RNA–Protein interactions for RNA: ENST00000540166.5

DDB1-217, Transcript of damage specific DNA binding protein 1, humanhuman

TSL 2

Gene DDB1, Length 3,906 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Nucleus, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
DDB1-217ENST00000540166 HOXC10Q9NYD6 342 aa9.46□□□□□ -0.9
DDB1-217ENST00000540166 ARFGEF1Q9Y6D6 1849 aa9.46□□□□□ -0.9
DDB1-217ENST00000540166 CCDC88AQ3V6T2 1871 aa9.46□□□□□ -0.9
DDB1-217ENST00000540166 GPR75-ASB3A0A0A6YYF3 556 aa9.46□□□□□ -0.9
DDB1-217ENST00000540166 USP17L15C9J2P7 530 aa9.46□□□□□ -0.9
DDB1-217ENST00000540166 USP17L13C9JLJ4 530 aa9.46□□□□□ -0.9
DDB1-217ENST00000540166 USP17L11C9JVI0 530 aa9.46□□□□□ -0.9
DDB1-217ENST00000540166 USP17L18D6R9N7 530 aa9.46□□□□□ -0.9
DDB1-217ENST00000540166 USP17L22D6RA61 530 aa9.46□□□□□ -0.9
DDB1-217ENST00000540166 USP17L17D6RBQ6 530 aa9.46□□□□□ -0.9
DDB1-217ENST00000540166 USP17L19D6RCP7 530 aa9.46□□□□□ -0.9
DDB1-217ENST00000540166 USP17L20D6RJB6 530 aa9.46□□□□□ -0.9
DDB1-217ENST00000540166 TLR2O60603 784 aa9.46□□□□□ -0.9
DDB1-217ENST00000540166 EPB41P11171 864 aaKnown RBP9.46□□□□□ -0.9
DDB1-217ENST00000540166 FGFR2P21802 821 aa9.46□□□□□ -0.9
DDB1-217ENST00000540166 UBA7P41226 1012 aa9.46□□□□□ -0.9
DDB1-217ENST00000540166 STAT6P42226 847 aa9.46□□□□□ -0.9
DDB1-217ENST00000540166 AMPD2Q01433 879 aa9.46□□□□□ -0.9
DDB1-217ENST00000540166 USP17L24Q0WX57 530 aa9.46□□□□□ -0.9
DDB1-217ENST00000540166 UBE3CQ15386 1083 aa9.46□□□□□ -0.9
DDB1-217ENST00000540166 ANKRD20A8PQ5CZ79 823 aa9.46□□□□□ -0.9
DDB1-217ENST00000540166 THEMIS2Q5TEJ8 643 aa9.46□□□□□ -0.9
DDB1-217ENST00000540166 HOMEZQ8IX15 550 aa9.46□□□□□ -0.9
DDB1-217ENST00000540166 MMGT1Q8N4V1 131 aa9.46□□□□□ -0.9
DDB1-217ENST00000540166 BRI3BPQ8WY22 251 aa9.46□□□□□ -0.9
DDB1-217ENST00000540166 OSBPL1AQ9BXW6 950 aa9.46□□□□□ -0.9
DDB1-217ENST00000540166 TRIM7Q9C029 511 aa9.46□□□□□ -0.9
DDB1-217ENST00000540166 FOXP1Q9H334 677 aaPredicted RBP9.46□□□□□ -0.9
DDB1-217ENST00000540166 NHEJ1Q9H9Q4 299 aaPredicted RBP9.46□□□□□ -0.9
DDB1-217ENST00000540166 PIH1D3Q9NQM4 214 aaKnown RBP9.46□□□□□ -0.9
DDB1-217ENST00000540166 SNX12Q9UMY4 172 aa9.46□□□□□ -0.9
