216ENST00000564468 ZNF862O60290 1169 aa15.05■□□□□ -0
CLK3-216ENST00000564468 NEMFO60524 1076 aa15.05■□□□□ -0
CLK3-216ENST00000564468 AMHP03971 560 aa15.05■□□□□ -0
CLK3-216ENST00000564468 ODR4Q5SWX8 454 aa15.05■□□□□ -0
CLK3-216ENST00000564468 TRMT1LQ7Z2T5 733 aaKnown RBP15.05■□□□□ -0
CLK3-216ENST00000564468 HERC6Q8IVU3 1022 aa15.05■□□□□ -0
CLK3-216ENST00000564468 HAS1Q92839 578 aa15.05■□□□□ -0
CLK3-216ENST00000564468 ZBED2Q9BTP6 218 aa15.05■□□□□ -0
CLK3-216ENST00000564468 CELF4Q9BZC1 486 aaKnown RBP15.05■□□□□ -0
CLK3-216ENST00000564468 NOL7Q9UMY1 257 aaKnown RBP15.05■□□□□ -0
CLK3-216ENST00000564468 PCDHA12Q9UN75 941 aa15.05■□□□□ -0
CLK3-216ENST00000564468 KDM3AQ9Y4C1 1321 aa15.05■□□□□ -0
CLK3-216ENST00000564468 NCOR1O75376 2440 aa15.04■□□□□ -0
CLK3-216ENST00000564468 TTC3P53804 2025 aa15.04■□□□□ -0
CLK3-216ENST00000564468 ZBTB42B2RXF5 422 aa15.04■□□□□ -0
CLK3-216ENST00000564468 P4HBP07237 508 aaKnown RBP15.04■□□□□ -0
CLK3-216ENST00000564468 GHRP10912 638 aa15.04■□□□□ -0
CLK3-216ENST00000564468 PBX2P40425 430 aa15.04■□□□□ -0
CLK3-216ENST00000564468 QARSP47897 775 aaKnown RBP15.04■□□□□ -0
CLK3-216ENST00000564468 TRAPPC10P48553 1259 aa15.04■□□□□ -0
CLK3-216ENST00000564468 TBC1D8BQ0IIM8 1120 aa15.04■□□□□ -0
CLK3-216ENST00000564468 EPHA7Q15375 998 aa15.04■□□□□ -0
CLK3-216ENST00000564468 FBXO47Q5MNV8 452 aa15.04■□□□□ -0
CLK3-216ENST00000564468 TSHZ1Q6ZSZ6 1077 aa15.04■□□□□ -0
CLK3-216ENST00000564468 NOSTRINQ8IVI9 506 aa15.04■□□□□ -0
CLK3-216ENST00000564468 EXOC8Q8IYI6 725 aa15.04■□□□□ -0
CLK3-216ENST00000564468 METTL13Q8N6R0 699 aa15.04■□□□□ -0
CLK3-216ENST00000564468 MAP7D2Q96T17 732 aa15.04■□□□□ -0
CLK3-216ENST00000564468 JPH2Q9BR39 696 aaPredicted RBP15.04■□□□□ -0
CLK3-216ENST00000564468 NIFKQ9BYG3 293 aaKnown RBP15.04■□□□□ -0
CLK3-216ENST00000564468 VAV3Q9UKW4 847 aa15.04■□□□□ -0
CLK3-216ENST00000564468 SMC3Q9UQE7 1217 aa15.04■□□□□ -0
CLK3-216ENST00000564468 TLL1O43897 1013 aa15.03■□□□□ -0
CLK3-216ENST00000564468 C22orf31O95567 290 aa15.03■□□□□ -0
CLK3-216ENST00000564468 RABGGTBP53611 331 aa15.03■□□□□ -0
CLK3-216ENST00000564468 LPIN1Q14693 890 aa15.03■□□□□ -0
CLK3-216ENST00000564468 UGCGQ16739 394 aa15.03■□□□□ -0
