RNA–Protein interactions for RNA: ENST00000551691.5

LIMA1-208, Transcript of LIM domain and actin binding 1, humanhuman

TSL 3

Gene LIMA1, Length 583 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMA1-208ENST00000551691 LRRN2O75325 713 aa4.81□□□□□ -1.64
LIMA1-208ENST00000551691 ITGAVP06756 1048 aa4.81□□□□□ -1.64
LIMA1-208ENST00000551691 PABPC1P11940 636 aaKnown RBP4.81□□□□□ -1.64
LIMA1-208ENST00000551691 ITGA4P13612 1032 aa4.81□□□□□ -1.64
LIMA1-208ENST00000551691 CAP2P40123 477 aa4.81□□□□□ -1.64
LIMA1-208ENST00000551691 ITKQ08881 620 aa4.81□□□□□ -1.64
LIMA1-208ENST00000551691 NBPF12Q5TAG4 269 aaPredicted RBP4.81□□□□□ -1.64
LIMA1-208ENST00000551691 YOD1Q5VVQ6 348 aaPredicted RBP4.81□□□□□ -1.64
LIMA1-208ENST00000551691 PPP4R4Q6NUP7 873 aa4.81□□□□□ -1.64
LIMA1-208ENST00000551691 UBE2R2Q712K3 238 aaPredicted RBP4.81□□□□□ -1.64
LIMA1-208ENST00000551691 BVESQ8NE79 360 aa4.81□□□□□ -1.64
LIMA1-208ENST00000551691 WDR66Q8TBY9 1149 aa4.81□□□□□ -1.64
LIMA1-208ENST00000551691 CYB5D2Q8WUJ1 264 aa4.81□□□□□ -1.64
LIMA1-208ENST00000551691 CD320Q9NPF0 282 aa4.81□□□□□ -1.64
LIMA1-208ENST00000551691 ARHGEF4Q9NR80 690 aa4.81□□□□□ -1.64
LIMA1-208ENST00000551691 WHRNQ9P202 907 aa4.81□□□□□ -1.64
LIMA1-208ENST00000551691 FBXL21Q9UKT6 434 aa4.81□□□□□ -1.64
LIMA1-208ENST00000551691 AKT3Q9Y243 479 aa4.81□□□□□ -1.64
LIMA1-208ENST00000551691 THSD7BQ9C0I4 1608 aa4.81□□□□□ -1.64
LIMA1-208ENST00000551691 LAMA3Q16787 3333 aa4.81□□□□□ -1.64
LIMA1-208ENST00000551691 LTN1O94822 1766 aa4.81□□□□□ -1.64
LIMA1-208ENST00000551691 ADAMTSL1Q8N6G6 1762 aa4.81□□□□□ -1.64
LIMA1-208ENST00000551691 MYH14Q7Z406 1995 aaKnown RBP4.8□□□□□ -1.64
LIMA1-208ENST00000551691 HTTP42858 3142 aa4.8□□□□□ -1.64
LIMA1-208ENST00000551691 DICER1Q9UPY3 1922 aaKnown RBP4.8□□□□□ -1.64
LIMA1-208ENST00000551691 CENPJQ9HC77 1338 aaPredicted RBP4.8□□□□□ -1.64
LIMA1-208ENST00000551691 B8ZZF3 427 aa4.8□□□□□ -1.64
LIMA1-208ENST00000551691 KPNA6O60684 536 aa4.8□□□□□ -1.64
LIMA1-208ENST00000551691 TBC1D8O95759 1140 aa4.8□□□□□ -1.64
LIMA1-208ENST00000551691 KRT18P05783 430 aaKnown RBP4.8□□□□□ -1.64
LIMA1-208ENST00000551691 CT47B1P0C2W7 299 aaPredicted RBP4.8□□□□□ -1.64
