RNA–Protein interactions for RNA: ENST00000538933.1

CLSTN3-208, Transcript of calsyntenin 3, humanhuman

TSL 3

Gene CLSTN3, Length 583 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLSTN3-208ENST00000538933 ZNF274Q96GC6 653 aaPredicted RBP14.27□□□□□ -0.13
CLSTN3-208ENST00000538933 GPR20Q99678 358 aa14.27□□□□□ -0.13
CLSTN3-208ENST00000538933 SENP2Q9HC62 589 aa14.27□□□□□ -0.13
CLSTN3-208ENST00000538933 BRPF3Q9ULD4 1205 aa14.27□□□□□ -0.13
CLSTN3-208ENST00000538933 TPCN1Q9ULQ1 816 aa14.27□□□□□ -0.13
CLSTN3-208ENST00000538933 SORCS3Q9UPU3 1222 aa14.27□□□□□ -0.13
CLSTN3-208ENST00000538933 CACNA1GO43497 2377 aa14.27□□□□□ -0.13
CLSTN3-208ENST00000538933 CHD8Q9HCK8 2581 aa14.26□□□□□ -0.13
CLSTN3-208ENST00000538933 CCDC196A0A1B0GTZ2 297 aa14.26□□□□□ -0.13
CLSTN3-208ENST00000538933 PPFIA3O75145 1194 aa14.26□□□□□ -0.13
CLSTN3-208ENST00000538933 RXRAP19793 462 aa14.26□□□□□ -0.13
CLSTN3-208ENST00000538933 KIF5BP33176 963 aa14.26□□□□□ -0.13
CLSTN3-208ENST00000538933 GATMP50440 423 aa14.26□□□□□ -0.13
CLSTN3-208ENST00000538933 CLCN5P51795 746 aa14.26□□□□□ -0.13
CLSTN3-208ENST00000538933 ERVFC1P60507 584 aa14.26□□□□□ -0.13
CLSTN3-208ENST00000538933 CCT2P78371 535 aaKnown RBP14.26□□□□□ -0.13
CLSTN3-208ENST00000538933 RTN1Q16799 776 aa14.26□□□□□ -0.13
CLSTN3-208ENST00000538933 MCTP2Q6DN12 878 aa14.26□□□□□ -0.13
CLSTN3-208ENST00000538933 ANKRD54Q6NXT1 300 aa14.26□□□□□ -0.13
CLSTN3-208ENST00000538933 TMX3Q96JJ7 454 aa14.26□□□□□ -0.13
CLSTN3-208ENST00000538933 CDCA3Q99618 268 aaPredicted RBP14.26□□□□□ -0.13
CLSTN3-208ENST00000538933 MYL10Q9BUA6 226 aa14.26□□□□□ -0.13
CLSTN3-208ENST00000538933 MAP3K20Q9NYL2 800 aaKnown RBP14.26□□□□□ -0.13
CLSTN3-208ENST00000538933 SPTBN2O15020 2390 aa14.25□□□□□ -0.13
CLSTN3-208ENST00000538933 NRCAMQ92823 1304 aa14.25□□□□□ -0.13
CLSTN3-208ENST00000538933 FSCN2O14926 492 aa14.25□□□□□ -0.13
CLSTN3-208ENST00000538933 PPP1R11O60927 126 aaPredicted RBP14.25□□□□□ -0.13
CLSTN3-208ENST00000538933 PARP1P09874 1014 aaKnown RBP14.25□□□□□ -0.13
CLSTN3-208ENST00000538933 PDIA3P30101 505 aaKnown RBP14.25□□□□□ -0.13
CLSTN3-208ENST00000538933 RCAN1P53805 252 aa14.25□□□□□ -0.13
CLSTN3-208ENST00000538933 UBE3AQ05086 875 aa14.25□□□□□ -0.13
CLSTN3-208ENST00000538933 SEMA3FQ13275 785 aa14.25□□□□□ -0.13
