RNA–Protein interactions for RNA: ENST00000552839.6

TMEM116-218, Transcript of transmembrane protein 116, humanhuman

TSL 4

Gene TMEM116, Length 511 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TMEM116-218ENST00000552839 HERC4Q5GLZ8 1057 aaPredicted RBP12.86□□□□□ -0.35
TMEM116-218ENST00000552839 KCNV1Q6PIU1 500 aa12.86□□□□□ -0.35
TMEM116-218ENST00000552839 NEK8Q86SG6 692 aa12.86□□□□□ -0.35
TMEM116-218ENST00000552839 NLRX1Q86UT6 975 aa12.86□□□□□ -0.35
TMEM116-218ENST00000552839 FERMT3Q86UX7 667 aa12.86□□□□□ -0.35
TMEM116-218ENST00000552839 NOSTRINQ8IVI9 506 aa12.86□□□□□ -0.35
TMEM116-218ENST00000552839 IL31RAQ8NI17 732 aa12.86□□□□□ -0.35
TMEM116-218ENST00000552839 OXER1Q8TDS5 423 aa12.86□□□□□ -0.35
TMEM116-218ENST00000552839 TBCKQ8TEA7 893 aa12.86□□□□□ -0.35
TMEM116-218ENST00000552839 MFSD14AQ96MC6 490 aa12.86□□□□□ -0.35
TMEM116-218ENST00000552839 IFIH1Q9BYX4 1025 aaKnown RBP12.86□□□□□ -0.35
TMEM116-218ENST00000552839 TUT1Q9H6E5 874 aaKnown RBP12.86□□□□□ -0.35
TMEM116-218ENST00000552839 BCAS3Q9H6U6 928 aa12.86□□□□□ -0.35
TMEM116-218ENST00000552839 C5orf67F2Z3F1 127 aa12.85□□□□□ -0.35
TMEM116-218ENST00000552839 GRM6O15303 877 aa12.85□□□□□ -0.35
TMEM116-218ENST00000552839 NCK2O43639 380 aa12.85□□□□□ -0.35
TMEM116-218ENST00000552839 CAND2O75155 1236 aa12.85□□□□□ -0.35
TMEM116-218ENST00000552839 LGALS2P05162 132 aa12.85□□□□□ -0.35
TMEM116-218ENST00000552839 TGFB3P10600 412 aa12.85□□□□□ -0.35
TMEM116-218ENST00000552839 CTNNB1P35222 781 aa12.85□□□□□ -0.35
TMEM116-218ENST00000552839 GTF2F1P35269 517 aaKnown RBP eCLIP12.85□□□□□ -0.35
TMEM116-218ENST00000552839 BMPR1AP36894 532 aa12.85□□□□□ -0.35
TMEM116-218ENST00000552839 SREBF1P36956 1147 aa12.85□□□□□ -0.35
TMEM116-218ENST00000552839 NUCB2P80303 420 aa12.85□□□□□ -0.35
TMEM116-218ENST00000552839 ARHGAP4P98171 946 aa12.85□□□□□ -0.35
TMEM116-218ENST00000552839 XRRA1Q6P2D8 792 aa12.85□□□□□ -0.35
TMEM116-218ENST00000552839 BRAPQ7Z569 592 aa12.85□□□□□ -0.35
TMEM116-218ENST00000552839 VSIG10LQ86VR7 867 aa12.85□□□□□ -0.35
TMEM116-218ENST00000552839 RNF135Q8IUD6 432 aa12.85□□□□□ -0.35
TMEM116-218ENST00000552839 FIBCD1Q8N539 461 aa12.85□□□□□ -0.35
TMEM116-218ENST00000552839 SNX27Q96L92 541 aa12.85□□□□□ -0.35
TMEM116-218ENST00000552839 MLXIPQ9HAP2 919 aa12.85□□□□□ -0.35