DDB1-217ENST00000540166 SRPRBQ9Y5M8 271 aaKnown RBP9.46□□□□□ -0.9
DDB1-217ENST00000540166 GRIN2DO15399 1336 aa9.46□□□□□ -0.9
DDB1-217ENST00000540166 B4DLN1 442 aa9.45□□□□□ -0.9
DDB1-217ENST00000540166 EVI5O60447 810 aa9.45□□□□□ -0.9
DDB1-217ENST00000540166 MOCS3O95396 460 aa9.45□□□□□ -0.9
DDB1-217ENST00000540166 GNRH1P01148 92 aa9.45□□□□□ -0.9
DDB1-217ENST00000540166 DNM2P50570 870 aa9.45□□□□□ -0.9
DDB1-217ENST00000540166 RNF10Q8N5U6 811 aaKnown RBP9.45□□□□□ -0.9
DDB1-217ENST00000540166 DDX55Q8NHQ9 600 aaKnown RBP eCLIP9.45□□□□□ -0.93e-20■□□□□ 9.2
DDB1-217ENST00000540166 EEF2KMTQ96G04 330 aa9.45□□□□□ -0.9
DDB1-217ENST00000540166 NEDD4P46934 1319 aa9.45□□□□□ -0.9
DDB1-217ENST00000540166 ITIH6Q6UXX5 1313 aa9.45□□□□□ -0.9
DDB1-217ENST00000540166 CFAP73A6NFT4 308 aa9.45□□□□□ -0.9
DDB1-217ENST00000540166 USP17L12C9JPN9 530 aa9.45□□□□□ -0.9
DDB1-217ENST00000540166 USP17L21D6R901 530 aa9.45□□□□□ -0.9
DDB1-217ENST00000540166 MARCH6O60337 910 aa9.45□□□□□ -0.9
DDB1-217ENST00000540166 CDC25CP30307 473 aa9.45□□□□□ -0.9
DDB1-217ENST00000540166 GRIK5Q16478 980 aa9.45□□□□□ -0.9
DDB1-217ENST00000540166 OTOP1Q7RTM1 612 aa9.45□□□□□ -0.9
DDB1-217ENST00000540166 CCDC155Q8N6L0 562 aa9.45□□□□□ -0.9
DDB1-217ENST00000540166 OXER1Q8TDS5 423 aa9.45□□□□□ -0.9
DDB1-217ENST00000540166 SDR42E1Q8WUS8 393 aa9.45□□□□□ -0.9
DDB1-217ENST00000540166 PAPOLBQ9NRJ5 636 aaKnown RBP9.45□□□□□ -0.9
DDB1-217ENST00000540166 G3BP2Q9UN86 482 aaKnown RBP9.45□□□□□ -0.9
DDB1-217ENST00000540166 C15orf41Q9Y2V0 281 aa9.45□□□□□ -0.9
DDB1-217ENST00000540166 PRKAB2O43741 272 aa9.45□□□□□ -0.9
DDB1-217ENST00000540166 PAPOLAP51003 745 aaKnown RBP9.45□□□□□ -0.9
DDB1-217ENST00000540166 PPP2R2AP63151 447 aa9.45□□□□□ -0.9
DDB1-217ENST00000540166 LAMB3Q13751 1172 aa9.45□□□□□ -0.9
DDB1-217ENST00000540166 TTC38Q5R3I4 469 aa9.45□□□□□ -0.9
DDB1-217ENST00000540166 NFRKBQ6P4R8 1299 aa9.45□□□□□ -0.9
DDB1-217ENST00000540166 ANKRD23Q86SG2 305 aa9.45□□□□□ -0.9
DDB1-217ENST00000540166 HOOK3Q86VS8 718 aa9.45□□□□□ -0.9
DDB1-217ENST00000540166 SPICE1Q8N0Z3 855 aa9.45□□□□□ -0.9
DDB1-217ENST00000540166 TSEN2Q8NCE0 465 aaKnown RBP9.45□□□□□ -0.9
