RNA–Protein interactions for RNA: ENST00000562754.1

VPS4A-202, Transcript of vacuolar protein sorting 4 homolog A, humanhuman

TSL 2

Gene VPS4A, Length 633 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS4A-202ENST00000562754 TSEN34Q9BSV6 310 aaKnown RBP18.5■□□□□ 0.55
VPS4A-202ENST00000562754 NIFKQ9BYG3 293 aaKnown RBP18.5■□□□□ 0.55
VPS4A-202ENST00000562754 KBTBD4Q9NVX7 518 aa18.5■□□□□ 0.55
VPS4A-202ENST00000562754 TRPC6Q9Y210 931 aa18.5■□□□□ 0.55
VPS4A-202ENST00000562754 CENPFP49454 3210 aa18.5■□□□□ 0.55
VPS4A-202ENST00000562754 KIAA0100Q14667 2235 aaKnown RBP18.5■□□□□ 0.55
VPS4A-202ENST00000562754 HBP1O60381 514 aa18.49■□□□□ 0.55
VPS4A-202ENST00000562754 SGPL1O95470 568 aa18.49■□□□□ 0.55
VPS4A-202ENST00000562754 SSBP05455 408 aaKnown RBP eCLIP18.49■□□□□ 0.55
VPS4A-202ENST00000562754 PRR29P0C7W0 189 aa18.49■□□□□ 0.55
VPS4A-202ENST00000562754 KLHL40Q2TBA0 621 aa18.49■□□□□ 0.55
VPS4A-202ENST00000562754 MTERF2Q49AM1 385 aa18.49■□□□□ 0.55
VPS4A-202ENST00000562754 XKR9Q5GH70 373 aa18.49■□□□□ 0.55
VPS4A-202ENST00000562754 CEP57L1Q8IYX8 460 aa18.49■□□□□ 0.55
VPS4A-202ENST00000562754 SYT2Q8N9I0 419 aaPredicted RBP18.49■□□□□ 0.55
VPS4A-202ENST00000562754 PAGE5Q96GU1 130 aa18.49■□□□□ 0.55
VPS4A-202ENST00000562754 RUSC1Q9BVN2 902 aa18.49■□□□□ 0.55
VPS4A-202ENST00000562754 CLSTN2Q9H4D0 955 aa18.49■□□□□ 0.55
VPS4A-202ENST00000562754 MAGEF1Q9HAY2 307 aa18.49■□□□□ 0.55
VPS4A-202ENST00000562754 CYP26B1Q9NR63 512 aa18.49■□□□□ 0.55
VPS4A-202ENST00000562754 NRBP2Q9NSY0 501 aa18.49■□□□□ 0.55
VPS4A-202ENST00000562754 PHF24Q9UPV7 400 aa18.49■□□□□ 0.55
VPS4A-202ENST00000562754 ZFP91-CNTFA0A0A6YYC7 529 aaPredicted RBP18.48■□□□□ 0.55
VPS4A-202ENST00000562754 ARHGEF35A5YM69 484 aa18.48■□□□□ 0.55
VPS4A-202ENST00000562754 MOXD2PA6NHM9 499 aa18.48■□□□□ 0.55
VPS4A-202ENST00000562754 DNM1LO00429 736 aa18.48■□□□□ 0.55
VPS4A-202ENST00000562754 SMIM10L2AP0DMW4 78 aa18.48■□□□□ 0.55
VPS4A-202ENST00000562754 SMIM10L2BP0DMW5 78 aa18.48■□□□□ 0.55
VPS4A-202ENST00000562754 CYP11B2P19099 503 aa18.48■□□□□ 0.55
VPS4A-202ENST00000562754 AFMP43652 599 aa18.48■□□□□ 0.55
VPS4A-202ENST00000562754 MNX1P50219 401 aaPredicted RBP18.48■□□□□ 0.55