CLSTN3-208ENST00000538933 MTMR3Q13615 1198 aa14.25□□□□□ -0.13
CLSTN3-208ENST00000538933 ME3Q16798 604 aa14.25□□□□□ -0.13
CLSTN3-208ENST00000538933 PAN2Q504Q3 1202 aaKnown RBP14.25□□□□□ -0.13
CLSTN3-208ENST00000538933 TAF2Q6P1X5 1199 aa14.25□□□□□ -0.13
CLSTN3-208ENST00000538933 TSHZ1Q6ZSZ6 1077 aa14.25□□□□□ -0.13
CLSTN3-208ENST00000538933 ZBTB33Q86T24 672 aa14.25□□□□□ -0.13
CLSTN3-208ENST00000538933 NPAS4Q8IUM7 802 aa14.25□□□□□ -0.13
CLSTN3-208ENST00000538933 CCDC83Q8IWF9 413 aa14.25□□□□□ -0.13
CLSTN3-208ENST00000538933 RASGRP4Q8TDF6 673 aa14.25□□□□□ -0.13
CLSTN3-208ENST00000538933 RBM28Q9NW13 759 aaKnown RBP14.25□□□□□ -0.13
CLSTN3-208ENST00000538933 CDH22Q9UJ99 828 aa14.25□□□□□ -0.13
CLSTN3-208ENST00000538933 SPATA31C2B4DYI2 1134 aa14.24□□□□□ -0.13
CLSTN3-208ENST00000538933 SP100P23497 879 aaPredicted RBP14.24□□□□□ -0.13
CLSTN3-208ENST00000538933 HOXA13P31271 388 aaPredicted RBP14.24□□□□□ -0.13
CLSTN3-208ENST00000538933 CD52P31358 61 aa14.24□□□□□ -0.13
CLSTN3-208ENST00000538933 EVCP57679 992 aa14.24□□□□□ -0.13
CLSTN3-208ENST00000538933 MRPS9P82933 396 aaKnown RBP14.24□□□□□ -0.13
CLSTN3-208ENST00000538933 MARCH8Q5T0T0 291 aa14.24□□□□□ -0.13
CLSTN3-208ENST00000538933 METTL7BQ6UX53 244 aa14.24□□□□□ -0.13
CLSTN3-208ENST00000538933 CYFIP1Q7L576 1253 aa14.24□□□□□ -0.13
CLSTN3-208ENST00000538933 NECAB1Q8N987 351 aa14.24□□□□□ -0.13
CLSTN3-208ENST00000538933 MICAL1Q8TDZ2 1067 aa14.24□□□□□ -0.13
CLSTN3-208ENST00000538933 MTMR8Q96EF0 704 aa14.24□□□□□ -0.13
CLSTN3-208ENST00000538933 VAT1LQ9HCJ6 419 aa14.24□□□□□ -0.13
CLSTN3-208ENST00000538933 ZSCAN21Q9Y5A6 473 aaPredicted RBP14.24□□□□□ -0.13
CLSTN3-208ENST00000538933 BAZ2BQ9UIF8 2168 aaKnown RBP14.23□□□□□ -0.13
CLSTN3-208ENST00000538933 FSD2A1L4K1 749 aa14.23□□□□□ -0.13
CLSTN3-208ENST00000538933 MBLAC1A4D2B0 266 aaPredicted RBP14.23□□□□□ -0.13
CLSTN3-208ENST00000538933 C2CD4DB7Z1M9 353 aa14.23□□□□□ -0.13
CLSTN3-208ENST00000538933 NOP56O00567 594 aaKnown RBP14.23□□□□□ -0.13
CLSTN3-208ENST00000538933 PFKFB2O60825 505 aa14.23□□□□□ -0.13
CLSTN3-208ENST00000538933 CDKL5O76039 1030 aa14.23□□□□□ -0.13
CLSTN3-208ENST00000538933 LARGE1O95461 756 aa14.23□□□□□ -0.13
CLSTN3-208ENST00000538933 CCND2P30279 289 aa14.23□□□□□ -0.13
