RNA–Protein interactions for RNA: ENST00000534106.2

CHMP4A-208, Transcript of charged multivesicular body protein 4A, humanhuman

TSL 5

Gene CHMP4A, Length 370 nt, Biotype nonsense mediated decay.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CHMP4A-208ENST00000534106 ZNF112Q9UJU3 913 aa3.79□□□□□ -1.8
CHMP4A-208ENST00000534106 WDFY4Q6ZS81 3184 aa3.79□□□□□ -1.8
CHMP4A-208ENST00000534106 COL1A1P02452 1464 aaPredicted RBP3.79□□□□□ -1.8
CHMP4A-208ENST00000534106 LAMB2P55268 1798 aa3.79□□□□□ -1.8
CHMP4A-208ENST00000534106 KDM3BQ7LBC6 1761 aa3.79□□□□□ -1.8
CHMP4A-208ENST00000534106 LRRC37AA6NMS7 1700 aa3.78□□□□□ -1.8
CHMP4A-208ENST00000534106 FAM205AQ6ZU69 1335 aa3.78□□□□□ -1.8
CHMP4A-208ENST00000534106 NCOR1O75376 2440 aa3.78□□□□□ -1.8
CHMP4A-208ENST00000534106 A0A0G2JLL6 359 aaPredicted RBP3.78□□□□□ -1.8
CHMP4A-208ENST00000534106 TRIM75PA6NK02 468 aa3.78□□□□□ -1.8
CHMP4A-208ENST00000534106 CXCL11O14625 94 aa3.78□□□□□ -1.8
CHMP4A-208ENST00000534106 BRD1O95696 1058 aa3.78□□□□□ -1.8
CHMP4A-208ENST00000534106 HMGCRP04035 888 aa3.78□□□□□ -1.8
CHMP4A-208ENST00000534106 CSF1RP07333 972 aa3.78□□□□□ -1.8
CHMP4A-208ENST00000534106 HSP90B1P14625 803 aaKnown RBP3.78□□□□□ -1.8
CHMP4A-208ENST00000534106 HOXA5P20719 270 aa3.78□□□□□ -1.8
CHMP4A-208ENST00000534106 HIBADHP31937 336 aaKnown RBP3.78□□□□□ -1.8
CHMP4A-208ENST00000534106 TNNI2P48788 182 aa3.78□□□□□ -1.8
CHMP4A-208ENST00000534106 CASP7P55210 303 aa3.78□□□□□ -1.8
CHMP4A-208ENST00000534106 FKBP1AP62942 108 aaKnown RBP3.78□□□□□ -1.8
CHMP4A-208ENST00000534106 TFF2Q03403 129 aa3.78□□□□□ -1.8
CHMP4A-208ENST00000534106 EGR3Q06889 387 aa3.78□□□□□ -1.8
CHMP4A-208ENST00000534106 PDE4BQ07343 736 aa3.78□□□□□ -1.8
CHMP4A-208ENST00000534106 SLC6A19Q695T7 634 aa3.78□□□□□ -1.8
CHMP4A-208ENST00000534106 C15orf52Q6ZUT6 534 aaKnown RBP3.78□□□□□ -1.8
CHMP4A-208ENST00000534106 SV2BQ7L1I2 683 aa3.78□□□□□ -1.8
CHMP4A-208ENST00000534106 ZNF804AQ7Z570 1209 aa3.78□□□□□ -1.8
CHMP4A-208ENST00000534106 PRRT2Q7Z6L0 340 aaPredicted RBP3.78□□□□□ -1.8
CHMP4A-208ENST00000534106 LILRA2Q8N149 483 aa3.78□□□□□ -1.8
CHMP4A-208ENST00000534106 PDZD8Q8NEN9 1154 aa3.78□□□□□ -1.8
CHMP4A-208ENST00000534106 SMCR8Q8TEV9 937 aaPredicted RBP3.78□□□□□ -1.8
