RNA–Protein interactions for RNA: ENST00000534296.5

CD44-238, Transcript of CD44 molecule (Indian blood group), human

TSL 3

Gene CD44, Length 863 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
CD44-238	ENST00000534296	NIM1K	Q8IY84	436 aa		4.03	□□□□□ -1.76
CD44-238	ENST00000534296	ZZZ3	Q8IYH5	903 aa		4.03	□□□□□ -1.76
CD44-238	ENST00000534296	TTC9B	Q8N6N2	239 aa		4.03	□□□□□ -1.76
CD44-238	ENST00000534296	DLG3	Q92796	817 aa		4.03	□□□□□ -1.76
CD44-238	ENST00000534296	MBD6	Q96DN6	1003 aa		4.03	□□□□□ -1.76
CD44-238	ENST00000534296	MFSD3	Q96ES6	412 aa		4.03	□□□□□ -1.76
CD44-238	ENST00000534296	CLUHP3	Q96NS8	147 aa		4.03	□□□□□ -1.76
CD44-238	ENST00000534296	SAMD11	Q96NU1	681 aa		4.03	□□□□□ -1.76
CD44-238	ENST00000534296	FOXB1	Q99853	325 aa		4.03	□□□□□ -1.76
CD44-238	ENST00000534296	KATNBL1	Q9H079	304 aa		4.03	□□□□□ -1.76
CD44-238	ENST00000534296	SEC61A2	Q9H9S3	476 aa		4.03	□□□□□ -1.76
CD44-238	ENST00000534296	MSL2	Q9HCI7	577 aa		4.03	□□□□□ -1.76
CD44-238	ENST00000534296	IFT57	Q9NWB7	429 aa		4.03	□□□□□ -1.76
CD44-238	ENST00000534296	BTBD7	Q9P203	1132 aa		4.03	□□□□□ -1.76
CD44-238	ENST00000534296	MRPL42	Q9Y6G3	142 aa	Known RBP	4.03	□□□□□ -1.76
CD44-238	ENST00000534296	SLC4A7	Q9Y6M7	1214 aa		4.03	□□□□□ -1.76
CD44-238	ENST00000534296		A0A0G2JNJ9	132 aa		4.02	□□□□□ -1.77
CD44-238	ENST00000534296	UBA6	A0AVT1	1052 aa	Predicted RBP	4.02	□□□□□ -1.77
CD44-238	ENST00000534296	CBX4	O00257	560 aa		4.02	□□□□□ -1.77
CD44-238	ENST00000534296	ADRB1	P08588	477 aa		4.02	□□□□□ -1.77
CD44-238	ENST00000534296	KCNA6	P17658	529 aa		4.02	□□□□□ -1.77
CD44-238	ENST00000534296	CSF2RB	P32927	897 aa		4.02	□□□□□ -1.77
CD44-238	ENST00000534296	ADCY8	P40145	1251 aa		4.02	□□□□□ -1.77
CD44-238	ENST00000534296	MECP2	P51608	486 aa	Known RBP	4.02	□□□□□ -1.77
CD44-238	ENST00000534296	KCNQ1	P51787	676 aa		4.02	□□□□□ -1.77
CD44-238	ENST00000534296	SESN2	P58004	480 aa	Predicted RBP	4.02	□□□□□ -1.77
CD44-238	ENST00000534296	RAC3	P60763	192 aa		4.02	□□□□□ -1.77
CD44-238	ENST00000534296	ADCY1	Q08828	1119 aa		4.02	□□□□□ -1.77
CD44-238	ENST00000534296	TOP3A	Q13472	1001 aa	Predicted RBP	4.02	□□□□□ -1.77
CD44-238	ENST00000534296	STIL	Q15468	1287 aa		4.02	□□□□□ -1.77
CD44-238	ENST00000534296	HS1BP3	Q53T59	392 aa		4.02	□□□□□ -1.77
