RNA–Protein interactions for RNA: ENST00000557269.5

SHMT2-227, Transcript of serine hydroxymethyltransferase 2, humanhuman

TSL 5

Gene SHMT2, Length 576 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT2-227ENST00000557269 RARRES1P49788 294 aa14.32□□□□□ -0.12
SHMT2-227ENST00000557269 NAALADL2Q58DX5 795 aa14.32□□□□□ -0.12
SHMT2-227ENST00000557269 XKR9Q5GH70 373 aa14.32□□□□□ -0.12
SHMT2-227ENST00000557269 ZNF484Q5JVG2 852 aa14.32□□□□□ -0.12
SHMT2-227ENST00000557269 C1orf53Q5VUE5 145 aa14.32□□□□□ -0.12
SHMT2-227ENST00000557269 FAM126BQ8IXS8 530 aa14.32□□□□□ -0.12
SHMT2-227ENST00000557269 PDILTQ8N807 584 aa14.32□□□□□ -0.12
SHMT2-227ENST00000557269 WNT8BQ93098 351 aa14.32□□□□□ -0.12
SHMT2-227ENST00000557269 CALML4Q96GE6 196 aa14.32□□□□□ -0.12
SHMT2-227ENST00000557269 CEP170P1Q96L14 293 aa14.32□□□□□ -0.12
SHMT2-227ENST00000557269 CYP26B1Q9NR63 512 aa14.32□□□□□ -0.12
SHMT2-227ENST00000557269 ANKEF1Q9NU02 776 aa14.32□□□□□ -0.12
SHMT2-227ENST00000557269 BLOC1S4Q9NUP1 217 aa14.32□□□□□ -0.12
SHMT2-227ENST00000557269 HPSEQ9Y251 543 aa14.32□□□□□ -0.12
SHMT2-227ENST00000557269 NRCAMQ92823 1304 aa14.32□□□□□ -0.12
SHMT2-227ENST00000557269 KDM3AQ9Y4C1 1321 aa14.32□□□□□ -0.12
SHMT2-227ENST00000557269 FAM237AA0A1B0GTK4 181 aa14.31□□□□□ -0.12
SHMT2-227ENST00000557269 A0A1W2PQ27 194 aa14.31□□□□□ -0.12
SHMT2-227ENST00000557269 A0A1W2PQ64 194 aa14.31□□□□□ -0.12
SHMT2-227ENST00000557269 A0A1W2PQD8 194 aa14.31□□□□□ -0.12
SHMT2-227ENST00000557269 MBLAC1A4D2B0 266 aaPredicted RBP14.31□□□□□ -0.12
SHMT2-227ENST00000557269 SLC26A4O43511 780 aa14.31□□□□□ -0.12
SHMT2-227ENST00000557269 PQBP1O60828 265 aaKnown RBP14.31□□□□□ -0.12
SHMT2-227ENST00000557269 PRPF40AO75400 957 aaKnown RBP14.31□□□□□ -0.12
SHMT2-227ENST00000557269 C22orf31O95567 290 aa14.31□□□□□ -0.12
SHMT2-227ENST00000557269 CD4P01730 458 aa14.31□□□□□ -0.12
SHMT2-227ENST00000557269 XRCC6P12956 609 aaKnown RBP eCLIP14.31□□□□□ -0.12
SHMT2-227ENST00000557269 PFKFB1P16118 471 aa14.31□□□□□ -0.12
SHMT2-227ENST00000557269 KLRC1P26715 233 aa14.31□□□□□ -0.12
SHMT2-227ENST00000557269 NDUFA8P51970 172 aa14.31□□□□□ -0.12
SHMT2-227ENST00000557269 RTP1P59025 263 aa14.31□□□□□ -0.12
SHMT2-227ENST00000557269 TLE2Q04725 743 aa14.31□□□□□ -0.12