CLK3-216ENST00000564468 PPP2R2DQ66LE6 453 aa15.03■□□□□ -0
CLK3-216ENST00000564468 NCAPH2Q6IBW4 605 aa15.03■□□□□ -0
CLK3-216ENST00000564468 EFCAB12Q6NXP0 572 aa15.03■□□□□ -0
CLK3-216ENST00000564468 KIAA0319LQ8IZA0 1049 aa15.03■□□□□ -0
CLK3-216ENST00000564468 PPM1EQ8WY54 764 aa15.03■□□□□ -0
CLK3-216ENST00000564468 ZBTB10Q96DT7 871 aa15.03■□□□□ -0
CLK3-216ENST00000564468 FTHL17Q9BXU8 183 aa15.03■□□□□ -0
CLK3-216ENST00000564468 TSPYL2Q9H2G4 693 aaPredicted RBP15.03■□□□□ -0
CLK3-216ENST00000564468 NKX2-4Q9H2Z4 354 aa15.03■□□□□ -0
CLK3-216ENST00000564468 THEGQ9P2T0 379 aa15.03■□□□□ -0
CLK3-216ENST00000564468 SEPT9Q9UHD8 586 aaPredicted RBP15.03■□□□□ -0
CLK3-216ENST00000564468 PPME1Q9Y570 386 aa15.03■□□□□ -0
CLK3-216ENST00000564468 DDX11L8A8MPP1 907 aa15.02■□□□□ -0
CLK3-216ENST00000564468 H3BQV1 296 aa15.02■□□□□ -0
CLK3-216ENST00000564468 EML1O00423 815 aa15.02■□□□□ -0
CLK3-216ENST00000564468 GJB5O95377 273 aa15.02■□□□□ -0
CLK3-216ENST00000564468 CD2BP2O95400 341 aaKnown RBP15.02■□□□□ -0
CLK3-216ENST00000564468 ATP2B1P20020 1258 aa15.02■□□□□ -0
CLK3-216ENST00000564468 U2AF2P26368 475 aaKnown RBP eCLIP15.02■□□□□ -0
CLK3-216ENST00000564468 GJB2P29033 226 aa15.02■□□□□ -0
CLK3-216ENST00000564468 MCM7P33993 719 aa15.02■□□□□ -0
CLK3-216ENST00000564468 DNM2P50570 870 aa15.02■□□□□ -0
CLK3-216ENST00000564468 DEFB103AP81534 67 aa15.02■□□□□ -0
CLK3-216ENST00000564468 MRPS5P82675 430 aaKnown RBP15.02■□□□□ -0
CLK3-216ENST00000564468 CDC42EP1Q00587 391 aa15.02■□□□□ -0
CLK3-216ENST00000564468 TMEM62Q0P6H9 643 aa15.02■□□□□ -0
CLK3-216ENST00000564468 OTUD6AQ7L8S5 288 aa15.02■□□□□ -0
CLK3-216ENST00000564468 C4orf19Q8IY42 314 aa15.02■□□□□ -0
CLK3-216ENST00000564468 MYOCDQ8IZQ8 938 aa15.02■□□□□ -0
CLK3-216ENST00000564468 BANK1Q8NDB2 785 aa15.02■□□□□ -0
CLK3-216ENST00000564468 NEK9Q8TD19 979 aa15.02■□□□□ -0
CLK3-216ENST00000564468 ASB2Q96Q27 587 aa15.02■□□□□ -0
CLK3-216ENST00000564468 RAD9AQ99638 391 aa15.02■□□□□ -0
CLK3-216ENST00000564468 ZSWIM4Q9H7M6 989 aa15.02■□□□□ -0
CLK3-216ENST00000564468 TTC12Q9H892 705 aaPredicted RBP15.02■□□□□ -0
CLK3-216ENST00000564468 AKT3Q9Y243 479 aa15.02■□□□□ -0
Retrieved 100 of 20,778 RNA–protein pairs in 30.1 ms