RNA–Protein interactions for RNA: ENST00000526271.2

CPSF1-201, Transcript of cleavage and polyadenylation specific factor 1, humanhuman

TSL 3

Gene CPSF1, Length 697 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CPSF1-201ENST00000526271 ANO3Q9BYT9 981 aa16.32■□□□□ 0.2
CPSF1-201ENST00000526271 RIC8AQ9NPQ8 531 aa16.32■□□□□ 0.2
CPSF1-201ENST00000526271 TRPC6Q9Y210 931 aa16.32■□□□□ 0.2
CPSF1-201ENST00000526271 MYO10Q9HD67 2058 aa16.31■□□□□ 0.2
CPSF1-201ENST00000526271 SPDYE3A6NKU9 549 aa16.31■□□□□ 0.2
CPSF1-201ENST00000526271 C9IYK1 514 aa16.31■□□□□ 0.2
CPSF1-201ENST00000526271 PER2O15055 1255 aa16.31■□□□□ 0.2
CPSF1-201ENST00000526271 KLRC1P26715 233 aa16.31■□□□□ 0.2
CPSF1-201ENST00000526271 CDC27P30260 824 aa16.31■□□□□ 0.2
CPSF1-201ENST00000526271 PAK2Q13177 524 aa16.31■□□□□ 0.2
CPSF1-201ENST00000526271 ADCK5Q3MIX3 580 aa16.31■□□□□ 0.2
CPSF1-201ENST00000526271 CEP55Q53EZ4 464 aa16.31■□□□□ 0.2
CPSF1-201ENST00000526271 IER5Q5VY09 327 aa16.31■□□□□ 0.2
CPSF1-201ENST00000526271 RBM23Q86U06 439 aaKnown RBP16.31■□□□□ 0.2
CPSF1-201ENST00000526271 FTHL17Q9BXU8 183 aa16.31■□□□□ 0.2
CPSF1-201ENST00000526271 CWH43Q9H720 699 aa16.31■□□□□ 0.2
CPSF1-201ENST00000526271 CDH22Q9UJ99 828 aa16.31■□□□□ 0.2
CPSF1-201ENST00000526271 USP15Q9Y4E8 981 aaPredicted RBP16.31■□□□□ 0.2
CPSF1-201ENST00000526271 SLC12A7Q9Y666 1083 aa16.31■□□□□ 0.2
CPSF1-201ENST00000526271 DDX39AO00148 427 aaKnown RBP16.3■□□□□ 0.2
CPSF1-201ENST00000526271 FSCN2O14926 492 aa16.3■□□□□ 0.2
CPSF1-201ENST00000526271 PPFIA3O75145 1194 aa16.3■□□□□ 0.2
CPSF1-201ENST00000526271 SREBF1P36956 1147 aa16.3■□□□□ 0.2
CPSF1-201ENST00000526271 SARSP49591 514 aaKnown RBP16.3■□□□□ 0.2
CPSF1-201ENST00000526271 NDUFV1P49821 464 aa16.3■□□□□ 0.2
CPSF1-201ENST00000526271 KRT76Q01546 638 aa16.3■□□□□ 0.2
CPSF1-201ENST00000526271 DSC3Q14574 896 aa16.3■□□□□ 0.2
CPSF1-201ENST00000526271 NAALADL2Q58DX5 795 aa16.3■□□□□ 0.2
CPSF1-201ENST00000526271 LRRC55Q6ZSA7 311 aa16.3■□□□□ 0.2
CPSF1-201ENST00000526271 FAM228AQ86W67 206 aa16.3■□□□□ 0.2
CPSF1-201ENST00000526271 SUSD6Q92537 303 aa16.3■□□□□ 0.2
CPSF1-201ENST00000526271 EDAQ92838 391 aa16.3■□□□□ 0.2
CPSF1-201ENST00000526271 PPP1R16BQ96T49 567 aa16.3■□□□□ 0.2
CPSF1-201ENST00000526271 FAM50BQ9Y247 325 aa16.3■□□□□ 0.2
CPSF1-201ENST00000526271 GPR32O75388 356 aa16.29■□□□□ 0.2
CPSF1-201ENST00000526271 C22orf31O95567 290 aa16.29■□□□□ 0.2
CPSF1-201ENST00000526271 IBSPP21815 317 aaPredicted RBP16.29■□□□□ 0.2
CPSF1-201ENST00000526271 CSPP1Q1MSJ5 1256 aa16.29■□□□□ 0.2
CPSF1-201ENST00000526271 TMTC2Q8N394 836 aa16.29■□□□□ 0.2
CPSF1-201ENST00000526271 LINC01465Q8N7H1 131 aa16.29■□□□□ 0.2
CPSF1-201ENST00000526271 FEZF2Q8TBJ5 459 aa16.29■□□□□ 0.2
CPSF1-201ENST00000526271 ADAM2Q99965 735 aa16.29■□□□□ 0.2
CPSF1-201ENST00000526271 S1PR5Q9H228 398 aa16.29■□□□□ 0.2
CPSF1-201ENST00000526271 ST3GAL5Q9UNP4 418 aa16.29■□□□□ 0.2
CPSF1-201ENST00000526271 V9GY48 417 aaPredicted RBP16.29■□□□□ 0.2
CPSF1-201ENST00000526271 ZFHX2Q9C0A1 2572 aaPredicted RBP16.28■□□□□ 0.2
CPSF1-201ENST00000526271 CALM1P0DP23 149 aa16.28■□□□□ 0.2
CPSF1-201ENST00000526271 CALM2P0DP24 149 aa16.28■□□□□ 0.2
CPSF1-201ENST00000526271 CALM3P0DP25 149 aa16.28■□□□□ 0.2