SHMT2-227ENST00000557269 PTPN11Q06124 597 aaPredicted RBP14.31□□□□□ -0.12
SHMT2-227ENST00000557269 E2F4Q16254 413 aa14.31□□□□□ -0.12
SHMT2-227ENST00000557269 PTGISQ16647 500 aa14.31□□□□□ -0.12
SHMT2-227ENST00000557269 MTHFD1LQ6UB35 978 aa14.31□□□□□ -0.12
SHMT2-227ENST00000557269 RUFY4Q6ZNE9 571 aa14.31□□□□□ -0.12
SHMT2-227ENST00000557269 ANKRD33Q7Z3H0 272 aa14.31□□□□□ -0.12
SHMT2-227ENST00000557269 FSIP1Q8NA03 581 aa14.31□□□□□ -0.12
SHMT2-227ENST00000557269 RASSF8Q8NHQ8 419 aa14.31□□□□□ -0.12
SHMT2-227ENST00000557269 CDK5RAP3Q96JB5 506 aa14.31□□□□□ -0.12
SHMT2-227ENST00000557269 BHMT2Q9H2M3 363 aa14.31□□□□□ -0.12
SHMT2-227ENST00000557269 BMP2KQ9NSY1 1161 aaPredicted RBP14.31□□□□□ -0.12
SHMT2-227ENST00000557269 PCDH10Q9P2E7 1040 aa14.31□□□□□ -0.12
SHMT2-227ENST00000557269 DBR1Q9UK59 544 aaKnown RBP14.31□□□□□ -0.12
SHMT2-227ENST00000557269 DNM3Q9UQ16 869 aa14.31□□□□□ -0.12
SHMT2-227ENST00000557269 ATP11BQ9Y2G3 1177 aa14.31□□□□□ -0.12
SHMT2-227ENST00000557269 RRN3P2A6NIE6 340 aa14.3□□□□□ -0.12
SHMT2-227ENST00000557269 EYA4O95677 639 aa14.3□□□□□ -0.12
SHMT2-227ENST00000557269 CYP2C9P11712 490 aa14.3□□□□□ -0.12
SHMT2-227ENST00000557269 TXLNAP40222 546 aa14.3□□□□□ -0.12
SHMT2-227ENST00000557269 SLC12A3P55017 1021 aa14.3□□□□□ -0.12
SHMT2-227ENST00000557269 FAAP100Q0VG06 881 aa14.3□□□□□ -0.12
SHMT2-227ENST00000557269 MKRN4PQ13434 485 aaPredicted RBP14.3□□□□□ -0.12
SHMT2-227ENST00000557269 DRP2Q13474 957 aa14.3□□□□□ -0.12
SHMT2-227ENST00000557269 MCM6Q14566 821 aa14.3□□□□□ -0.12
SHMT2-227ENST00000557269 RRAGBQ5VZM2 374 aa14.3□□□□□ -0.12
SHMT2-227ENST00000557269 OTUD6AQ7L8S5 288 aa14.3□□□□□ -0.12
SHMT2-227ENST00000557269 DHX38Q92620 1227 aaKnown RBP14.3□□□□□ -0.12
SHMT2-227ENST00000557269 RAD54LQ92698 747 aa14.3□□□□□ -0.12
SHMT2-227ENST00000557269 NT5C3AQ9H0P0 336 aa14.3□□□□□ -0.12
SHMT2-227ENST00000557269 FAM13BQ9NYF5 915 aa14.3□□□□□ -0.12
SHMT2-227ENST00000557269 CCDC39Q9UFE4 941 aa14.3□□□□□ -0.12
SHMT2-227ENST00000557269 TUBE1Q9UJT0 475 aa14.3□□□□□ -0.12
SHMT2-227ENST00000557269 KCNH3Q9ULD8 1083 aa14.3□□□□□ -0.12
SHMT2-227ENST00000557269 COL1A2P08123 1366 aa14.3□□□□□ -0.12
SHMT2-227ENST00000557269 POLR2DO15514 142 aaKnown RBP14.29□□□□□ -0.12
