RNA–Protein interactions for RNA: ENST00000551425.1

PTCH1-222, Transcript of patched 1, human

TSL 1 (best)

Gene PTCH1, Length 241 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum .

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RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
PTCH1-222	ENST00000551425	AR	P10275	920 aa		13.74	□□□□□ -0.21
PTCH1-222	ENST00000551425	KCNA2	P16389	499 aa		13.74	□□□□□ -0.21
PTCH1-222	ENST00000551425	PDE4A	P27815	886 aa		13.74	□□□□□ -0.21
PTCH1-222	ENST00000551425	PPM1A	P35813	382 aa		13.74	□□□□□ -0.21
PTCH1-222	ENST00000551425	KRT76	Q01546	638 aa		13.74	□□□□□ -0.21
PTCH1-222	ENST00000551425	NFX1	Q12986	1120 aa	Known RBP	13.74	□□□□□ -0.21
PTCH1-222	ENST00000551425	NMI	Q13287	307 aa	Predicted RBP	13.74	□□□□□ -0.21
PTCH1-222	ENST00000551425	TMEM266	Q2M3C6	531 aa		13.74	□□□□□ -0.21
PTCH1-222	ENST00000551425	TMC7	Q7Z402	723 aa		13.74	□□□□□ -0.21
PTCH1-222	ENST00000551425	HOMER1	Q86YM7	354 aa		13.74	□□□□□ -0.21
PTCH1-222	ENST00000551425	MRPL43	Q8N983	215 aa	Known RBP	13.74	□□□□□ -0.21
PTCH1-222	ENST00000551425	GPRASP2	Q96D09	838 aa		13.74	□□□□□ -0.21
PTCH1-222	ENST00000551425	PIGS	Q96S52	555 aa		13.74	□□□□□ -0.21
PTCH1-222	ENST00000551425	ADAM2	Q99965	735 aa		13.74	□□□□□ -0.21
PTCH1-222	ENST00000551425	CYP26B1	Q9NR63	512 aa		13.74	□□□□□ -0.21
PTCH1-222	ENST00000551425	MYO10	Q9HD67	2058 aa		13.74	□□□□□ -0.21
PTCH1-222	ENST00000551425	KAT6A	Q92794	2004 aa		13.74	□□□□□ -0.21
PTCH1-222	ENST00000551425	PNMA6F	A0A0J9YX94	578 aa		13.73	□□□□□ -0.21
PTCH1-222	ENST00000551425	SMIM35	A0A1B0GVV1	85 aa		13.73	□□□□□ -0.21
PTCH1-222	ENST00000551425	DENND3	A2RUS2	1198 aa		13.73	□□□□□ -0.21
PTCH1-222	ENST00000551425	C2orf71	A6NGG8	1288 aa		13.73	□□□□□ -0.21
PTCH1-222	ENST00000551425	CLASP2	O75122	1294 aa	Known RBP	13.73	□□□□□ -0.21
PTCH1-222	ENST00000551425	EOMES	O95936	686 aa		13.73	□□□□□ -0.21
PTCH1-222	ENST00000551425	IBSP	P21815	317 aa	Predicted RBP	13.73	□□□□□ -0.21
PTCH1-222	ENST00000551425	MFAP1	P55081	439 aa	Known RBP	13.73	□□□□□ -0.21
PTCH1-222	ENST00000551425	FAM189B	P81408	668 aa		13.73	□□□□□ -0.21
PTCH1-222	ENST00000551425	KRT17	Q04695	432 aa		13.73	□□□□□ -0.21
PTCH1-222	ENST00000551425	SMC1A	Q14683	1233 aa	Known RBP	13.73	□□□□□ -0.21
PTCH1-222	ENST00000551425	ATAT1	Q5SQI0	421 aa		13.73	□□□□□ -0.21
PTCH1-222	ENST00000551425	IFIT1B	Q5T764	474 aa	Known RBP	13.73	□□□□□ -0.21