CPSF1-201ENST00000526271 FGFR1P11362 822 aa16.28■□□□□ 0.2
CPSF1-201ENST00000526271 FAM189BP81408 668 aa16.28■□□□□ 0.2
CPSF1-201ENST00000526271 APOBRQ0VD83 1088 aa16.28■□□□□ 0.2
CPSF1-201ENST00000526271 TCF15Q12870 199 aa16.28■□□□□ 0.2
CPSF1-201ENST00000526271 NFX1Q12986 1120 aaKnown RBP16.28■□□□□ 0.2
CPSF1-201ENST00000526271 BMP8AQ7Z5Y6 402 aa16.28■□□□□ 0.2
CPSF1-201ENST00000526271 AZI2Q9H6S1 392 aa16.28■□□□□ 0.2
CPSF1-201ENST00000526271 RGS18Q9NS28 235 aa16.28■□□□□ 0.2
CPSF1-201ENST00000526271 TYW1Q9NV66 732 aaKnown RBP16.28■□□□□ 0.2
CPSF1-201ENST00000526271 GINS2Q9Y248 185 aa16.28■□□□□ 0.2
CPSF1-201ENST00000526271 PLXNA3P51805 1871 aa16.28■□□□□ 0.2
CPSF1-201ENST00000526271 TBKBP1A7MCY6 615 aa16.27■□□□□ 0.2
CPSF1-201ENST00000526271 FGF18O76093 207 aa16.27■□□□□ 0.2
CPSF1-201ENST00000526271 PBX3P40426 434 aa16.27■□□□□ 0.2
CPSF1-201ENST00000526271 NAPAP54920 295 aa16.27■□□□□ 0.2
CPSF1-201ENST00000526271 ZXDAP98168 799 aa16.27■□□□□ 0.2
CPSF1-201ENST00000526271 DUSP6Q16828 381 aa16.27■□□□□ 0.2
CPSF1-201ENST00000526271 KIZQ2M2Z5 673 aa16.27■□□□□ 0.2
CPSF1-201ENST00000526271 SYCE2Q6PIF2 218 aa16.27■□□□□ 0.2
CPSF1-201ENST00000526271 TRIM67Q6ZTA4 783 aa16.27■□□□□ 0.2
CPSF1-201ENST00000526271 NME8Q8N427 588 aa16.27■□□□□ 0.2
CPSF1-201ENST00000526271 COLGALT1Q8NBJ5 622 aa16.27■□□□□ 0.2
CPSF1-201ENST00000526271 ASIC4Q96FT7 647 aa16.27■□□□□ 0.2
CPSF1-201ENST00000526271 OSMRQ99650 979 aa16.27■□□□□ 0.2
CPSF1-201ENST00000526271 SDF4Q9BRK5 362 aa16.27■□□□□ 0.2
CPSF1-201ENST00000526271 BARHL2Q9NY43 387 aa16.27■□□□□ 0.2
CPSF1-201ENST00000526271 VPS13AQ96RL7 3174 aa16.26■□□□□ 0.19
CPSF1-201ENST00000526271 SMCO2A6NFE2 343 aa16.26■□□□□ 0.19
CPSF1-201ENST00000526271 TMEM221A6NGB7 291 aa16.26■□□□□ 0.19
CPSF1-201ENST00000526271 HIDE1A8MVS5 230 aa16.26■□□□□ 0.19
CPSF1-201ENST00000526271 M0R296 226 aa16.26■□□□□ 0.19
CPSF1-201ENST00000526271 HBP1O60381 514 aa16.26■□□□□ 0.19
CPSF1-201ENST00000526271 RPS6KA5O75582 802 aa16.26■□□□□ 0.19
CPSF1-201ENST00000526271 VTNP04004 478 aa16.26■□□□□ 0.19
CPSF1-201ENST00000526271 RPLP2P05387 115 aaKnown RBP16.26■□□□□ 0.19
CPSF1-201ENST00000526271 STAG3L1P0CL83 205 aa16.26■□□□□ 0.19
CPSF1-201ENST00000526271 ADCY7P51828 1080 aa16.26■□□□□ 0.19
CPSF1-201ENST00000526271 VCPP55072 806 aaKnown RBP16.26■□□□□ 0.19
CPSF1-201ENST00000526271 PKN1Q16512 942 aa16.26■□□□□ 0.19
CPSF1-201ENST00000526271 JAKMIP3Q5VZ66 844 aa16.26■□□□□ 0.19
CPSF1-201ENST00000526271 PPP1R18Q6NYC8 613 aa16.26■□□□□ 0.19
CPSF1-201ENST00000526271 NIPA1Q7RTP0 329 aa16.26■□□□□ 0.19
CPSF1-201ENST00000526271 LENG9Q96B70 501 aa16.26■□□□□ 0.19
CPSF1-201ENST00000526271 CASD1Q96PB1 797 aa16.26■□□□□ 0.19
CPSF1-201ENST00000526271 POP1Q99575 1024 aaKnown RBP16.26■□□□□ 0.19
CPSF1-201ENST00000526271 UPF3BQ9BZI7 483 aaKnown RBP16.26■□□□□ 0.19
CPSF1-201ENST00000526271 KCNH6Q9H252 994 aa16.26■□□□□ 0.19
CPSF1-201ENST00000526271 COL1A2P08123 1366 aa16.26■□□□□ 0.19
CPSF1-201ENST00000526271 SPTBN4Q9H254 2564 aa16.25■□□□□ 0.19
CPSF1-201ENST00000526271 ZNF862O60290 1169 aa16.25■□□□□ 0.19
CPSF1-201ENST00000526271 CYP3A4P08684 503 aa16.25■□□□□ 0.19
Retrieved 100 of 20,778 RNA–protein pairs in 19.9 ms