CHMP4A-208ENST00000534106 DHX38Q92620 1227 aaKnown RBP3.78□□□□□ -1.8
CHMP4A-208ENST00000534106 ANKS1AQ92625 1134 aa3.78□□□□□ -1.8
CHMP4A-208ENST00000534106 PUS3Q9BZE2 481 aaKnown RBP3.78□□□□□ -1.8
CHMP4A-208ENST00000534106 RNF32Q9H0A6 362 aa3.78□□□□□ -1.8
CHMP4A-208ENST00000534106 PRDM12Q9H4Q4 367 aa3.78□□□□□ -1.8
CHMP4A-208ENST00000534106 BABAM1Q9NWV8 329 aa3.78□□□□□ -1.8
CHMP4A-208ENST00000534106 CHD7Q9P2D1 2997 aa3.78□□□□□ -1.8
CHMP4A-208ENST00000534106 KCNH3Q9ULD8 1083 aa3.78□□□□□ -1.8
CHMP4A-208ENST00000534106 CNOT6Q9ULM6 557 aaKnown RBP3.78□□□□□ -1.8
CHMP4A-208ENST00000534106 ATP11BQ9Y2G3 1177 aa3.78□□□□□ -1.8
CHMP4A-208ENST00000534106 AFG3L2Q9Y4W6 797 aa3.78□□□□□ -1.8
CHMP4A-208ENST00000534106 ANKRD36CQ5JPF3 1778 aa3.78□□□□□ -1.8
CHMP4A-208ENST00000534106 MUC6Q6W4X9 2439 aa3.78□□□□□ -1.81
CHMP4A-208ENST00000534106 MAPK8IP3Q9UPT6 1336 aa3.77□□□□□ -1.81
CHMP4A-208ENST00000534106 ANKRD18BA2A2Z9 1011 aa3.77□□□□□ -1.81
CHMP4A-208ENST00000534106 RBAK-RBAKDNI3L0D1 243 aa3.77□□□□□ -1.81
CHMP4A-208ENST00000534106 KCNQ1P51787 676 aa3.77□□□□□ -1.81
CHMP4A-208ENST00000534106 RTP1P59025 263 aa3.77□□□□□ -1.81
CHMP4A-208ENST00000534106 CHMP4BP1P59074 171 aa3.77□□□□□ -1.81
CHMP4A-208ENST00000534106 MRPS5P82675 430 aaKnown RBP3.77□□□□□ -1.81
CHMP4A-208ENST00000534106 SMAD3P84022 425 aaKnown RBP3.77□□□□□ -1.81
CHMP4A-208ENST00000534106 FOXO4P98177 505 aa3.77□□□□□ -1.81
CHMP4A-208ENST00000534106 SEPT6Q14141 434 aa3.77□□□□□ -1.81
CHMP4A-208ENST00000534106 RRP1BQ14684 758 aaKnown RBP3.77□□□□□ -1.81
CHMP4A-208ENST00000534106 ZNF385BQ569K4 471 aa3.77□□□□□ -1.81
CHMP4A-208ENST00000534106 GJC2Q5T442 439 aaPredicted RBP3.77□□□□□ -1.81
CHMP4A-208ENST00000534106 MAP3K21Q5TCX8 1036 aa3.77□□□□□ -1.81
CHMP4A-208ENST00000534106 ANO1Q5XXA6 986 aa3.77□□□□□ -1.81
CHMP4A-208ENST00000534106 DCAF15Q66K64 600 aa3.77□□□□□ -1.81
CHMP4A-208ENST00000534106 CDC42EP5Q6NZY7 148 aa3.77□□□□□ -1.81
CHMP4A-208ENST00000534106 KSR2Q6VAB6 950 aa3.77□□□□□ -1.81
CHMP4A-208ENST00000534106 FASTKD5Q7L8L6 764 aaKnown RBP3.77□□□□□ -1.81
CHMP4A-208ENST00000534106 TSPYL6Q8N831 410 aa3.77□□□□□ -1.81
CHMP4A-208ENST00000534106 TRPV1Q8NER1 839 aa3.77□□□□□ -1.81
CHMP4A-208ENST00000534106 ATXN2LQ8WWM7 1075 aaKnown RBP3.77□□□□□ -1.81