CD44-238	ENST00000534296	TIGD7	Q6NT04	549 aa	Predicted RBP	4.02	□□□□□ -1.77
CD44-238	ENST00000534296	CNNM4	Q6P4Q7	775 aa		4.02	□□□□□ -1.77
CD44-238	ENST00000534296	GPR155	Q7Z3F1	870 aa		4.02	□□□□□ -1.77
CD44-238	ENST00000534296	LRRTM3	Q86VH5	581 aa		4.02	□□□□□ -1.77
CD44-238	ENST00000534296	KIAA1958	Q8N8K9	716 aa		4.02	□□□□□ -1.77
CD44-238	ENST00000534296	RPGR	Q92834	1020 aa	Known RBP	4.02	□□□□□ -1.77
CD44-238	ENST00000534296	LMF1	Q96S06	567 aa		4.02	□□□□□ -1.77
CD44-238	ENST00000534296	ZDHHC5	Q9C0B5	715 aa		4.02	□□□□□ -1.77
CD44-238	ENST00000534296	KANSL2	Q9H9L4	492 aa		4.02	□□□□□ -1.77
CD44-238	ENST00000534296	XPO5	Q9HAV4	1204 aa	Known RBP eCLIP	4.02	□□□□□ -1.77
CD44-238	ENST00000534296	SMPD4	Q9NXE4	827 aa		4.02	□□□□□ -1.77
CD44-238	ENST00000534296	B4GALT6	Q9UBX8	382 aa		4.02	□□□□□ -1.77
CD44-238	ENST00000534296		Q9UFV3	132 aa		4.02	□□□□□ -1.77
CD44-238	ENST00000534296	GOLGA6L22	H0YM25	854 aa		4.01	□□□□□ -1.77
CD44-238	ENST00000534296	ENPP3	O14638	875 aa		4.01	□□□□□ -1.77
CD44-238	ENST00000534296	KPNA6	O60684	536 aa		4.01	□□□□□ -1.77
CD44-238	ENST00000534296	MAF	O75444	373 aa	Predicted RBP	4.01	□□□□□ -1.77
CD44-238	ENST00000534296	SDS	P20132	328 aa		4.01	□□□□□ -1.77
CD44-238	ENST00000534296	SCNN1B	P51168	640 aa		4.01	□□□□□ -1.77
CD44-238	ENST00000534296	RRAD	P55042	308 aa		4.01	□□□□□ -1.77
CD44-238	ENST00000534296	ALDH6A1	Q02252	535 aa	Known RBP	4.01	□□□□□ -1.77
CD44-238	ENST00000534296	EFEMP1	Q12805	493 aa		4.01	□□□□□ -1.77
CD44-238	ENST00000534296	SEC23A	Q15436	765 aa		4.01	□□□□□ -1.77
CD44-238	ENST00000534296	SKOR2	Q2VWA4	1001 aa	Predicted RBP	4.01	□□□□□ -1.77
CD44-238	ENST00000534296	TTC38	Q5R3I4	469 aa		4.01	□□□□□ -1.77
CD44-238	ENST00000534296	CATSPERE	Q5SY80	951 aa		4.01	□□□□□ -1.77
CD44-238	ENST00000534296	SLFN12L	Q6IEE8	588 aa		4.01	□□□□□ -1.77
CD44-238	ENST00000534296	C11orf74	Q86VG3	221 aa		4.01	□□□□□ -1.77
CD44-238	ENST00000534296	C7orf31	Q8N865	590 aa		4.01	□□□□□ -1.77
CD44-238	ENST00000534296	GIMAP8	Q8ND71	665 aa	Predicted RBP	4.01	□□□□□ -1.77
CD44-238	ENST00000534296	OR2W6P	Q8NHA6	318 aa		4.01	□□□□□ -1.77
CD44-238	ENST00000534296	LPP	Q93052	612 aa		4.01	□□□□□ -1.77
CD44-238	ENST00000534296	TUBGCP5	Q96RT8	1024 aa		4.01	□□□□□ -1.77
CD44-238	ENST00000534296	CDK5RAP1	Q96SZ6	601 aa	Known RBP	4.01	□□□□□ -1.77
