RNA–Protein interactions for RNA: ENST00000515847.1

LIMCH1-222, Transcript of LIM and calponin homology domains 1, humanhuman

TSL 4

Gene LIMCH1, Length 490 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMCH1-222ENST00000515847 CHMP5Q9NZZ3 219 aa8.68□□□□□ -1.02
LIMCH1-222ENST00000515847 GABBR1Q9UBS5 961 aa8.68□□□□□ -1.02
LIMCH1-222ENST00000515847 LRWD1Q9UFC0 647 aa8.68□□□□□ -1.02
LIMCH1-222ENST00000515847 VAV3Q9UKW4 847 aa8.68□□□□□ -1.02
LIMCH1-222ENST00000515847 RANBP2P49792 3224 aaKnown RBP8.68□□□□□ -1.02
LIMCH1-222ENST00000515847 IGKV6D-21A0A0A0MT36 114 aa8.67□□□□□ -1.02
LIMCH1-222ENST00000515847 HAS3O00219 553 aa8.67□□□□□ -1.02
LIMCH1-222ENST00000515847 MAGEB2O15479 319 aa8.67□□□□□ -1.02
LIMCH1-222ENST00000515847 B4GALT4O60513 344 aa8.67□□□□□ -1.02
LIMCH1-222ENST00000515847 PPP6R2O75170 966 aa8.67□□□□□ -1.02
LIMCH1-222ENST00000515847 CD4P01730 458 aa8.67□□□□□ -1.02
LIMCH1-222ENST00000515847 OATP04181 439 aa8.67□□□□□ -1.02
LIMCH1-222ENST00000515847 NCLP19338 710 aaKnown RBP8.67□□□□□ -1.02
LIMCH1-222ENST00000515847 PBX2P40425 430 aa8.67□□□□□ -1.02
LIMCH1-222ENST00000515847 UBA7P41226 1012 aa8.67□□□□□ -1.02
LIMCH1-222ENST00000515847 NASPP49321 788 aaPredicted RBP8.67□□□□□ -1.02
LIMCH1-222ENST00000515847 PRKCEQ02156 737 aa8.67□□□□□ -1.02
LIMCH1-222ENST00000515847 FAAP100Q0VG06 881 aa8.67□□□□□ -1.02
LIMCH1-222ENST00000515847 ZNF484Q5JVG2 852 aa8.67□□□□□ -1.02
LIMCH1-222ENST00000515847 ABHD15Q6UXT9 468 aa8.67□□□□□ -1.02
LIMCH1-222ENST00000515847 SH3RF1Q7Z6J0 888 aa8.67□□□□□ -1.02
LIMCH1-222ENST00000515847 C4orf19Q8IY42 314 aa8.67□□□□□ -1.02
LIMCH1-222ENST00000515847 KRI1Q8N9T8 703 aaKnown RBP8.67□□□□□ -1.02
LIMCH1-222ENST00000515847 SNX29Q8TEQ0 813 aa8.67□□□□□ -1.02
LIMCH1-222ENST00000515847 SLC7A3Q8WY07 619 aa8.67□□□□□ -1.02
LIMCH1-222ENST00000515847 IPO9Q96P70 1041 aaKnown RBP8.67□□□□□ -1.02
LIMCH1-222ENST00000515847 MAP7D2Q96T17 732 aa8.67□□□□□ -1.02
LIMCH1-222ENST00000515847 LXNQ9BS40 222 aa8.67□□□□□ -1.02
LIMCH1-222ENST00000515847 TRPV6Q9H1D0 765 aa8.67□□□□□ -1.02
LIMCH1-222ENST00000515847 TRMT13Q9NUP7 481 aaKnown RBP8.67□□□□□ -1.02
LIMCH1-222ENST00000515847 CCDC39Q9UFE4 941 aa8.67□□□□□ -1.02
LIMCH1-222ENST00000515847 GTF2IRD1Q9UHL9 959 aa8.67□□□□□ -1.02