CHMP4A-208ENST00000534106 GAL3ST3Q96A11 431 aa3.77□□□□□ -1.81
CHMP4A-208ENST00000534106 FERMT2Q96AC1 680 aa3.77□□□□□ -1.81
CHMP4A-208ENST00000534106 TMEM87BQ96K49 555 aa3.77□□□□□ -1.81
CHMP4A-208ENST00000534106 P2RX7Q99572 595 aaKnown RBP3.77□□□□□ -1.81
CHMP4A-208ENST00000534106 CWC22Q9HCG8 908 aaKnown RBP3.77□□□□□ -1.81
CHMP4A-208ENST00000534106 TXNRD2Q9NNW7 524 aa3.77□□□□□ -1.81
CHMP4A-208ENST00000534106 PARD6AQ9NPB6 346 aa3.77□□□□□ -1.81
CHMP4A-208ENST00000534106 FLRT1Q9NZU1 646 aa3.77□□□□□ -1.81
CHMP4A-208ENST00000534106 TJP2Q9UDY2 1190 aa3.77□□□□□ -1.81
CHMP4A-208ENST00000534106 GPR160Q9UJ42 338 aa3.77□□□□□ -1.81
CHMP4A-208ENST00000534106 CEP131Q9UPN4 1083 aa3.77□□□□□ -1.81
CHMP4A-208ENST00000534106 PCDHB5Q9Y5E4 795 aa3.77□□□□□ -1.81
CHMP4A-208ENST00000534106 WDR87Q6ZQQ6 2873 aa3.77□□□□□ -1.81
CHMP4A-208ENST00000534106 DDX60Q8IY21 1712 aaKnown RBP3.76□□□□□ -1.81
CHMP4A-208ENST00000534106 FITM1A5D6W6 292 aa3.76□□□□□ -1.81
CHMP4A-208ENST00000534106 DDTLA6NHG4 134 aaPredicted RBP3.76□□□□□ -1.81
CHMP4A-208ENST00000534106 RFXAPO00287 272 aa3.76□□□□□ -1.81
CHMP4A-208ENST00000534106 MRE11P49959 708 aa3.76□□□□□ -1.81
CHMP4A-208ENST00000534106 DLG4P78352 724 aa3.76□□□□□ -1.81
CHMP4A-208ENST00000534106 KCNA1Q09470 495 aa3.76□□□□□ -1.81
CHMP4A-208ENST00000534106 SPP2Q13103 211 aa3.76□□□□□ -1.81
CHMP4A-208ENST00000534106 GCKRQ14397 625 aa3.76□□□□□ -1.81
CHMP4A-208ENST00000534106 TRIM60Q495X7 471 aa3.76□□□□□ -1.81
CHMP4A-208ENST00000534106 NOL9Q5SY16 702 aaKnown RBP3.76□□□□□ -1.81
CHMP4A-208ENST00000534106 LCE5AQ5TCM9 118 aa3.76□□□□□ -1.81
CHMP4A-208ENST00000534106 TCERG1LQ5VWI1 586 aa3.76□□□□□ -1.81
CHMP4A-208ENST00000534106 LMBR1LQ6UX01 489 aa3.76□□□□□ -1.81
CHMP4A-208ENST00000534106 LDHAL6AQ6ZMR3 332 aa3.76□□□□□ -1.81
CHMP4A-208ENST00000534106 C16orf59Q7L2K0 433 aa3.76□□□□□ -1.81
CHMP4A-208ENST00000534106 FBXO33Q7Z6M2 555 aa3.76□□□□□ -1.81
CHMP4A-208ENST00000534106 FAM83AQ86UY5 434 aa3.76□□□□□ -1.81
CHMP4A-208ENST00000534106 IRF2BP1Q8IU81 584 aa3.76□□□□□ -1.81
CHMP4A-208ENST00000534106 SPPL2CQ8IUH8 684 aa3.76□□□□□ -1.81
CHMP4A-208ENST00000534106 MRPL41Q8IXM3 137 aaKnown RBP3.76□□□□□ -1.81
Retrieved 100 of 20,778 RNA–protein pairs in 33 ms