TMEM116-218ENST00000552839 TTC3P53804 2025 aa12.84□□□□□ -0.35
TMEM116-218ENST00000552839 WDFY4Q6ZS81 3184 aa12.84□□□□□ -0.35
TMEM116-218ENST00000552839 KIAA1671Q9BY89 1806 aa12.84□□□□□ -0.35
TMEM116-218ENST00000552839 CCNT1O60563 726 aaKnown RBP12.84□□□□□ -0.35
TMEM116-218ENST00000552839 TBX10O75333 385 aa12.84□□□□□ -0.35
TMEM116-218ENST00000552839 STAM2O75886 525 aa12.84□□□□□ -0.35
TMEM116-218ENST00000552839 RB1P06400 928 aa12.84□□□□□ -0.35
TMEM116-218ENST00000552839 CLK2P49760 499 aaKnown RBP12.84□□□□□ -0.35
TMEM116-218ENST00000552839 SETQ01105 290 aaPredicted RBP12.84□□□□□ -0.35
TMEM116-218ENST00000552839 PCNX4Q63HM2 1172 aa12.84□□□□□ -0.35
TMEM116-218ENST00000552839 PRSS33Q8NF86 280 aa12.84□□□□□ -0.35
TMEM116-218ENST00000552839 APBB2Q92870 758 aa12.84□□□□□ -0.35
TMEM116-218ENST00000552839 CDHR1Q96JP9 859 aa12.84□□□□□ -0.35
TMEM116-218ENST00000552839 POP1Q99575 1024 aaKnown RBP12.84□□□□□ -0.35
TMEM116-218ENST00000552839 LMAN2LQ9H0V9 348 aa12.84□□□□□ -0.35
TMEM116-218ENST00000552839 ZSCAN16Q9H4T2 348 aaPredicted RBP12.84□□□□□ -0.35
TMEM116-218ENST00000552839 SETD4Q9NVD3 440 aa12.84□□□□□ -0.35
TMEM116-218ENST00000552839 ATP6V1DQ9Y5K8 247 aa12.84□□□□□ -0.35
TMEM116-218ENST00000552839 C5orf42Q9H799 3197 aa12.83□□□□□ -0.35
TMEM116-218ENST00000552839 LINC01565O15544 149 aa12.83□□□□□ -0.36
TMEM116-218ENST00000552839 ZSCAN22P10073 491 aaPredicted RBP12.83□□□□□ -0.36
TMEM116-218ENST00000552839 GCFC2P16383 781 aaKnown RBP12.83□□□□□ -0.36
TMEM116-218ENST00000552839 ADAM17P78536 824 aa12.83□□□□□ -0.36
TMEM116-218ENST00000552839 SMAD4Q13485 552 aaKnown RBP12.83□□□□□ -0.36
TMEM116-218ENST00000552839 FAM26DQ5JW98 314 aa12.83□□□□□ -0.36
TMEM116-218ENST00000552839 IER5LQ5T953 404 aa12.83□□□□□ -0.36
TMEM116-218ENST00000552839 EDAQ92838 391 aa12.83□□□□□ -0.36
TMEM116-218ENST00000552839 C11orf84Q9BUA3 381 aaPredicted RBP12.83□□□□□ -0.36
TMEM116-218ENST00000552839 IGFLR1Q9H665 355 aa12.83□□□□□ -0.36
TMEM116-218ENST00000552839 RTEL1Q9NZ71 1219 aa12.83□□□□□ -0.36
TMEM116-218ENST00000552839 FRMPD4Q14CM0 1322 aa12.83□□□□□ -0.36
TMEM116-218ENST00000552839 KMT2EQ8IZD2 1858 aa12.82□□□□□ -0.36
TMEM116-218ENST00000552839 LOXHD1Q8IVV2 1947 aa12.82□□□□□ -0.36
TMEM116-218ENST00000552839 CSPG5O95196 566 aa12.82□□□□□ -0.36
