RNA–Protein interactions for RNA: ENST00000564096.1

CLK3-214, Transcript of CDC like kinase 3, humanhuman

TSL 2

Gene CLK3, Length 805 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLK3-214ENST00000564096 ADCY6O43306 1168 aa14.24□□□□□ -0.13
CLK3-214ENST00000564096 ZNF862O60290 1169 aa14.24□□□□□ -0.13
CLK3-214ENST00000564096 USO1O60763 962 aaKnown RBP14.24□□□□□ -0.13
CLK3-214ENST00000564096 DGAT1O75907 488 aa14.24□□□□□ -0.13
CLK3-214ENST00000564096 C6orf222P0C671 652 aaPredicted RBP14.24□□□□□ -0.13
CLK3-214ENST00000564096 IDEP14735 1019 aa14.24□□□□□ -0.13
CLK3-214ENST00000564096 GAP43P17677 238 aa14.24□□□□□ -0.13
CLK3-214ENST00000564096 GUCY2CP25092 1073 aa14.24□□□□□ -0.13
CLK3-214ENST00000564096 MARK3P27448 753 aa14.24□□□□□ -0.13
CLK3-214ENST00000564096 RFC5P40937 340 aa14.24□□□□□ -0.13
CLK3-214ENST00000564096 CTCFP49711 727 aaPredicted RBP14.24□□□□□ -0.13
CLK3-214ENST00000564096 FSCN1Q16658 493 aaKnown RBP14.24□□□□□ -0.13
CLK3-214ENST00000564096 PLA2G4FQ68DD2 849 aa14.24□□□□□ -0.13
CLK3-214ENST00000564096 ANO5Q75V66 913 aa14.24□□□□□ -0.13
CLK3-214ENST00000564096 DYMQ7RTS9 669 aa14.24□□□□□ -0.13
CLK3-214ENST00000564096 TRIM50Q86XT4 487 aa14.24□□□□□ -0.13
CLK3-214ENST00000564096 TNS4Q8IZW8 715 aa14.24□□□□□ -0.13
CLK3-214ENST00000564096 MCPH1Q8NEM0 835 aa14.24□□□□□ -0.13
CLK3-214ENST00000564096 SPATA20Q8TB22 786 aa14.24□□□□□ -0.13
CLK3-214ENST00000564096 SLC7A3Q8WY07 619 aa14.24□□□□□ -0.13
CLK3-214ENST00000564096 ERCC4Q92889 916 aaPredicted RBP14.24□□□□□ -0.13
CLK3-214ENST00000564096 LENG1Q96BZ8 264 aaPredicted RBP14.24□□□□□ -0.13
CLK3-214ENST00000564096 DRC1Q96MC2 740 aa14.24□□□□□ -0.13
CLK3-214ENST00000564096 PCYT2Q99447 389 aa14.24□□□□□ -0.13
CLK3-214ENST00000564096 JPH2Q9BR39 696 aaPredicted RBP14.24□□□□□ -0.13
CLK3-214ENST00000564096 RUSC1Q9BVN2 902 aa14.24□□□□□ -0.13
CLK3-214ENST00000564096 UPF3AQ9H1J1 476 aaKnown RBP14.24□□□□□ -0.13
CLK3-214ENST00000564096 ATP6V0A4Q9HBG4 840 aa14.24□□□□□ -0.13
CLK3-214ENST00000564096 XPNPEP3Q9NQH7 507 aa14.24□□□□□ -0.13
CLK3-214ENST00000564096 CYP26B1Q9NR63 512 aa14.24□□□□□ -0.13
CLK3-214ENST00000564096 DDX20Q9UHI6 824 aaKnown RBP14.24□□□□□ -0.13
CLK3-214ENST00000564096 MAN1B1Q9UKM7 699 aa14.24□□□□□ -0.13
CLK3-214ENST00000564096 PTPN22Q9Y2R2 807 aa14.24□□□□□ -0.13
CLK3-214ENST00000564096 TELO2Q9Y4R8 837 aa14.24□□□□□ -0.13
CLK3-214ENST00000564096 BIN1O00499 593 aa14.23□□□□□ -0.13
CLK3-214ENST00000564096 GAS2O43903 313 aaKnown RBP14.23□□□□□ -0.13
CLK3-214ENST00000564096 HBP1O60381 514 aa14.23□□□□□ -0.13
CLK3-214ENST00000564096 FAM13AO94988 1023 aa14.23□□□□□ -0.13
CLK3-214ENST00000564096 ZNF286BP0CG31 522 aa14.23□□□□□ -0.13
CLK3-214ENST00000564096 HSPA8P11142 646 aaKnown RBP14.23□□□□□ -0.13
CLK3-214ENST00000564096 PPP1R2P41236 205 aa14.23□□□□□ -0.13
CLK3-214ENST00000564096 SARSP49591 514 aaKnown RBP14.23□□□□□ -0.13
CLK3-214ENST00000564096 POLGP54098 1239 aaPredicted RBP14.23□□□□□ -0.13
CLK3-214ENST00000564096 GJA9P57773 515 aa14.23□□□□□ -0.13
CLK3-214ENST00000564096 NLRP12P59046 1061 aa14.23□□□□□ -0.13
CLK3-214ENST00000564096 TRIM32Q13049 653 aa14.23□□□□□ -0.13
CLK3-214ENST00000564096 STIM1Q13586 685 aa14.23□□□□□ -0.13
CLK3-214ENST00000564096 MTERF2Q49AM1 385 aa14.23□□□□□ -0.13
CLK3-214ENST00000564096 SLC9C1Q4G0N8 1177 aa14.23□□□□□ -0.13
