RNA–Protein interactions for RNA: ENST00000504627.1

SQSTM1-209, Transcript of sequestosome 1, humanhuman

TSL 5

Gene SQSTM1, Length 602 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SQSTM1-209ENST00000504627 AAK1Q2M2I8 961 aa20.34■□□□□ 0.85
SQSTM1-209ENST00000504627 ZNF746Q6NUN9 644 aaPredicted RBP20.34■□□□□ 0.85
SQSTM1-209ENST00000504627 SMAP1Q8IYB5 467 aaPredicted RBP20.34■□□□□ 0.85
SQSTM1-209ENST00000504627 NME8Q8N427 588 aa20.34■□□□□ 0.85
SQSTM1-209ENST00000504627 SP7Q8TDD2 431 aaPredicted RBP20.34■□□□□ 0.85
SQSTM1-209ENST00000504627 CD52P31358 61 aa20.33■□□□□ 0.85
SQSTM1-209ENST00000504627 NUCB2P80303 420 aa20.33■□□□□ 0.85
SQSTM1-209ENST00000504627 TRMT1LQ7Z2T5 733 aaKnown RBP20.33■□□□□ 0.85
SQSTM1-209ENST00000504627 SAMD11Q96NU1 681 aa20.33■□□□□ 0.85
SQSTM1-209ENST00000504627 PCDHA4Q9UN74 947 aa20.33■□□□□ 0.85
SQSTM1-209ENST00000504627 PCDHA10Q9Y5I2 948 aa20.33■□□□□ 0.85
SQSTM1-209ENST00000504627 SPTBN5Q9NRC6 3674 aaKnown RBP20.32■□□□□ 0.84
SQSTM1-209ENST00000504627 ENPP3O14638 875 aa20.32■□□□□ 0.84
SQSTM1-209ENST00000504627 USP11P51784 963 aa20.32■□□□□ 0.84
SQSTM1-209ENST00000504627 TFF2Q03403 129 aa20.32■□□□□ 0.84
SQSTM1-209ENST00000504627 ZNF484Q5JVG2 852 aa20.32■□□□□ 0.84
SQSTM1-209ENST00000504627 TBCKQ8TEA7 893 aa20.32■□□□□ 0.84
SQSTM1-209ENST00000504627 CELF4Q9BZC1 486 aaKnown RBP20.32■□□□□ 0.84
SQSTM1-209ENST00000504627 AGO3Q9H9G7 860 aaKnown RBP20.32■□□□□ 0.84
SQSTM1-209ENST00000504627 COG5Q9UP83 839 aa20.32■□□□□ 0.84
SQSTM1-209ENST00000504627 GINS2Q9Y248 185 aa20.32■□□□□ 0.84
SQSTM1-209ENST00000504627 SQORQ9Y6N5 450 aa20.32■□□□□ 0.84
SQSTM1-209ENST00000504627 TTC28Q96AY4 2481 aa20.32■□□□□ 0.84
SQSTM1-209ENST00000504627 COL1A2P08123 1366 aa20.32■□□□□ 0.84
SQSTM1-209ENST00000504627 PAK2Q13177 524 aa20.31■□□□□ 0.84
SQSTM1-209ENST00000504627 EPC2Q52LR7 807 aa20.31■□□□□ 0.84
SQSTM1-209ENST00000504627 FIBCD1Q8N539 461 aa20.31■□□□□ 0.84
SQSTM1-209ENST00000504627 FAM184AQ8NB25 1140 aa20.31■□□□□ 0.84
SQSTM1-209ENST00000504627 BBXQ8WY36 941 aaPredicted RBP20.31■□□□□ 0.84
SQSTM1-209ENST00000504627 HLA-CQ95604 372 aa20.31■□□□□ 0.84
SQSTM1-209ENST00000504627 FTHL17Q9BXU8 183 aa20.31■□□□□ 0.84
SQSTM1-209ENST00000504627 GABBR1Q9UBS5 961 aa20.31■□□□□ 0.84