LIMCH1-222ENST00000515847 PCDHB6Q9Y5E3 794 aa8.67□□□□□ -1.02
LIMCH1-222ENST00000515847 PHLPP2Q6ZVD8 1323 aa8.66□□□□□ -1.02
LIMCH1-222ENST00000515847 TRIM43BA6NCK2 446 aa8.66□□□□□ -1.02
LIMCH1-222ENST00000515847 GOLGA6L4A6NEF3 574 aa8.66□□□□□ -1.02
LIMCH1-222ENST00000515847 LYPLA2O95372 231 aa8.66□□□□□ -1.02
LIMCH1-222ENST00000515847 SMIM10L2AP0DMW4 78 aa8.66□□□□□ -1.02
LIMCH1-222ENST00000515847 SMIM10L2BP0DMW5 78 aa8.66□□□□□ -1.02
LIMCH1-222ENST00000515847 MARK3P27448 753 aa8.66□□□□□ -1.02
LIMCH1-222ENST00000515847 RPA1P27694 616 aa8.66□□□□□ -1.02
LIMCH1-222ENST00000515847 RFC5P40937 340 aa8.66□□□□□ -1.02
LIMCH1-222ENST00000515847 TECP42680 631 aa8.66□□□□□ -1.02
LIMCH1-222ENST00000515847 DNM2P50570 870 aa8.66□□□□□ -1.02
LIMCH1-222ENST00000515847 CDC42EP1Q00587 391 aa8.66□□□□□ -1.02
LIMCH1-222ENST00000515847 PTK7Q13308 1070 aa8.66□□□□□ -1.02
LIMCH1-222ENST00000515847 DSG2Q14126 1118 aa8.66□□□□□ -1.02
LIMCH1-222ENST00000515847 ODR4Q5SWX8 454 aa8.66□□□□□ -1.02
LIMCH1-222ENST00000515847 PRPF38BQ5VTL8 546 aaKnown RBP8.66□□□□□ -1.02
LIMCH1-222ENST00000515847 SWSAP1Q6NVH7 229 aa8.66□□□□□ -1.02
LIMCH1-222ENST00000515847 CCDC60Q8IWA6 550 aaPredicted RBP8.66□□□□□ -1.02
LIMCH1-222ENST00000515847 HAS1Q92839 578 aa8.66□□□□□ -1.02
LIMCH1-222ENST00000515847 TRIM43Q96BQ3 446 aaPredicted RBP8.66□□□□□ -1.02
LIMCH1-222ENST00000515847 NACC1Q96RE7 527 aa8.66□□□□□ -1.02
LIMCH1-222ENST00000515847 PCYT2Q99447 389 aa8.66□□□□□ -1.02
LIMCH1-222ENST00000515847 POLR3CQ9BUI4 534 aaPredicted RBP8.66□□□□□ -1.02
LIMCH1-222ENST00000515847 TMEM39AQ9NV64 488 aa8.66□□□□□ -1.02
LIMCH1-222ENST00000515847 FAM13BQ9NYF5 915 aa8.66□□□□□ -1.02
LIMCH1-222ENST00000515847 HDAC6Q9UBN7 1215 aa8.66□□□□□ -1.02
LIMCH1-222ENST00000515847 SEPT9Q9UHD8 586 aaPredicted RBP8.66□□□□□ -1.02
LIMCH1-222ENST00000515847 TUBE1Q9UJT0 475 aa8.66□□□□□ -1.02
LIMCH1-222ENST00000515847 TBX21Q9UL17 535 aa8.66□□□□□ -1.02
LIMCH1-222ENST00000515847 RBM19Q9Y4C8 960 aaKnown RBP8.66□□□□□ -1.02
LIMCH1-222ENST00000515847 MAFBQ9Y5Q3 323 aaPredicted RBP8.66□□□□□ -1.02
LIMCH1-222ENST00000515847 TRIP12Q14669 1992 aaPredicted RBP8.65□□□□□ -1.02
LIMCH1-222ENST00000515847 WDR81Q562E7 1941 aa8.65□□□□□ -1.02
LIMCH1-222ENST00000515847 VWA3AA6NCI4 1184 aa8.65□□□□□ -1.02
