RNA–Protein interactions for RNA: ENST00000525241.1

CD44-215, Transcript of CD44 molecule (Indian blood group), humanhuman

TSL 2

Gene CD44, Length 440 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-215ENST00000525241 LHFPL2Q6ZUX7 228 aa6.13□□□□□ -1.43
CD44-215ENST00000525241 C11orf74Q86VG3 221 aa6.13□□□□□ -1.43
CD44-215ENST00000525241 NME9Q86XW9 330 aa6.13□□□□□ -1.43
CD44-215ENST00000525241 SIAH1Q8IUQ4 282 aa6.13□□□□□ -1.43
CD44-215ENST00000525241 ZZZ3Q8IYH5 903 aa6.13□□□□□ -1.43
CD44-215ENST00000525241 RTF1Q92541 710 aaKnown RBP6.13□□□□□ -1.43
CD44-215ENST00000525241 E2F7Q96AV8 911 aa6.13□□□□□ -1.43
CD44-215ENST00000525241 YTHDC1Q96MU7 727 aaKnown RBP6.13□□□□□ -1.43
CD44-215ENST00000525241 SPATA25Q9BR10 227 aa6.13□□□□□ -1.43
CD44-215ENST00000525241 KRTAP9-6A0A140TA67 174 aa6.12□□□□□ -1.43
CD44-215ENST00000525241 UBA6A0AVT1 1052 aaPredicted RBP6.12□□□□□ -1.43
CD44-215ENST00000525241 KLHL18O94889 574 aa6.12□□□□□ -1.43
CD44-215ENST00000525241 ADCY1Q08828 1119 aa6.12□□□□□ -1.43
CD44-215ENST00000525241 TTC38Q5R3I4 469 aa6.12□□□□□ -1.43
CD44-215ENST00000525241 MCTP2Q6DN12 878 aa6.12□□□□□ -1.43
CD44-215ENST00000525241 DPP8Q6V1X1 898 aaPredicted RBP6.12□□□□□ -1.43
CD44-215ENST00000525241 ZNF761Q86XN6 746 aaPredicted RBP6.12□□□□□ -1.43
CD44-215ENST00000525241 DDX42Q86XP3 938 aaKnown RBP eCLIP6.12□□□□□ -1.43
CD44-215ENST00000525241 ZNF610Q8N9Z0 462 aa6.12□□□□□ -1.43
CD44-215ENST00000525241 TXNDC5Q8NBS9 432 aaKnown RBP6.12□□□□□ -1.43
CD44-215ENST00000525241 NUDT10Q8NFP7 164 aa6.12□□□□□ -1.43
CD44-215ENST00000525241 ADAMTS17Q8TE56 1095 aa6.12□□□□□ -1.43
CD44-215ENST00000525241 SLC5A5Q92911 643 aa6.12□□□□□ -1.43
CD44-215ENST00000525241 NUDT11Q96G61 164 aa6.12□□□□□ -1.43
CD44-215ENST00000525241 MAML3Q96JK9 1138 aa6.12□□□□□ -1.43
CD44-215ENST00000525241 OR10A5Q9H207 317 aa6.12□□□□□ -1.43
CD44-215ENST00000525241 MS4A5Q9H3V2 200 aa6.12□□□□□ -1.43
CD44-215ENST00000525241 L2HGDHQ9H9P8 463 aa6.12□□□□□ -1.43
CD44-215ENST00000525241 APOBEC2Q9Y235 224 aaKnown RBP6.12□□□□□ -1.43
CD44-215ENST00000525241 ATP8A1Q9Y2Q0 1164 aa6.12□□□□□ -1.43
CD44-215ENST00000525241 H0Y858 1186 aa6.11□□□□□ -1.43
CD44-215ENST00000525241 GPR39O43194 453 aa6.11□□□□□ -1.43
CD44-215ENST00000525241 CPEP16870 476 aa6.11□□□□□ -1.43
CD44-215ENST00000525241 CD40P25942 277 aa6.11□□□□□ -1.43
CD44-215ENST00000525241 LSP1P33241 339 aa6.11□□□□□ -1.43
CD44-215ENST00000525241 RGS3P49796 1198 aa6.11□□□□□ -1.43
CD44-215ENST00000525241 SLC6A3Q01959 620 aa6.11□□□□□ -1.43
CD44-215ENST00000525241 DDB1Q16531 1140 aa6.11□□□□□ -1.43
CD44-215ENST00000525241 KRTAP19-4Q3LI73 84 aa6.11□□□□□ -1.43
CD44-215ENST00000525241 FAM26FQ5R3K3 315 aa6.11□□□□□ -1.43
CD44-215ENST00000525241 BROXQ5VW32 411 aa6.11□□□□□ -1.43
CD44-215ENST00000525241 CXXC5Q7LFL8 322 aaKnown RBP6.11□□□□□ -1.43
CD44-215ENST00000525241 MARCH10Q8NA82 808 aaPredicted RBP6.11□□□□□ -1.43
CD44-215ENST00000525241 CALML6Q8TD86 181 aa6.11□□□□□ -1.43
CD44-215ENST00000525241 ZNF496Q96IT1 587 aaPredicted RBP6.11□□□□□ -1.43
CD44-215ENST00000525241 SEMA4AQ9H3S1 761 aa6.11□□□□□ -1.43
CD44-215ENST00000525241 LUC7LQ9NQ29 371 aaKnown RBP6.11□□□□□ -1.43
CD44-215ENST00000525241 LCHNA4D1U4 455 aa6.1□□□□□ -1.43
CD44-215ENST00000525241 KCNC1P48547 511 aa6.1□□□□□ -1.43