CLK3-214ENST00000564096 TMEM63BQ5T3F8 832 aa14.23□□□□□ -0.13
CLK3-214ENST00000564096 RINT1Q6NUQ1 792 aa14.23□□□□□ -0.13
CLK3-214ENST00000564096 TRMT1LQ7Z2T5 733 aaKnown RBP14.23□□□□□ -0.13
CLK3-214ENST00000564096 CTU1Q7Z7A3 348 aaKnown RBP14.23□□□□□ -0.13
CLK3-214ENST00000564096 REEP2Q9BRK0 252 aa14.23□□□□□ -0.13
CLK3-214ENST00000564096 NIFKQ9BYG3 293 aaKnown RBP14.23□□□□□ -0.13
CLK3-214ENST00000564096 HMX1Q9NP08 348 aaPredicted RBP14.23□□□□□ -0.13
CLK3-214ENST00000564096 COL4A3BPQ9Y5P4 624 aa14.23□□□□□ -0.13
CLK3-214ENST00000564096 COL1A2P08123 1366 aa14.22□□□□□ -0.13
CLK3-214ENST00000564096 DOCK3Q8IZD9 2030 aa14.22□□□□□ -0.13
CLK3-214ENST00000564096 H3BRB1 525 aa14.22□□□□□ -0.13
CLK3-214ENST00000564096 RHOBTB3O94955 611 aa14.22□□□□□ -0.13
CLK3-214ENST00000564096 KIF20AO95235 890 aa14.22□□□□□ -0.13
CLK3-214ENST00000564096 F2P00734 622 aa14.22□□□□□ -0.13
CLK3-214ENST00000564096 HSPA1AP0DMV8 641 aaKnown RBP14.22□□□□□ -0.13
CLK3-214ENST00000564096 HSPA1BP0DMV9 641 aaKnown RBP14.22□□□□□ -0.13
CLK3-214ENST00000564096 CASP1P29466 404 aa14.22□□□□□ -0.13
CLK3-214ENST00000564096 CCND3P30281 292 aaPredicted RBP14.22□□□□□ -0.13
CLK3-214ENST00000564096 COASYQ13057 564 aa14.22□□□□□ -0.13
CLK3-214ENST00000564096 MORC3Q14149 939 aa14.22□□□□□ -0.13
CLK3-214ENST00000564096 PLCB4Q15147 1175 aa14.22□□□□□ -0.13
CLK3-214ENST00000564096 KMT5BQ4FZB7 885 aa14.22□□□□□ -0.13
CLK3-214ENST00000564096 C1orf186Q6ZWK4 172 aa14.22□□□□□ -0.13
CLK3-214ENST00000564096 MLKLQ8NB16 471 aa14.22□□□□□ -0.13
CLK3-214ENST00000564096 ZHX3Q9H4I2 956 aa14.22□□□□□ -0.13
CLK3-214ENST00000564096 TUT1Q9H6E5 874 aaKnown RBP14.22□□□□□ -0.13
CLK3-214ENST00000564096 PARVGQ9HBI0 331 aa14.22□□□□□ -0.13
CLK3-214ENST00000564096 PANK4Q9NVE7 773 aa14.22□□□□□ -0.13
CLK3-214ENST00000564096 SEL1LQ9UBV2 794 aa14.22□□□□□ -0.13
CLK3-214ENST00000564096 DOCK5Q9H7D0 1870 aa14.22□□□□□ -0.13
CLK3-214ENST00000564096 A0A087WWV3 80 aa14.21□□□□□ -0.13
CLK3-214ENST00000564096 FRMD3A2A2Y4 597 aa14.21□□□□□ -0.13
CLK3-214ENST00000564096 MYL3P08590 195 aa14.21□□□□□ -0.13
CLK3-214ENST00000564096 PTGS1P23219 599 aa14.21□□□□□ -0.13
CLK3-214ENST00000564096 CST5P28325 142 aaPredicted RBP14.21□□□□□ -0.13
CLK3-214ENST00000564096 NPEPPSP55786 919 aa14.21□□□□□ -0.13
CLK3-214ENST00000564096 NKX3-2P78367 333 aa14.21□□□□□ -0.13
CLK3-214ENST00000564096 TBC1D8BQ0IIM8 1120 aa14.21□□□□□ -0.13
CLK3-214ENST00000564096 PSMD2Q13200 908 aa14.21□□□□□ -0.13
CLK3-214ENST00000564096 EMC2Q15006 297 aa14.21□□□□□ -0.13
CLK3-214ENST00000564096 PKN2Q16513 984 aaKnown RBP14.21□□□□□ -0.13
CLK3-214ENST00000564096 ZNF484Q5JVG2 852 aa14.21□□□□□ -0.13
CLK3-214ENST00000564096 FAM26FQ5R3K3 315 aa14.21□□□□□ -0.13
CLK3-214ENST00000564096 ZNF658Q5TYW1 1059 aaPredicted RBP14.21□□□□□ -0.13
CLK3-214ENST00000564096 STXBP4Q6ZWJ1 553 aa14.21□□□□□ -0.13
CLK3-214ENST00000564096 RNF180Q86T96 592 aa14.21□□□□□ -0.13
CLK3-214ENST00000564096 PCSK9Q8NBP7 692 aaKnown RBP14.21□□□□□ -0.13
CLK3-214ENST00000564096 SLC17A8Q8NDX2 589 aa14.21□□□□□ -0.13
CLK3-214ENST00000564096 KIFAP3Q92845 792 aa14.21□□□□□ -0.13
CLK3-214ENST00000564096 DNAJC19Q96DA6 116 aa14.21□□□□□ -0.13
CLK3-214ENST00000564096 C16orf70Q9BSU1 422 aa14.21□□□□□ -0.13
Retrieved 100 of 20,778 RNA–protein pairs in 20.3 ms