CLSTN3-208ENST00000538933 TECP42680 631 aa14.23□□□□□ -0.13
CLSTN3-208ENST00000538933 GNAQP50148 359 aa14.23□□□□□ -0.13
CLSTN3-208ENST00000538933 ASPRV1Q53RT3 343 aa14.23□□□□□ -0.13
CLSTN3-208ENST00000538933 SAMD3Q8N6K7 520 aa14.23□□□□□ -0.13
CLSTN3-208ENST00000538933 FANCBQ8NB91 859 aa14.23□□□□□ -0.13
CLSTN3-208ENST00000538933 SPRYD3Q8NCJ5 442 aa14.23□□□□□ -0.13
CLSTN3-208ENST00000538933 DNAJB3Q8WWF6 145 aa14.23□□□□□ -0.13
CLSTN3-208ENST00000538933 GTF3C6Q969F1 213 aa14.23□□□□□ -0.13
CLSTN3-208ENST00000538933 INPP4AQ96PE3 977 aaPredicted RBP14.23□□□□□ -0.13
CLSTN3-208ENST00000538933 APOL5Q9BWW9 433 aa14.23□□□□□ -0.13
CLSTN3-208ENST00000538933 AMNQ9BXJ7 453 aa14.23□□□□□ -0.13
CLSTN3-208ENST00000538933 CDY2AQ9Y6F7 541 aa14.23□□□□□ -0.13
CLSTN3-208ENST00000538933 MAP1BP46821 2468 aaKnown RBP14.23□□□□□ -0.13
CLSTN3-208ENST00000538933 USP24Q9UPU5 2620 aa14.23□□□□□ -0.13
CLSTN3-208ENST00000538933 FANCMQ8IYD8 2048 aa14.22□□□□□ -0.13
CLSTN3-208ENST00000538933 PI15O43692 258 aa14.22□□□□□ -0.13
CLSTN3-208ENST00000538933 FGF18O76093 207 aa14.22□□□□□ -0.13
CLSTN3-208ENST00000538933 NPR3P17342 541 aa14.22□□□□□ -0.13
CLSTN3-208ENST00000538933 HOXB8P17481 243 aaPredicted RBP14.22□□□□□ -0.13
CLSTN3-208ENST00000538933 AKAP17AQ02040 695 aaKnown RBP14.22□□□□□ -0.13
CLSTN3-208ENST00000538933 SCRN1Q12765 414 aa14.22□□□□□ -0.13
CLSTN3-208ENST00000538933 NEDD9Q14511 834 aa14.22□□□□□ -0.13
CLSTN3-208ENST00000538933 GRM4Q14833 912 aa14.22□□□□□ -0.13
CLSTN3-208ENST00000538933 UTP14CQ5TAP6 766 aaKnown RBP14.22□□□□□ -0.13
CLSTN3-208ENST00000538933 CWF19L1Q69YN2 538 aaKnown RBP14.22□□□□□ -0.13
CLSTN3-208ENST00000538933 PDE12Q6L8Q7 609 aaKnown RBP14.22□□□□□ -0.13
CLSTN3-208ENST00000538933 DGLUCYQ7Z3D6 616 aa14.22□□□□□ -0.13
CLSTN3-208ENST00000538933 MAP3K14Q99558 947 aa14.22□□□□□ -0.13
CLSTN3-208ENST00000538933 FTHL17Q9BXU8 183 aa14.22□□□□□ -0.13
CLSTN3-208ENST00000538933 TMX1Q9H3N1 280 aa14.22□□□□□ -0.13
CLSTN3-208ENST00000538933 NCOA5Q9HCD5 579 aaKnown RBP14.22□□□□□ -0.13
CLSTN3-208ENST00000538933 FOXD4L1Q9NU39 408 aa14.22□□□□□ -0.13
CLSTN3-208ENST00000538933 ZNF215Q9UL58 517 aaPredicted RBP14.22□□□□□ -0.13
CLSTN3-208ENST00000538933 NR2E1Q9Y466 385 aa14.22□□□□□ -0.13
Retrieved 100 of 20,778 RNA–protein pairs in 19.3 ms