DDB1-217ENST00000540166 SH3TC2Q8TF17 1288 aa9.45□□□□□ -0.9
DDB1-217ENST00000540166 HDAC7Q8WUI4 952 aa9.45□□□□□ -0.9
DDB1-217ENST00000540166 LY9Q9HBG7 655 aa9.45□□□□□ -0.9
DDB1-217ENST00000540166 HMX1Q9NP08 348 aaPredicted RBP9.45□□□□□ -0.9
DDB1-217ENST00000540166 L3MBTL1Q9Y468 752 aa9.45□□□□□ -0.9
DDB1-217ENST00000540166 TNRC6CQ9HCJ0 1690 aaKnown RBP9.45□□□□□ -0.9
DDB1-217ENST00000540166 LAMB4A4D0S4 1761 aa9.45□□□□□ -0.9
DDB1-217ENST00000540166 PHF20L1A8MW92 1017 aa9.44□□□□□ -0.9
DDB1-217ENST00000540166 BUB1O43683 1085 aa9.44□□□□□ -0.9
DDB1-217ENST00000540166 TMOD1P28289 359 aa9.44□□□□□ -0.9
DDB1-217ENST00000540166 CAP2P40123 477 aa9.44□□□□□ -0.9
DDB1-217ENST00000540166 LIFRP42702 1097 aa9.44□□□□□ -0.9
DDB1-217ENST00000540166 BIRC3Q13489 604 aa9.44□□□□□ -0.9
DDB1-217ENST00000540166 DBN1Q16643 649 aa9.44□□□□□ -0.9
DDB1-217ENST00000540166 TCP11X2Q5H9J9 407 aa9.44□□□□□ -0.9
DDB1-217ENST00000540166 PIK3AP1Q6ZUJ8 805 aa9.44□□□□□ -0.9
DDB1-217ENST00000540166 UBR2Q8IWV8 1755 aa9.44□□□□□ -0.9
DDB1-217ENST00000540166 NOC4LQ9BVI4 516 aaKnown RBP9.44□□□□□ -0.9
DDB1-217ENST00000540166 GGA2Q9UJY4 613 aa9.44□□□□□ -0.9
DDB1-217ENST00000540166 CCDC194A0A1B0GVG4 234 aa9.44□□□□□ -0.9
DDB1-217ENST00000540166 OPLAHO14841 1288 aa9.44□□□□□ -0.9
DDB1-217ENST00000540166 CARSP49589 748 aaKnown RBP9.44□□□□□ -0.9
DDB1-217ENST00000540166 SNX1Q13596 522 aa9.44□□□□□ -0.9
DDB1-217ENST00000540166 BRDTQ58F21 947 aaPredicted RBP9.44□□□□□ -0.9
DDB1-217ENST00000540166 ZNF513Q8N8E2 541 aaPredicted RBP9.44□□□□□ -0.9
DDB1-217ENST00000540166 MAGEC3Q8TD91 643 aa9.44□□□□□ -0.9
DDB1-217ENST00000540166 KCNV2Q8TDN2 545 aa9.44□□□□□ -0.9
DDB1-217ENST00000540166 STRBPQ96SI9 672 aaKnown RBP9.44□□□□□ -0.9
DDB1-217ENST00000540166 TCEAL9Q9UHQ7 104 aa9.44□□□□□ -0.9
DDB1-217ENST00000540166 DDTLA6NHG4 134 aaPredicted RBP9.44□□□□□ -0.9
DDB1-217ENST00000540166 STXBP3O00186 592 aa9.44□□□□□ -0.9
DDB1-217ENST00000540166 PARP1P09874 1014 aaKnown RBP9.44□□□□□ -0.9
DDB1-217ENST00000540166 PTPRAP18433 802 aa9.44□□□□□ -0.9
DDB1-217ENST00000540166 BMP6P22004 513 aa9.44□□□□□ -0.9
Retrieved 100 of 20,778 RNA–protein pairs in 21.9 ms