SQSTM1-209ENST00000504627 MAFBQ9Y5Q3 323 aaPredicted RBP20.31■□□□□ 0.84
SQSTM1-209ENST00000504627 WDR64B1ANS9 1081 aa20.3■□□□□ 0.84
SQSTM1-209ENST00000504627 MSH4O15457 936 aa20.3■□□□□ 0.84
SQSTM1-209ENST00000504627 ATP4AP20648 1035 aa20.3■□□□□ 0.84
SQSTM1-209ENST00000504627 TMEM192Q8IY95 271 aa20.3■□□□□ 0.84
SQSTM1-209ENST00000504627 BLIDQ8IZY5 108 aa20.3■□□□□ 0.84
SQSTM1-209ENST00000504627 ADAMTS19Q8TE59 1207 aa20.3■□□□□ 0.84
SQSTM1-209ENST00000504627 LENG9Q96B70 501 aa20.3■□□□□ 0.84
SQSTM1-209ENST00000504627 ORC3Q9UBD5 711 aaPredicted RBP20.3■□□□□ 0.84
SQSTM1-209ENST00000504627 PADI3Q9ULW8 664 aa20.3■□□□□ 0.84
SQSTM1-209ENST00000504627 IGSF9BQ9UPX0 1349 aa20.29■□□□□ 0.84
SQSTM1-209ENST00000504627 CHMP2AO43633 222 aa20.29■□□□□ 0.84
SQSTM1-209ENST00000504627 GAS7O60861 476 aa20.29■□□□□ 0.84
SQSTM1-209ENST00000504627 PTPROQ16827 1216 aa20.29■□□□□ 0.84
SQSTM1-209ENST00000504627 GALNT17Q6IS24 598 aa20.29■□□□□ 0.84
SQSTM1-209ENST00000504627 METTL13Q8N6R0 699 aa20.29■□□□□ 0.84
SQSTM1-209ENST00000504627 WASF1Q92558 559 aa20.29■□□□□ 0.84
SQSTM1-209ENST00000504627 AIFM3Q96NN9 605 aa20.29■□□□□ 0.84
SQSTM1-209ENST00000504627 UHRF1Q96T88 793 aaPredicted RBP20.29■□□□□ 0.84
SQSTM1-209ENST00000504627 RIT2Q99578 217 aa20.29■□□□□ 0.84
SQSTM1-209ENST00000504627 TEKT3Q9BXF9 490 aa20.29■□□□□ 0.84
SQSTM1-209ENST00000504627 DISC1Q9NRI5 854 aa20.29■□□□□ 0.84
SQSTM1-209ENST00000504627 CEP131Q9UPN4 1083 aa20.29■□□□□ 0.84
SQSTM1-209ENST00000504627 COL4A4P53420 1690 aaPredicted RBP20.29■□□□□ 0.84
SQSTM1-209ENST00000504627 KDM3AQ9Y4C1 1321 aa20.28■□□□□ 0.84
SQSTM1-209ENST00000504627 REV3LO60673 3130 aa20.28■□□□□ 0.84
SQSTM1-209ENST00000504627 SIP14410 1827 aa20.28■□□□□ 0.84
SQSTM1-209ENST00000504627 TNFRSF10AO00220 468 aa20.28■□□□□ 0.84
SQSTM1-209ENST00000504627 FDPSP14324 419 aaKnown RBP20.28■□□□□ 0.84
SQSTM1-209ENST00000504627 XBP1P17861 261 aa20.28■□□□□ 0.84
SQSTM1-209ENST00000504627 SYT1P21579 422 aa20.28■□□□□ 0.84
SQSTM1-209ENST00000504627 NFX1Q12986 1120 aaKnown RBP20.28■□□□□ 0.84
SQSTM1-209ENST00000504627 GPM6BQ13491 265 aa20.28■□□□□ 0.84
SQSTM1-209ENST00000504627 LRCH2Q5VUJ6 765 aa20.28■□□□□ 0.84