TMEM116-218ENST00000552839 F13A1P00488 732 aa12.82□□□□□ -0.36
TMEM116-218ENST00000552839 GNAT1P11488 350 aa12.82□□□□□ -0.36
TMEM116-218ENST00000552839 NCLP19338 710 aaKnown RBP12.82□□□□□ -0.36
TMEM116-218ENST00000552839 TRAPPC10P48553 1259 aa12.82□□□□□ -0.36
TMEM116-218ENST00000552839 ADAM15Q13444 863 aa12.82□□□□□ -0.36
TMEM116-218ENST00000552839 MTMR1Q13613 665 aa12.82□□□□□ -0.36
TMEM116-218ENST00000552839 CAMK1Q14012 370 aa12.82□□□□□ -0.36
TMEM116-218ENST00000552839 NPY5RQ15761 445 aa12.82□□□□□ -0.36
TMEM116-218ENST00000552839 RILPL1Q5EBL4 403 aa12.82□□□□□ -0.36
TMEM116-218ENST00000552839 TTC38Q5R3I4 469 aa12.82□□□□□ -0.36
TMEM116-218ENST00000552839 BMP8AQ7Z5Y6 402 aa12.82□□□□□ -0.36
TMEM116-218ENST00000552839 PLA2G4DQ86XP0 818 aa12.82□□□□□ -0.36
TMEM116-218ENST00000552839 TRIM50Q86XT4 487 aa12.82□□□□□ -0.36
TMEM116-218ENST00000552839 CLP1Q92989 425 aaKnown RBP12.82□□□□□ -0.36
TMEM116-218ENST00000552839 ZNF396Q96N95 335 aaPredicted RBP12.82□□□□□ -0.36
TMEM116-218ENST00000552839 RC3H2Q9HBD1 1191 aaKnown RBP12.82□□□□□ -0.36
TMEM116-218ENST00000552839 PKD2L1Q9P0L9 805 aa12.82□□□□□ -0.36
TMEM116-218ENST00000552839 DDX25Q9UHL0 483 aaKnown RBP12.82□□□□□ -0.36
TMEM116-218ENST00000552839 CD207Q9UJ71 328 aa12.82□□□□□ -0.36
TMEM116-218ENST00000552839 CEP131Q9UPN4 1083 aa12.82□□□□□ -0.36
TMEM116-218ENST00000552839 MTMR6Q9Y217 621 aa12.82□□□□□ -0.36
TMEM116-218ENST00000552839 RWDD3Q9Y3V2 267 aa12.82□□□□□ -0.36
TMEM116-218ENST00000552839 ADGRA3Q8IWK6 1321 aa12.82□□□□□ -0.36
TMEM116-218ENST00000552839 FAM205CA6NFA0 338 aa12.81□□□□□ -0.36
TMEM116-218ENST00000552839 NOP56O00567 594 aaKnown RBP12.81□□□□□ -0.36
TMEM116-218ENST00000552839 FIBPO43427 364 aa12.81□□□□□ -0.36
TMEM116-218ENST00000552839 BAG4O95429 457 aaKnown RBP12.81□□□□□ -0.36
TMEM116-218ENST00000552839 CHRNA1P02708 482 aa12.81□□□□□ -0.36
TMEM116-218ENST00000552839 GHRP10912 638 aa12.81□□□□□ -0.36
TMEM116-218ENST00000552839 U2AF2P26368 475 aaKnown RBP eCLIP12.81□□□□□ -0.362e-6■■□□□ 11.9
TMEM116-218ENST00000552839 USP11P51784 963 aa12.81□□□□□ -0.36
TMEM116-218ENST00000552839 FOXD4L6Q3SYB3 417 aaPredicted RBP12.81□□□□□ -0.36
TMEM116-218ENST00000552839 CEP55Q53EZ4 464 aa12.81□□□□□ -0.36
TMEM116-218ENST00000552839 PRR16Q569H4 304 aa12.81□□□□□ -0.36
Retrieved 100 of 20,778 RNA–protein pairs in 19.8 ms