RNA–Protein interactions for RNA: ENST00000528922.1

CD44-230, Transcript of CD44 molecule (Indian blood group), humanhuman

TSL 5

Gene CD44, Length 1,319 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-230ENST00000528922 PTGS1P23219 599 aa6.64□□□□□ -1.35
CD44-230ENST00000528922 CFPP27918 469 aa6.64□□□□□ -1.35
CD44-230ENST00000528922 LSSP48449 732 aa6.64□□□□□ -1.35
CD44-230ENST00000528922 AFF3P51826 1226 aaKnown RBP6.64□□□□□ -1.35
CD44-230ENST00000528922 AMPD3Q01432 767 aa6.64□□□□□ -1.35
CD44-230ENST00000528922 CAP1Q01518 475 aa6.64□□□□□ -1.35
CD44-230ENST00000528922 VMACQ2NL98 169 aa6.64□□□□□ -1.35
CD44-230ENST00000528922 PRR31Q5SQ13 230 aa6.64□□□□□ -1.35
CD44-230ENST00000528922 PRAMEF18Q5VWM3 479 aa6.64□□□□□ -1.35
CD44-230ENST00000528922 ESRP1Q6NXG1 681 aaKnown RBP6.64□□□□□ -1.35
CD44-230ENST00000528922 C16orf92Q96LL3 132 aa6.64□□□□□ -1.35
CD44-230ENST00000528922 CLIC6Q96NY7 704 aa6.64□□□□□ -1.35
CD44-230ENST00000528922 KRTAP4-12Q9BQ66 201 aa6.64□□□□□ -1.35
CD44-230ENST00000528922 AMNQ9BXJ7 453 aa6.64□□□□□ -1.35
CD44-230ENST00000528922 ARHGAP20Q9P2F6 1191 aa6.64□□□□□ -1.35
CD44-230ENST00000528922 CROTQ9UKG9 612 aa6.64□□□□□ -1.35
CD44-230ENST00000528922 CYP17A1P05093 508 aa6.63□□□□□ -1.35
CD44-230ENST00000528922 FNTBP49356 437 aa6.63□□□□□ -1.35
CD44-230ENST00000528922 MLLT6P55198 1093 aaPredicted RBP6.63□□□□□ -1.35
CD44-230ENST00000528922 SMAD3P84022 425 aaKnown RBP6.63□□□□□ -1.35
CD44-230ENST00000528922 SMAD2Q15796 467 aaKnown RBP6.63□□□□□ -1.35
CD44-230ENST00000528922 LHFPL2Q6ZUX7 228 aa6.63□□□□□ -1.35
CD44-230ENST00000528922 RTN4RL1Q86UN2 441 aaPredicted RBP6.63□□□□□ -1.35
CD44-230ENST00000528922 C1QL4Q86Z23 238 aa6.63□□□□□ -1.35
CD44-230ENST00000528922 TP53I13Q8NBR0 393 aaPredicted RBP6.63□□□□□ -1.35
CD44-230ENST00000528922 HIPK4Q8NE63 616 aa6.63□□□□□ -1.35
CD44-230ENST00000528922 ERCC4Q92889 916 aaPredicted RBP6.63□□□□□ -1.35
CD44-230ENST00000528922 TTC1Q99614 292 aa6.63□□□□□ -1.35
CD44-230ENST00000528922 IFT22Q9H7X7 185 aa6.63□□□□□ -1.35
CD44-230ENST00000528922 ZMAT4Q9H898 229 aa6.63□□□□□ -1.35
CD44-230ENST00000528922 EMC7Q9NPA0 242 aa6.63□□□□□ -1.35
CD44-230ENST00000528922 TOMM22Q9NS69 142 aa6.63□□□□□ -1.35
CD44-230ENST00000528922 ZFP69BQ9UJL9 534 aa6.63□□□□□ -1.35
CD44-230ENST00000528922 ASB1Q9Y576 335 aa6.63□□□□□ -1.35
CD44-230ENST00000528922 CCNB3Q8WWL7 1395 aa6.63□□□□□ -1.35
CD44-230ENST00000528922 DROSHAQ9NRR4 1374 aaKnown RBP eCLIP6.63□□□□□ -1.35
CD44-230ENST00000528922 DBX1A6NMT0 343 aa6.62□□□□□ -1.35
CD44-230ENST00000528922 ZEB2O60315 1214 aa6.62□□□□□ -1.35
CD44-230ENST00000528922 CIAPIN1Q6FI81 312 aa6.62□□□□□ -1.35
CD44-230ENST00000528922 LRSAM1Q6UWE0 723 aa6.62□□□□□ -1.35
CD44-230ENST00000528922 DDX42Q86XP3 938 aaKnown RBP eCLIP6.62□□□□□ -1.35
CD44-230ENST00000528922 STPG3Q8N7X2 389 aa6.62□□□□□ -1.35
CD44-230ENST00000528922 GPATCH3Q96I76 525 aa6.62□□□□□ -1.35
CD44-230ENST00000528922 TACO1Q9BSH4 297 aaKnown RBP6.62□□□□□ -1.35
CD44-230ENST00000528922 INCENPQ9NQS7 918 aa6.62□□□□□ -1.35
CD44-230ENST00000528922 GALNT8Q9NY28 637 aa6.62□□□□□ -1.35
CD44-230ENST00000528922 DHX57Q6P158 1386 aaKnown RBP6.61□□□□□ -1.35
CD44-230ENST00000528922 SH3D21A4FU49 640 aa6.61□□□□□ -1.35