SHMT2-227ENST00000557269 PLA2G4BP0C869 781 aa14.29□□□□□ -0.12
SHMT2-227ENST00000557269 DHX8Q14562 1220 aaKnown RBP14.29□□□□□ -0.12
SHMT2-227ENST00000557269 PADI6Q6TGC4 694 aa14.29□□□□□ -0.12
SHMT2-227ENST00000557269 SERINC5Q86VE9 423 aa14.29□□□□□ -0.12
SHMT2-227ENST00000557269 LRRC71Q8N4P6 559 aa14.29□□□□□ -0.12
SHMT2-227ENST00000557269 LINC01465Q8N7H1 131 aa14.29□□□□□ -0.12
SHMT2-227ENST00000557269 MRPS27Q92552 414 aaKnown RBP14.29□□□□□ -0.12
SHMT2-227ENST00000557269 DHX58Q96C10 678 aa14.29□□□□□ -0.12
SHMT2-227ENST00000557269 RUSC1Q9BVN2 902 aa14.29□□□□□ -0.12
SHMT2-227ENST00000557269 DHX33Q9H6R0 707 aaKnown RBP14.29□□□□□ -0.12
SHMT2-227ENST00000557269 POLD4Q9HCU8 107 aa14.29□□□□□ -0.12
SHMT2-227ENST00000557269 XPNPEP1Q9NQW7 623 aa14.29□□□□□ -0.12
SHMT2-227ENST00000557269 PDLIM7Q9NR12 457 aa14.29□□□□□ -0.12
SHMT2-227ENST00000557269 LMBRD1Q9NUN5 540 aa14.29□□□□□ -0.12
SHMT2-227ENST00000557269 ARID2Q68CP9 1835 aa14.29□□□□□ -0.12
SHMT2-227ENST00000557269 ALPK3Q96L96 1907 aa14.29□□□□□ -0.12
SHMT2-227ENST00000557269 TRIP12Q14669 1992 aaPredicted RBP14.29□□□□□ -0.12
SHMT2-227ENST00000557269 DNAH12Q6ZR08 3092 aa14.28□□□□□ -0.12
SHMT2-227ENST00000557269 IGKV6-21A0A0C4DH24 114 aa14.28□□□□□ -0.12
SHMT2-227ENST00000557269 NPHP3-ACAD11A0A0J9YXS1 232 aa14.28□□□□□ -0.12
SHMT2-227ENST00000557269 ARHGEF35A5YM69 484 aa14.28□□□□□ -0.12
SHMT2-227ENST00000557269 GOLGA6L4A6NEF3 574 aa14.28□□□□□ -0.12
SHMT2-227ENST00000557269 USO1O60763 962 aaKnown RBP14.28□□□□□ -0.12
SHMT2-227ENST00000557269 MAFO75444 373 aaPredicted RBP14.28□□□□□ -0.12
SHMT2-227ENST00000557269 CAPN15O75808 1086 aa14.28□□□□□ -0.12
SHMT2-227ENST00000557269 SSBP05455 408 aaKnown RBP eCLIP14.28□□□□□ -0.12
SHMT2-227ENST00000557269 GNAT1P11488 350 aa14.28□□□□□ -0.12
SHMT2-227ENST00000557269 LIG1P18858 919 aa14.28□□□□□ -0.12
SHMT2-227ENST00000557269 STAT6P42226 847 aa14.28□□□□□ -0.12
SHMT2-227ENST00000557269 TBC1D8BQ0IIM8 1120 aa14.28□□□□□ -0.12
SHMT2-227ENST00000557269 CSPP1Q1MSJ5 1256 aa14.28□□□□□ -0.12
SHMT2-227ENST00000557269 TRIM71Q2Q1W2 868 aaKnown RBP14.28□□□□□ -0.12
SHMT2-227ENST00000557269 ARSHQ5FYA8 562 aa14.28□□□□□ -0.12
Retrieved 100 of 20,778 RNA–protein pairs in 19.8 ms