LIMA1-208ENST00000551691 FGFR1P11362 822 aa4.8□□□□□ -1.64
LIMA1-208ENST00000551691 CYP7A1P22680 504 aa4.8□□□□□ -1.64
LIMA1-208ENST00000551691 KIR3DL1P43629 444 aa4.8□□□□□ -1.64
LIMA1-208ENST00000551691 CRKLP46109 303 aaKnown RBP4.8□□□□□ -1.64
LIMA1-208ENST00000551691 EGR3Q06889 387 aa4.8□□□□□ -1.64
LIMA1-208ENST00000551691 RRS1Q15050 365 aaKnown RBP4.8□□□□□ -1.64
LIMA1-208ENST00000551691 TTF1Q15361 905 aaPredicted RBP4.8□□□□□ -1.64
LIMA1-208ENST00000551691 FOXB2Q5VYV0 432 aa4.8□□□□□ -1.64
LIMA1-208ENST00000551691 TTLL10Q6ZVT0 673 aa4.8□□□□□ -1.64
LIMA1-208ENST00000551691 RNF180Q86T96 592 aa4.8□□□□□ -1.64
LIMA1-208ENST00000551691 ZNF227Q86WZ6 799 aa4.8□□□□□ -1.64
LIMA1-208ENST00000551691 MRPL41Q8IXM3 137 aaKnown RBP4.8□□□□□ -1.64
LIMA1-208ENST00000551691 TMEM192Q8IY95 271 aa4.8□□□□□ -1.64
LIMA1-208ENST00000551691 ADCY4Q8NFM4 1077 aa4.8□□□□□ -1.64
LIMA1-208ENST00000551691 DNAJB8Q8NHS0 232 aa4.8□□□□□ -1.64
LIMA1-208ENST00000551691 RELTQ969Z4 430 aa4.8□□□□□ -1.64
LIMA1-208ENST00000551691 ZNF512BQ96KM6 892 aaPredicted RBP4.8□□□□□ -1.64
LIMA1-208ENST00000551691 C8orf48Q96LL4 319 aa4.8□□□□□ -1.64
LIMA1-208ENST00000551691 TTC1Q99614 292 aa4.8□□□□□ -1.64
LIMA1-208ENST00000551691 DUSP15Q9H1R2 295 aaPredicted RBP4.8□□□□□ -1.64
LIMA1-208ENST00000551691 XPO5Q9HAV4 1204 aaKnown RBP eCLIP4.8□□□□□ -1.64
LIMA1-208ENST00000551691 DUSP13Q9UII6 198 aa4.8□□□□□ -1.64
LIMA1-208ENST00000551691 FAM208AQ9UK61 1670 aaKnown RBP4.8□□□□□ -1.64
LIMA1-208ENST00000551691 SCN4AP35499 1836 aa4.79□□□□□ -1.64
LIMA1-208ENST00000551691 NCANO14594 1321 aa4.79□□□□□ -1.64
LIMA1-208ENST00000551691 PCDH11XQ9BZA7 1347 aa4.79□□□□□ -1.64
LIMA1-208ENST00000551691 PCDH11YQ9BZA8 1340 aa4.79□□□□□ -1.64
LIMA1-208ENST00000551691 EYSQ5T1H1 3165 aa4.79□□□□□ -1.64
LIMA1-208ENST00000551691 GSG1L2A8MUP6 293 aa4.79□□□□□ -1.64
LIMA1-208ENST00000551691 B4E1Z4 1266 aa4.79□□□□□ -1.64
LIMA1-208ENST00000551691 PRRG2O14669 202 aa4.79□□□□□ -1.64
LIMA1-208ENST00000551691 BRINP1O60477 761 aa4.79□□□□□ -1.64
LIMA1-208ENST00000551691 CAND2O75155 1236 aa4.79□□□□□ -1.64
LIMA1-208ENST00000551691 KATNA1O75449 491 aa4.79□□□□□ -1.64
LIMA1-208ENST00000551691 HPXP02790 462 aa4.79□□□□□ -1.64