PTCH1-222	ENST00000551425	KCNT2	Q6UVM3	1135 aa		13.73	□□□□□ -0.21
PTCH1-222	ENST00000551425	CYP2W1	Q8TAV3	490 aa		13.73	□□□□□ -0.21
PTCH1-222	ENST00000551425	TNPO1	Q92973	898 aa	Known RBP	13.73	□□□□□ -0.21
PTCH1-222	ENST00000551425	CDHR1	Q96JP9	859 aa		13.73	□□□□□ -0.21
PTCH1-222	ENST00000551425	UBAC1	Q9BSL1	405 aa		13.73	□□□□□ -0.21
PTCH1-222	ENST00000551425	ELAC1	Q9H777	363 aa	Known RBP	13.73	□□□□□ -0.21
PTCH1-222	ENST00000551425	ATP6V0A4	Q9HBG4	840 aa		13.73	□□□□□ -0.21
PTCH1-222	ENST00000551425	TMEM161A	Q9NX61	479 aa		13.73	□□□□□ -0.21
PTCH1-222	ENST00000551425	DBR1	Q9UK59	544 aa	Known RBP	13.73	□□□□□ -0.21
PTCH1-222	ENST00000551425	FNDC1	Q4ZHG4	1894 aa	Predicted RBP	13.73	□□□□□ -0.21
PTCH1-222	ENST00000551425	DOCK5	Q9H7D0	1870 aa		13.73	□□□□□ -0.21
PTCH1-222	ENST00000551425	TPR	P12270	2363 aa	Known RBP	13.73	□□□□□ -0.21
PTCH1-222	ENST00000551425	CEP250	Q9BV73	2442 aa		13.72	□□□□□ -0.21
PTCH1-222	ENST00000551425	WEE2	P0C1S8	567 aa		13.72	□□□□□ -0.21
PTCH1-222	ENST00000551425	FGFR1	P11362	822 aa		13.72	□□□□□ -0.21
PTCH1-222	ENST00000551425	TDG	Q13569	410 aa		13.72	□□□□□ -0.21
PTCH1-222	ENST00000551425	ODR4	Q5SWX8	454 aa		13.72	□□□□□ -0.21
PTCH1-222	ENST00000551425	RARS2	Q5T160	578 aa	Known RBP	13.72	□□□□□ -0.21
PTCH1-222	ENST00000551425	LRRC55	Q6ZSA7	311 aa		13.72	□□□□□ -0.21
PTCH1-222	ENST00000551425	RUBCN	Q92622	972 aa		13.72	□□□□□ -0.21
PTCH1-222	ENST00000551425	ZNF558	Q96NG5	402 aa		13.72	□□□□□ -0.21
PTCH1-222	ENST00000551425	PCYT2	Q99447	389 aa		13.72	□□□□□ -0.21
PTCH1-222	ENST00000551425	TMEM117	Q9H0C3	514 aa		13.72	□□□□□ -0.21
PTCH1-222	ENST00000551425	DZANK1	Q9NVP4	752 aa		13.72	□□□□□ -0.21
PTCH1-222	ENST00000551425	DUSP12	Q9UNI6	340 aa		13.72	□□□□□ -0.21
PTCH1-222	ENST00000551425	NOC2L	Q9Y3T9	749 aa	Known RBP	13.72	□□□□□ -0.21
PTCH1-222	ENST00000551425		R4GN57	208 aa		13.72	□□□□□ -0.21
PTCH1-222	ENST00000551425	ACACB	O00763	2458 aa		13.72	□□□□□ -0.21
PTCH1-222	ENST00000551425	PIK3CD	O00329	1044 aa		13.71	□□□□□ -0.21
PTCH1-222	ENST00000551425	CYTH3	O43739	400 aa		13.71	□□□□□ -0.21
PTCH1-222	ENST00000551425	RPS6KA5	O75582	802 aa		13.71	□□□□□ -0.21
PTCH1-222	ENST00000551425	SEC23A	Q15436	765 aa		13.71	□□□□□ -0.21
PTCH1-222	ENST00000551425	SIX5	Q8N196	739 aa		13.71	□□□□□ -0.21
PTCH1-222	ENST00000551425	TRAPPC12	Q8WVT3	735 aa		13.71	□□□□□ -0.21
PTCH1-222	ENST00000551425	ACSF2	Q96CM8	615 aa	Predicted RBP	13.71	□□□□□ -0.21