CD44-230ENST00000528922 COL6A1P12109 1028 aa6.61□□□□□ -1.35
CD44-230ENST00000528922 RPL13P26373 211 aaKnown RBP6.61□□□□□ -1.35
CD44-230ENST00000528922 IL13P35225 146 aa6.61□□□□□ -1.35
CD44-230ENST00000528922 OCRLQ01968 901 aa6.61□□□□□ -1.35
CD44-230ENST00000528922 STAT4Q14765 748 aa6.61□□□□□ -1.35
CD44-230ENST00000528922 EPHA7Q15375 998 aa6.61□□□□□ -1.35
CD44-230ENST00000528922 ATP13A4Q4VNC1 1196 aa6.61□□□□□ -1.35
CD44-230ENST00000528922 LRRC56Q8IYG6 542 aaPredicted RBP6.61□□□□□ -1.35
CD44-230ENST00000528922 MS4A5Q9H3V2 200 aa6.61□□□□□ -1.35
CD44-230ENST00000528922 KCND1Q9NSA2 647 aa6.61□□□□□ -1.35
CD44-230ENST00000528922 COL4A3BPQ9Y5P4 624 aa6.61□□□□□ -1.35
CD44-230ENST00000528922 EFCAB5A4FU69 1503 aa6.61□□□□□ -1.35
CD44-230ENST00000528922 CUX1P39880 1505 aa6.61□□□□□ -1.35
CD44-230ENST00000528922 TTBK1Q5TCY1 1321 aaPredicted RBP6.6□□□□□ -1.35
CD44-230ENST00000528922 LCHNA4D1U4 455 aa6.6□□□□□ -1.35
CD44-230ENST00000528922 DDX3XO00571 662 aaKnown RBP eCLIP6.6□□□□□ -1.35
CD44-230ENST00000528922 TTLL7Q6ZT98 887 aa6.6□□□□□ -1.35
CD44-230ENST00000528922 KRTAP1-3Q8IUG1 177 aa6.6□□□□□ -1.35
CD44-230ENST00000528922 PASD1Q8IV76 773 aa6.6□□□□□ -1.35
CD44-230ENST00000528922 TMEM151BQ8IW70 566 aa6.6□□□□□ -1.35
CD44-230ENST00000528922 LINC01356Q8N9X3 169 aa6.6□□□□□ -1.35
CD44-230ENST00000528922 ZCCHC14Q8WYQ9 949 aaKnown RBP6.6□□□□□ -1.35
CD44-230ENST00000528922 RTF1Q92541 710 aaKnown RBP6.6□□□□□ -1.35
CD44-230ENST00000528922 TOX2Q96NM4 488 aa6.6□□□□□ -1.35
CD44-230ENST00000528922 PCDH12Q9NPG4 1184 aa6.6□□□□□ -1.35
CD44-230ENST00000528922 ATP8A1Q9Y2Q0 1164 aa6.6□□□□□ -1.35
CD44-230ENST00000528922 BRINP1O60477 761 aa6.59□□□□□ -1.35
CD44-230ENST00000528922 FBXO21O94952 628 aa6.59□□□□□ -1.35
CD44-230ENST00000528922 KNG1P01042 644 aa6.59□□□□□ -1.35
CD44-230ENST00000528922 ZNF28P17035 718 aa6.59□□□□□ -1.35
CD44-230ENST00000528922 ECE1P42892 770 aa6.59□□□□□ -1.35
CD44-230ENST00000528922 SARSP49591 514 aaKnown RBP6.59□□□□□ -1.35
CD44-230ENST00000528922 IL13RA1P78552 427 aa6.59□□□□□ -1.35
CD44-230ENST00000528922 ALDH6A1Q02252 535 aaKnown RBP6.59□□□□□ -1.35
CD44-230ENST00000528922 LRRC32Q14392 662 aa6.59□□□□□ -1.35
CD44-230ENST00000528922 TERF2Q15554 542 aa6.59□□□□□ -1.35
CD44-230ENST00000528922 PTPROQ16827 1216 aa6.59□□□□□ -1.35
CD44-230ENST00000528922 BROXQ5VW32 411 aa6.59□□□□□ -1.35
CD44-230ENST00000528922 TCERG1LQ5VWI1 586 aa6.59□□□□□ -1.35
CD44-230ENST00000528922 C11orf74Q86VG3 221 aa6.59□□□□□ -1.35
CD44-230ENST00000528922 ATL2Q8NHH9 583 aa6.59□□□□□ -1.35
CD44-230ENST00000528922 SLC5A5Q92911 643 aa6.59□□□□□ -1.35
CD44-230ENST00000528922 WRNIP1Q96S55 665 aa6.59□□□□□ -1.35
CD44-230ENST00000528922 NTMQ9P121 344 aa6.59□□□□□ -1.35
CD44-230ENST00000528922 CUL7Q14999 1698 aa6.58□□□□□ -1.36
CD44-230ENST00000528922 TIAM1Q13009 1591 aa6.58□□□□□ -1.36
CD44-230ENST00000528922 GPR39O43194 453 aa6.58□□□□□ -1.36
CD44-230ENST00000528922 PHC1P78364 1004 aa6.58□□□□□ -1.36
CD44-230ENST00000528922 STILQ15468 1287 aa6.58□□□□□ -1.36
CD44-230ENST00000528922 DDB1Q16531 1140 aa6.58□□□□□ -1.36
CD44-230ENST00000528922 GPR158Q5T848 1215 aa6.58□□□□□ -1.36
CD44-230ENST00000528922 CARFQ8N187 725 aa6.58□□□□□ -1.36
Retrieved 100 of 20,778 RNA–protein pairs in 26.4 ms