CD44-238	ENST00000534296	GPR20	Q99678	358 aa		4.01	□□□□□ -1.77
CD44-238	ENST00000534296	FAM184B	Q9ULE4	1060 aa		4.01	□□□□□ -1.77
CD44-238	ENST00000534296	SYNPO2	Q9UMS6	1093 aa		4.01	□□□□□ -1.77
CD44-238	ENST00000534296	NR2E1	Q9Y466	385 aa		4.01	□□□□□ -1.77
CD44-238	ENST00000534296	TCAF1	Q9Y4C2	921 aa		4.01	□□□□□ -1.77
CD44-238	ENST00000534296	ADAMTS20	P59510	1910 aa		4.01	□□□□□ -1.77
CD44-238	ENST00000534296	H2AFY	O75367	372 aa	Known RBP	4	□□□□□ -1.77
CD44-238	ENST00000534296	ZBTB48	P10074	688 aa	Predicted RBP	4	□□□□□ -1.77
CD44-238	ENST00000534296	CD40	P25942	277 aa		4	□□□□□ -1.77
CD44-238	ENST00000534296	MAGEA10	P43363	369 aa	Predicted RBP	4	□□□□□ -1.77
CD44-238	ENST00000534296	BCAR1	P56945	870 aa		4	□□□□□ -1.77
CD44-238	ENST00000534296	CD83	Q01151	205 aa		4	□□□□□ -1.77
CD44-238	ENST00000534296	SLC6A3	Q01959	620 aa		4	□□□□□ -1.77
CD44-238	ENST00000534296	MOGS	Q13724	837 aa		4	□□□□□ -1.77
CD44-238	ENST00000534296	EIF4H	Q15056	248 aa	Known RBP	4	□□□□□ -1.77
CD44-238	ENST00000534296	EPHA7	Q15375	998 aa		4	□□□□□ -1.77
CD44-238	ENST00000534296	PRAMEF9	Q5VWM5	478 aa		4	□□□□□ -1.77
CD44-238	ENST00000534296	KANK2	Q63ZY3	851 aa		4	□□□□□ -1.77
CD44-238	ENST00000534296	TMEM200B	Q69YZ2	307 aa		4	□□□□□ -1.77
CD44-238	ENST00000534296	DBX2	Q6ZNG2	339 aa		4	□□□□□ -1.77
CD44-238	ENST00000534296	JAZF1	Q86VZ6	243 aa		4	□□□□□ -1.77
CD44-238	ENST00000534296	PHYKPL	Q8IUZ5	450 aa		4	□□□□□ -1.77
CD44-238	ENST00000534296	EFHB	Q8N7U6	833 aa		4	□□□□□ -1.77
CD44-238	ENST00000534296	LRRC37B	Q96QE4	947 aa		4	□□□□□ -1.77
CD44-238	ENST00000534296	ORAI3	Q9BRQ5	295 aa		4	□□□□□ -1.77
CD44-238	ENST00000534296	AMN	Q9BXJ7	453 aa		4	□□□□□ -1.77
CD44-238	ENST00000534296	C12orf65	Q9H3J6	166 aa	Known RBP	4	□□□□□ -1.77
CD44-238	ENST00000534296	SEMA4A	Q9H3S1	761 aa		4	□□□□□ -1.77
CD44-238	ENST00000534296	DEF6	Q9H4E7	631 aa		4	□□□□□ -1.77
CD44-238	ENST00000534296	TOMM22	Q9NS69	142 aa		4	□□□□□ -1.77
CD44-238	ENST00000534296	SAE1	Q9UBE0	346 aa	Predicted RBP	4	□□□□□ -1.77
CD44-238	ENST00000534296	PUF60	Q9UHX1	559 aa	Known RBP	4	□□□□□ -1.77
CD44-238	ENST00000534296	VWA7	Q9Y334	891 aa		4	□□□□□ -1.77
CD44-238	ENST00000534296	SPO11	Q9Y5K1	396 aa		4	□□□□□ -1.77
CD44-238	ENST00000534296	ST20-MTHFS	A0A0A6YYL1	179 aa		3.99	□□□□□ -1.77

Retrieved 100 of 20,778 RNA–protein pairs in 17.8 ms