PTCH1-222	ENST00000551425	KRT23	Q9C075	422 aa		13.71	□□□□□ -0.21
PTCH1-222	ENST00000551425	SPG21	Q9NZD8	308 aa		13.71	□□□□□ -0.21
PTCH1-222	ENST00000551425	FBXL21	Q9UKT6	434 aa		13.71	□□□□□ -0.21
PTCH1-222	ENST00000551425	GPR182	O15218	404 aa		13.7	□□□□□ -0.22
PTCH1-222	ENST00000551425	HOXA2	O43364	376 aa		13.7	□□□□□ -0.22
PTCH1-222	ENST00000551425	ITGB5	P18084	799 aa		13.7	□□□□□ -0.22
PTCH1-222	ENST00000551425	GRM4	Q14833	912 aa		13.7	□□□□□ -0.22
PTCH1-222	ENST00000551425	PLCB4	Q15147	1175 aa		13.7	□□□□□ -0.22
PTCH1-222	ENST00000551425	ZC3H14	Q6PJT7	736 aa	Known RBP	13.7	□□□□□ -0.22
PTCH1-222	ENST00000551425	MTHFD1L	Q6UB35	978 aa		13.7	□□□□□ -0.22
PTCH1-222	ENST00000551425	LRRC43	Q8N309	656 aa		13.7	□□□□□ -0.22
PTCH1-222	ENST00000551425	C12orf76	Q8N812	135 aa	Predicted RBP	13.7	□□□□□ -0.22
PTCH1-222	ENST00000551425	SMARCC2	Q8TAQ2	1214 aa		13.7	□□□□□ -0.22
PTCH1-222	ENST00000551425	TMEM40	Q8WWA1	233 aa		13.7	□□□□□ -0.22
PTCH1-222	ENST00000551425	CASD1	Q96PB1	797 aa		13.7	□□□□□ -0.22
PTCH1-222	ENST00000551425	HINFP	Q9BQA5	517 aa		13.7	□□□□□ -0.22
PTCH1-222	ENST00000551425	AZI2	Q9H6S1	392 aa		13.7	□□□□□ -0.22
PTCH1-222	ENST00000551425	CNNM2	Q9H8M5	875 aa		13.7	□□□□□ -0.22
PTCH1-222	ENST00000551425	CDHR5	Q9HBB8	845 aa		13.7	□□□□□ -0.22
PTCH1-222	ENST00000551425	ST3GAL5	Q9UNP4	418 aa		13.7	□□□□□ -0.22
PTCH1-222	ENST00000551425	OTOGL	Q3ZCN5	2332 aa		13.7	□□□□□ -0.22
PTCH1-222	ENST00000551425	ZFHX4	Q86UP3	3567 aa		13.69	□□□□□ -0.22
PTCH1-222	ENST00000551425	MEIS2	O14770	477 aa		13.69	□□□□□ -0.22
PTCH1-222	ENST00000551425	PBX3	P40426	434 aa		13.69	□□□□□ -0.22
PTCH1-222	ENST00000551425	PDE1A	P54750	535 aa		13.69	□□□□□ -0.22
PTCH1-222	ENST00000551425	DSC3	Q14574	896 aa		13.69	□□□□□ -0.22
PTCH1-222	ENST00000551425	RSPO4	Q2I0M5	234 aa	Predicted RBP	13.69	□□□□□ -0.22
PTCH1-222	ENST00000551425	KANK3	Q6NY19	840 aa		13.69	□□□□□ -0.22
PTCH1-222	ENST00000551425	USP17L6P	Q6QN14	398 aa		13.69	□□□□□ -0.22
PTCH1-222	ENST00000551425	OTOP3	Q7RTS5	596 aa		13.69	□□□□□ -0.22
PTCH1-222	ENST00000551425	PLPPR4	Q7Z2D5	763 aa		13.69	□□□□□ -0.22
PTCH1-222	ENST00000551425	SLC39A11	Q8N1S5	342 aa		13.69	□□□□□ -0.22
PTCH1-222	ENST00000551425	CUL5	Q93034	780 aa		13.69	□□□□□ -0.22
PTCH1-222	ENST00000551425	KCNK12	Q9HB15	430 aa		13.69	□□□□□ -0.22
PTCH1-222	ENST00000551425	RNF19A	Q9NV58	838 aa		13.69	□□□□□ -0.22

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