LIMCH1-222ENST00000515847 GOLGA6L22H0YM25 854 aa8.65□□□□□ -1.02
LIMCH1-222ENST00000515847 KIAA0355O15063 1070 aa8.65□□□□□ -1.02
LIMCH1-222ENST00000515847 SPTLC2O15270 562 aa8.65□□□□□ -1.02
LIMCH1-222ENST00000515847 PFKMP08237 780 aa8.65□□□□□ -1.02
LIMCH1-222ENST00000515847 CYP2C9P11712 490 aa8.65□□□□□ -1.02
LIMCH1-222ENST00000515847 XRCC6P12956 609 aaKnown RBP eCLIP8.65□□□□□ -1.02
LIMCH1-222ENST00000515847 ITGB8P26012 769 aa8.65□□□□□ -1.02
LIMCH1-222ENST00000515847 RFC2P35250 354 aa8.65□□□□□ -1.02
LIMCH1-222ENST00000515847 CCT6AP40227 531 aaKnown RBP8.65□□□□□ -1.02
LIMCH1-222ENST00000515847 MAGEA10P43363 369 aaPredicted RBP8.65□□□□□ -1.02
LIMCH1-222ENST00000515847 TOB1P50616 345 aaPredicted RBP8.65□□□□□ -1.02
LIMCH1-222ENST00000515847 POLGP54098 1239 aaPredicted RBP8.65□□□□□ -1.02
LIMCH1-222ENST00000515847 ZNF200P98182 395 aaPredicted RBP8.65□□□□□ -1.02
LIMCH1-222ENST00000515847 TBC1D8BQ0IIM8 1120 aa8.65□□□□□ -1.02
LIMCH1-222ENST00000515847 HIC1Q14526 733 aa8.65□□□□□ -1.02
LIMCH1-222ENST00000515847 SLC39A14Q15043 492 aa8.65□□□□□ -1.02
LIMCH1-222ENST00000515847 GRIK4Q16099 956 aa8.65□□□□□ -1.02
LIMCH1-222ENST00000515847 PTGISQ16647 500 aa8.65□□□□□ -1.02
LIMCH1-222ENST00000515847 GDF6Q6KF10 455 aaPredicted RBP8.65□□□□□ -1.02
LIMCH1-222ENST00000515847 B3GNT9Q6UX72 402 aa8.65□□□□□ -1.02
LIMCH1-222ENST00000515847 CCDC73Q6ZRK6 1079 aa8.65□□□□□ -1.02
LIMCH1-222ENST00000515847 IGSF22Q8N9C0 903 aa8.65□□□□□ -1.02
LIMCH1-222ENST00000515847 TCP11Q8WWU5 503 aa8.65□□□□□ -1.02
LIMCH1-222ENST00000515847 SPATA32Q96LK8 384 aa8.65□□□□□ -1.02
LIMCH1-222ENST00000515847 GBP4Q96PP9 640 aa8.65□□□□□ -1.02
LIMCH1-222ENST00000515847 LBHD1Q9BQE6 289 aaPredicted RBP8.65□□□□□ -1.02
LIMCH1-222ENST00000515847 EIF2AK1Q9BQI3 630 aaKnown RBP8.65□□□□□ -1.02
LIMCH1-222ENST00000515847 TIPINQ9BVW5 301 aa8.65□□□□□ -1.02
LIMCH1-222ENST00000515847 LRRC27Q9C0I9 530 aa8.65□□□□□ -1.02
LIMCH1-222ENST00000515847 MTIF3Q9H2K0 278 aaKnown RBP8.65□□□□□ -1.02
LIMCH1-222ENST00000515847 TMEM60Q9H2L4 133 aa8.65□□□□□ -1.02
LIMCH1-222ENST00000515847 CUEDC2Q9H467 287 aa8.65□□□□□ -1.02
LIMCH1-222ENST00000515847 RNPEPQ9H4A4 650 aa8.65□□□□□ -1.02
Retrieved 100 of 20,778 RNA–protein pairs in 32.6 ms