CD44-215ENST00000525241 CD83Q01151 205 aa6.1□□□□□ -1.43
CD44-215ENST00000525241 ROM1Q03395 351 aa6.1□□□□□ -1.43
CD44-215ENST00000525241 MYBPC3Q14896 1274 aa6.1□□□□□ -1.43
CD44-215ENST00000525241 RGL3Q3MIN7 710 aa6.1□□□□□ -1.43
CD44-215ENST00000525241 WDR72Q3MJ13 1102 aa6.1□□□□□ -1.43
CD44-215ENST00000525241 SLFN12LQ6IEE8 588 aa6.1□□□□□ -1.43
CD44-215ENST00000525241 ATL2Q8NHH9 583 aa6.1□□□□□ -1.43
CD44-215ENST00000525241 WDR66Q8TBY9 1149 aa6.1□□□□□ -1.43
CD44-215ENST00000525241 GPATCH3Q96I76 525 aa6.1□□□□□ -1.43
CD44-215ENST00000525241 TUBGCP5Q96RT8 1024 aa6.1□□□□□ -1.43
CD44-215ENST00000525241 TMEM168Q9H0V1 697 aa6.1□□□□□ -1.43
CD44-215ENST00000525241 PCDH12Q9NPG4 1184 aa6.1□□□□□ -1.43
CD44-215ENST00000525241 FTSJ1Q9UET6 329 aa6.1□□□□□ -1.43
CD44-215ENST00000525241 COL4A3BPQ9Y5P4 624 aa6.1□□□□□ -1.43
CD44-215ENST00000525241 PHLDB1Q86UU1 1377 aa6.09□□□□□ -1.43
CD44-215ENST00000525241 ZC3H11BA0A1B0GUI2 810 aaPredicted RBP6.09□□□□□ -1.43
CD44-215ENST00000525241 C9orf118A6NHY6 69 aa6.09□□□□□ -1.43
CD44-215ENST00000525241 NOBOXO60393 691 aa6.09□□□□□ -1.43
CD44-215ENST00000525241 ULK1O75385 1050 aa6.09□□□□□ -1.43
CD44-215ENST00000525241 MAFO75444 373 aaPredicted RBP6.09□□□□□ -1.43
CD44-215ENST00000525241 APEX1P27695 318 aaKnown RBP6.09□□□□□ -1.43
CD44-215ENST00000525241 TMPRSS15P98073 1019 aa6.09□□□□□ -1.43
CD44-215ENST00000525241 PTPROQ16827 1216 aa6.09□□□□□ -1.43
CD44-215ENST00000525241 KANSL1Q7Z3B3 1105 aa6.09□□□□□ -1.43
CD44-215ENST00000525241 RASSF3Q86WH2 238 aa6.09□□□□□ -1.43
CD44-215ENST00000525241 PHYKPLQ8IUZ5 450 aa6.09□□□□□ -1.43
CD44-215ENST00000525241 C7orf31Q8N865 590 aa6.09□□□□□ -1.43
CD44-215ENST00000525241 SYT8Q8NBV8 401 aa6.09□□□□□ -1.43
CD44-215ENST00000525241 CLRN3Q8NCR9 226 aa6.09□□□□□ -1.43
CD44-215ENST00000525241 MBD6Q96DN6 1003 aa6.09□□□□□ -1.43
CD44-215ENST00000525241 KCNC2Q96PR1 638 aa6.09□□□□□ -1.43
CD44-215ENST00000525241 MYL10Q9BUA6 226 aa6.09□□□□□ -1.43
CD44-215ENST00000525241 ZDHHC5Q9C0B5 715 aa6.09□□□□□ -1.43
CD44-215ENST00000525241 POFUT1Q9H488 388 aa6.09□□□□□ -1.43
CD44-215ENST00000525241 USP36Q9P275 1121 aaKnown RBP6.09□□□□□ -1.43
CD44-215ENST00000525241 MSRAQ9UJ68 235 aa6.09□□□□□ -1.43
CD44-215ENST00000525241 MCM8Q9UJA3 840 aa6.09□□□□□ -1.43
CD44-215ENST00000525241 ELL2O00472 640 aaPredicted RBP6.08□□□□□ -1.44
CD44-215ENST00000525241 PRPF6O94906 941 aaKnown RBP6.08□□□□□ -1.44
CD44-215ENST00000525241 CYP1A1P04798 512 aaPredicted RBP6.08□□□□□ -1.44
CD44-215ENST00000525241 BMP7P18075 431 aa6.08□□□□□ -1.44
CD44-215ENST00000525241 POLD1P28340 1107 aa6.08□□□□□ -1.44
CD44-215ENST00000525241 ADCY8P40145 1251 aa6.08□□□□□ -1.44
CD44-215ENST00000525241 SESN3P58005 492 aa6.08□□□□□ -1.44
CD44-215ENST00000525241 NFATC3Q12968 1075 aa6.08□□□□□ -1.44
CD44-215ENST00000525241 TOP3AQ13472 1001 aaPredicted RBP6.08□□□□□ -1.44
CD44-215ENST00000525241 MOGSQ13724 837 aa6.08□□□□□ -1.44
CD44-215ENST00000525241 NOLC1Q14978 699 aaKnown RBP eCLIP6.08□□□□□ -1.44
CD44-215ENST00000525241 PRAMEF9Q5VWM5 478 aa6.08□□□□□ -1.44
CD44-215ENST00000525241 RNF219Q5W0B1 726 aaPredicted RBP6.08□□□□□ -1.44
CD44-215ENST00000525241 Q6ZUG5 572 aa6.08□□□□□ -1.44
Retrieved 100 of 20,778 RNA–protein pairs in 16.8 ms