SQSTM1-209ENST00000504627 KIAA0319LQ8IZA0 1049 aa20.28■□□□□ 0.84
SQSTM1-209ENST00000504627 FAM177A1Q8N128 213 aaPredicted RBP20.28■□□□□ 0.84
SQSTM1-209ENST00000504627 FAM167AQ96KS9 214 aa20.28■□□□□ 0.84
SQSTM1-209ENST00000504627 ADGRA3Q8IWK6 1321 aa20.27■□□□□ 0.84
SQSTM1-209ENST00000504627 H3BNC9 293 aa20.27■□□□□ 0.84
SQSTM1-209ENST00000504627 STX6O43752 255 aa20.27■□□□□ 0.84
SQSTM1-209ENST00000504627 RPS6KA5O75582 802 aa20.27■□□□□ 0.84
SQSTM1-209ENST00000504627 IBSPP21815 317 aaPredicted RBP20.27■□□□□ 0.84
SQSTM1-209ENST00000504627 CTNNB1P35222 781 aa20.27■□□□□ 0.84
SQSTM1-209ENST00000504627 KCNQ1P51787 676 aa20.27■□□□□ 0.84
SQSTM1-209ENST00000504627 JAK3P52333 1124 aa20.27■□□□□ 0.84
SQSTM1-209ENST00000504627 BTG3Q14201 252 aaPredicted RBP20.27■□□□□ 0.84
SQSTM1-209ENST00000504627 NONOQ15233 471 aaKnown RBP eCLIP20.27■□□□□ 0.842e-8■■■■□ 21.7
SQSTM1-209ENST00000504627 TMEM266Q2M3C6 531 aa20.27■□□□□ 0.84
SQSTM1-209ENST00000504627 Q4G0T1 1027 aa20.27■□□□□ 0.84
SQSTM1-209ENST00000504627 ODR4Q5SWX8 454 aa20.27■□□□□ 0.84
SQSTM1-209ENST00000504627 DAGLBQ8NCG7 672 aa20.27■□□□□ 0.84
SQSTM1-209ENST00000504627 NRBP2Q9NSY0 501 aa20.27■□□□□ 0.84
SQSTM1-209ENST00000504627 KCNJ14Q9UNX9 436 aa20.27■□□□□ 0.84
SQSTM1-209ENST00000504627 RWDD3Q9Y3V2 267 aa20.27■□□□□ 0.84
SQSTM1-209ENST00000504627 XIRP2A4UGR9 3374 aa20.27■□□□□ 0.84
SQSTM1-209ENST00000504627 ZBTB42B2RXF5 422 aa20.26■□□□□ 0.83
SQSTM1-209ENST00000504627 MAGEB2O15479 319 aa20.26■□□□□ 0.83
SQSTM1-209ENST00000504627 EDIL3O43854 480 aa20.26■□□□□ 0.83
SQSTM1-209ENST00000504627 TDP2O95551 362 aa20.26■□□□□ 0.83
SQSTM1-209ENST00000504627 C22orf31O95567 290 aa20.26■□□□□ 0.83
SQSTM1-209ENST00000504627 BRD1O95696 1058 aa20.26■□□□□ 0.83
SQSTM1-209ENST00000504627 STAG3L1P0CL83 205 aa20.26■□□□□ 0.83
SQSTM1-209ENST00000504627 SFNP31947 248 aa20.26■□□□□ 0.83
SQSTM1-209ENST00000504627 LARP1BQ659C4 914 aaKnown RBP20.26■□□□□ 0.83
SQSTM1-209ENST00000504627 KRT25Q7Z3Z0 450 aa20.26■□□□□ 0.83
SQSTM1-209ENST00000504627 RTN4RL1Q86UN2 441 aaPredicted RBP20.26■□□□□ 0.83
SQSTM1-209ENST00000504627 LINC01599Q8WXQ3 324 aa20.26■□□□□ 0.83
SQSTM1-209ENST00000504627 SLC5A5Q92911 643 aa20.26■□□□□ 0.83
Retrieved 100 of 20,778 RNA–protein pairs in 22.8 ms