VPS4A-202ENST00000562754 CHMP4BP1P59074 171 aa18.48■□□□□ 0.55
VPS4A-202ENST00000562754 SV2BQ7L1I2 683 aa18.48■□□□□ 0.55
VPS4A-202ENST00000562754 OTUD6AQ7L8S5 288 aa18.48■□□□□ 0.55
VPS4A-202ENST00000562754 GPBP1Q86WP2 473 aa18.48■□□□□ 0.55
VPS4A-202ENST00000562754 TRAPPC12Q8WVT3 735 aa18.48■□□□□ 0.55
VPS4A-202ENST00000562754 CEP170P1Q96L14 293 aa18.48■□□□□ 0.55
VPS4A-202ENST00000562754 KATNAL1Q9BW62 490 aa18.48■□□□□ 0.55
VPS4A-202ENST00000562754 TNMDQ9H2S6 317 aa18.48■□□□□ 0.55
VPS4A-202ENST00000562754 KAT6AQ92794 2004 aa18.48■□□□□ 0.55
VPS4A-202ENST00000562754 COL1A2P08123 1366 aa18.47■□□□□ 0.55
VPS4A-202ENST00000562754 MYMKA6NI61 221 aa18.47■□□□□ 0.55
VPS4A-202ENST00000562754 KBTBD13C9JR72 458 aa18.47■□□□□ 0.55
VPS4A-202ENST00000562754 TRAK2O60296 914 aa18.47■□□□□ 0.55
VPS4A-202ENST00000562754 USO1O60763 962 aaKnown RBP18.47■□□□□ 0.55
VPS4A-202ENST00000562754 INSRRP14616 1297 aa18.47■□□□□ 0.55
VPS4A-202ENST00000562754 CASP1P29466 404 aa18.47■□□□□ 0.55
VPS4A-202ENST00000562754 GJA8P48165 433 aa18.47■□□□□ 0.55
VPS4A-202ENST00000562754 PPFIA1Q13136 1202 aa18.47■□□□□ 0.55
VPS4A-202ENST00000562754 HIC1Q14526 733 aa18.47■□□□□ 0.55
VPS4A-202ENST00000562754 ARSHQ5FYA8 562 aa18.47■□□□□ 0.55
VPS4A-202ENST00000562754 RINT1Q6NUQ1 792 aa18.47■□□□□ 0.55
VPS4A-202ENST00000562754 PADI6Q6TGC4 694 aa18.47■□□□□ 0.55
VPS4A-202ENST00000562754 CCDC43Q96MW1 224 aaKnown RBP18.47■□□□□ 0.55
VPS4A-202ENST00000562754 TMEM63CQ9P1W3 806 aa18.47■□□□□ 0.55
VPS4A-202ENST00000562754 TRIP12Q14669 1992 aaPredicted RBP18.47■□□□□ 0.55
VPS4A-202ENST00000562754 GRIN2DO15399 1336 aa18.47■□□□□ 0.55
VPS4A-202ENST00000562754 NPHP3-ACAD11A0A0J9YXS1 232 aa18.46■□□□□ 0.55
VPS4A-202ENST00000562754 A0A1W2PQ45 241 aaPredicted RBP18.46■□□□□ 0.55
VPS4A-202ENST00000562754 A0A1W2PQY0 241 aa18.46■□□□□ 0.55
VPS4A-202ENST00000562754 CABYRO75952 493 aa18.46■□□□□ 0.55
VPS4A-202ENST00000562754 MDM2Q00987 491 aaPredicted RBP18.46■□□□□ 0.55
VPS4A-202ENST00000562754 GRIK4Q16099 956 aa18.46■□□□□ 0.55
VPS4A-202ENST00000562754 NBPF20Q3BBV1 942 aa18.46■□□□□ 0.55
VPS4A-202ENST00000562754 ZNF484Q5JVG2 852 aa18.46■□□□□ 0.55
VPS4A-202ENST00000562754 C1orf186Q6ZWK4 172 aa18.46■□□□□ 0.55