LIMA1-208ENST00000551691 IGFALSP35858 605 aa4.79□□□□□ -1.64
LIMA1-208ENST00000551691 HUNKP57058 714 aa4.79□□□□□ -1.64
LIMA1-208ENST00000551691 LINC00310P59036 64 aa4.79□□□□□ -1.64
LIMA1-208ENST00000551691 GABREP78334 506 aa4.79□□□□□ -1.64
LIMA1-208ENST00000551691 BIRC2Q13490 618 aa4.79□□□□□ -1.64
LIMA1-208ENST00000551691 HDAC1Q13547 482 aaPredicted RBP4.79□□□□□ -1.64
LIMA1-208ENST00000551691 BRD3Q15059 726 aa4.79□□□□□ -1.64
LIMA1-208ENST00000551691 NBPF9Q3BBW0 867 aa4.79□□□□□ -1.64
LIMA1-208ENST00000551691 DCAF15Q66K64 600 aa4.79□□□□□ -1.64
LIMA1-208ENST00000551691 CCSAPQ6IQ19 270 aaPredicted RBP4.79□□□□□ -1.64
LIMA1-208ENST00000551691 NECAB2Q7Z6G3 386 aa4.79□□□□□ -1.64
LIMA1-208ENST00000551691 ZNF605Q86T29 641 aa4.79□□□□□ -1.64
LIMA1-208ENST00000551691 ZBTB46Q86UZ6 589 aa4.79□□□□□ -1.64
LIMA1-208ENST00000551691 PPFIBP1Q86W92 1011 aa4.79□□□□□ -1.64
LIMA1-208ENST00000551691 SIAH1Q8IUQ4 282 aa4.79□□□□□ -1.64
LIMA1-208ENST00000551691 OR2W6PQ8NHA6 318 aa4.79□□□□□ -1.64
LIMA1-208ENST00000551691 BAHD1Q8TBE0 780 aaPredicted RBP4.79□□□□□ -1.64
LIMA1-208ENST00000551691 KCTD13Q8WZ19 329 aa4.79□□□□□ -1.64
LIMA1-208ENST00000551691 KISS1RQ969F8 398 aaPredicted RBP4.79□□□□□ -1.64
LIMA1-208ENST00000551691 MAGEB10Q96LZ2 347 aaPredicted RBP4.79□□□□□ -1.64
LIMA1-208ENST00000551691 DSCC1Q9BVC3 393 aa4.79□□□□□ -1.64
LIMA1-208ENST00000551691 SGPP1Q9BX95 441 aa4.79□□□□□ -1.64
LIMA1-208ENST00000551691 FAM126AQ9BYI3 521 aaPredicted RBP4.79□□□□□ -1.64
LIMA1-208ENST00000551691 SLC12A5Q9H2X9 1139 aa4.79□□□□□ -1.64
LIMA1-208ENST00000551691 R3HDMLQ9H3Y0 253 aa4.79□□□□□ -1.64
LIMA1-208ENST00000551691 AASDHPPTQ9NRN7 309 aa4.79□□□□□ -1.64
LIMA1-208ENST00000551691 SLC5A4Q9NY91 659 aa4.79□□□□□ -1.64
LIMA1-208ENST00000551691 HDAC9Q9UKV0 1011 aa4.79□□□□□ -1.64
LIMA1-208ENST00000551691 PCDHB12Q9Y5F1 795 aa4.79□□□□□ -1.64
LIMA1-208ENST00000551691 PCDHA11Q9Y5I1 949 aa4.79□□□□□ -1.64
LIMA1-208ENST00000551691 CD163L1Q9NR16 1453 aa4.79□□□□□ -1.64
LIMA1-208ENST00000551691 FER1L6Q2WGJ9 1857 aa4.79□□□□□ -1.64
LIMA1-208ENST00000551691 SLX4Q8IY92 1834 aa4.79□□□□□ -1.64
LIMA1-208ENST00000551691 CACNA1SQ13698 1873 aa4.78□□□□□ -1.64
Retrieved 100 of 20,778 RNA–protein pairs in 36.3 ms