VPS4A-202ENST00000562754 ZBTB10Q96DT7 871 aa18.46■□□□□ 0.55
VPS4A-202ENST00000562754 NUP62CLQ9H1M0 184 aa18.46■□□□□ 0.55
VPS4A-202ENST00000562754 BLZF1Q9H2G9 400 aa18.46■□□□□ 0.55
VPS4A-202ENST00000562754 XPNPEP1Q9NQW7 623 aa18.46■□□□□ 0.55
VPS4A-202ENST00000562754 BMP2KQ9NSY1 1161 aaPredicted RBP18.46■□□□□ 0.55
VPS4A-202ENST00000562754 GTPBP6O43824 516 aaPredicted RBP18.45■□□□□ 0.54
VPS4A-202ENST00000562754 C22orf31O95567 290 aa18.45■□□□□ 0.54
VPS4A-202ENST00000562754 TFRCP02786 760 aaKnown RBP18.45■□□□□ 0.54
VPS4A-202ENST00000562754 HOXC8P31273 242 aa18.45■□□□□ 0.54
VPS4A-202ENST00000562754 IGBP1P78318 339 aa18.45■□□□□ 0.54
VPS4A-202ENST00000562754 PNOCQ13519 176 aa18.45■□□□□ 0.54
VPS4A-202ENST00000562754 CUL4BQ13620 913 aa18.45■□□□□ 0.54
VPS4A-202ENST00000562754 POSTNQ15063 836 aa18.45■□□□□ 0.54
VPS4A-202ENST00000562754 CAMK4Q16566 473 aa18.45■□□□□ 0.54
VPS4A-202ENST00000562754 SKOR2Q2VWA4 1001 aaPredicted RBP18.45■□□□□ 0.54
VPS4A-202ENST00000562754 KANK3Q6NY19 840 aa18.45■□□□□ 0.54
VPS4A-202ENST00000562754 CAVIN1Q6NZI2 390 aaKnown RBP18.45■□□□□ 0.54
VPS4A-202ENST00000562754 ELOA2Q8IYF1 753 aaPredicted RBP18.45■□□□□ 0.54
VPS4A-202ENST00000562754 LMBR1Q8WVP7 490 aa18.45■□□□□ 0.54
VPS4A-202ENST00000562754 ERCC4Q92889 916 aaPredicted RBP18.45■□□□□ 0.54
VPS4A-202ENST00000562754 DNAJC19Q96DA6 116 aa18.45■□□□□ 0.54
VPS4A-202ENST00000562754 C7orf25Q9BPX7 421 aa18.45■□□□□ 0.54
VPS4A-202ENST00000562754 TRIM9Q9C026 710 aa18.45■□□□□ 0.54
VPS4A-202ENST00000562754 DHX33Q9H6R0 707 aaKnown RBP18.45■□□□□ 0.54
VPS4A-202ENST00000562754 PDLIM7Q9NR12 457 aa18.45■□□□□ 0.54
VPS4A-202ENST00000562754 SETD4Q9NVD3 440 aa18.45■□□□□ 0.54
VPS4A-202ENST00000562754 HDAC6Q9UBN7 1215 aa18.45■□□□□ 0.54
VPS4A-202ENST00000562754 PPME1Q9Y570 386 aa18.45■□□□□ 0.54
VPS4A-202ENST00000562754 MYH11P35749 1972 aa18.44■□□□□ 0.54
VPS4A-202ENST00000562754 EVPLQ92817 2033 aa18.44■□□□□ 0.54
VPS4A-202ENST00000562754 ADAM17P78536 824 aa18.44■□□□□ 0.54
VPS4A-202ENST00000562754 CACNB1Q02641 598 aaPredicted RBP18.44■□□□□ 0.54
VPS4A-202ENST00000562754 RAD51AP2Q09MP3 1159 aa18.44■□□□□ 0.54
VPS4A-202ENST00000562754 DPYDQ12882 1025 aa18.44■□□□□ 0.54
Retrieved 100 of 20,778 RNA–protein pairs in 13.1 ms