RNA–Protein interactions for RNA: ENST00000498143.5

USP54-216, Transcript of ubiquitin specific peptidase 54, humanhuman

TSL 1 (best)

Gene USP54, Length 4,313 nt, Biotype retained intron, Subcellular localisation Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP54-216ENST00000498143 CALML3P27482 149 aa5.6□□□□□ -1.51
USP54-216ENST00000498143 CD151P48509 253 aa5.6□□□□□ -1.51
USP54-216ENST00000498143 CACTINQ8WUQ7 758 aaKnown RBP5.6□□□□□ -1.51
USP54-216ENST00000498143 RUNDC1Q96C34 613 aa5.6□□□□□ -1.51
USP54-216ENST00000498143 RMDN1Q96DB5 314 aa5.6□□□□□ -1.51
USP54-216ENST00000498143 C16orf45Q96MC5 204 aaPredicted RBP5.6□□□□□ -1.51
USP54-216ENST00000498143 EMILIN2Q9BXX0 1053 aa5.6□□□□□ -1.51
USP54-216ENST00000498143 TRMT1Q9NXH9 659 aaKnown RBP5.6□□□□□ -1.51
USP54-216ENST00000498143 MAP3K20Q9NYL2 800 aaKnown RBP5.6□□□□□ -1.51
USP54-216ENST00000498143 RALYQ9UKM9 306 aaKnown RBP5.6□□□□□ -1.51
USP54-216ENST00000498143 FAN1Q9Y2M0 1017 aa5.6□□□□□ -1.51
USP54-216ENST00000498143 TNKSO95271 1327 aa5.6□□□□□ -1.51
USP54-216ENST00000498143 PALM2-AKAP2B1ALY0 433 aaPredicted RBP5.6□□□□□ -1.51
USP54-216ENST00000498143 KIAA0355O15063 1070 aa5.6□□□□□ -1.51
USP54-216ENST00000498143 PPP1R37O75864 691 aa5.6□□□□□ -1.51
USP54-216ENST00000498143 BAIAP3O94812 1187 aa5.6□□□□□ -1.51
USP54-216ENST00000498143 GH2P01242 217 aa5.6□□□□□ -1.51
USP54-216ENST00000498143 KRT13P13646 458 aa5.6□□□□□ -1.51
USP54-216ENST00000498143 AFMP43652 599 aa5.6□□□□□ -1.51
USP54-216ENST00000498143 CREB5Q02930 508 aa5.6□□□□□ -1.51
USP54-216ENST00000498143 WASHC5Q12768 1159 aa5.6□□□□□ -1.51
USP54-216ENST00000498143 TTLL4Q14679 1199 aa5.6□□□□□ -1.51
USP54-216ENST00000498143 PTGISQ16647 500 aa5.6□□□□□ -1.51
USP54-216ENST00000498143 SESTD1Q86VW0 696 aa5.6□□□□□ -1.51
USP54-216ENST00000498143 ATP11CQ8NB49 1132 aa5.6□□□□□ -1.51
USP54-216ENST00000498143 PPP1R14BQ96C90 147 aa5.6□□□□□ -1.51
USP54-216ENST00000498143 AZI2Q9H6S1 392 aa5.6□□□□□ -1.51
USP54-216ENST00000498143 CCSER2Q9H7U1 834 aa5.6□□□□□ -1.51
USP54-216ENST00000498143 NXF1Q9UBU9 619 aaKnown RBP5.6□□□□□ -1.51
USP54-216ENST00000498143 DACH1Q9UI36 760 aa5.6□□□□□ -1.51
USP54-216ENST00000498143 APOBEC2Q9Y235 224 aaKnown RBP5.6□□□□□ -1.51
USP54-216ENST00000498143 GOLGA4Q13439 2230 aaKnown RBP5.6□□□□□ -1.51
USP54-216ENST00000498143 TPPPO94811 219 aa5.6□□□□□ -1.51
USP54-216ENST00000498143 MMP3P08254 477 aa5.6□□□□□ -1.51
USP54-216ENST00000498143 BCRP11274 1271 aa5.6□□□□□ -1.51
USP54-216ENST00000498143 MYOGP15173 224 aa5.6□□□□□ -1.51
USP54-216ENST00000498143 GNAT2P19087 354 aa5.6□□□□□ -1.51
USP54-216ENST00000498143 RFC1P35251 1148 aaPredicted RBP5.6□□□□□ -1.51
USP54-216ENST00000498143 AK2P54819 239 aa5.6□□□□□ -1.51
USP54-216ENST00000498143 SIM1P81133 766 aaPredicted RBP5.6□□□□□ -1.51
USP54-216ENST00000498143 LAMB3Q13751 1172 aa5.6□□□□□ -1.51
USP54-216ENST00000498143 PTPAQ15257 358 aa5.6□□□□□ -1.51
USP54-216ENST00000498143 ZSCAN23Q3MJ62 389 aa5.6□□□□□ -1.51
USP54-216ENST00000498143 PPP1R15BQ5SWA1 713 aa5.6□□□□□ -1.51
USP54-216ENST00000498143 MAATS1Q7Z4T9 603 aa5.6□□□□□ -1.51
USP54-216ENST00000498143 TLK2Q86UE8 772 aa5.6□□□□□ -1.51
USP54-216ENST00000498143 SETD7Q8WTS6 366 aaKnown RBP5.6□□□□□ -1.51
USP54-216ENST00000498143 PIBF1Q8WXW3 757 aa5.6□□□□□ -1.51
USP54-216ENST00000498143 KLHL5Q96PQ7 755 aa5.6□□□□□ -1.51
USP54-216ENST00000498143 DDX23Q9BUQ8 820 aaKnown RBP5.6□□□□□ -1.51
USP54-216ENST00000498143 NUSAP1Q9BXS6 441 aaKnown RBP5.6□□□□□ -1.51
USP54-216ENST00000498143 LMAN2LQ9H0V9 348 aa5.6□□□□□ -1.51
USP54-216ENST00000498143 HELLSQ9NRZ9 838 aa5.6□□□□□ -1.51
USP54-216ENST00000498143 SERTAD1Q9UHV2 236 aa5.6□□□□□ -1.51
USP54-216ENST00000498143 PPP1R9AQ9ULJ8 1098 aa5.6□□□□□ -1.51
USP54-216ENST00000498143 ATP8A1Q9Y2Q0 1164 aa5.6□□□□□ -1.51
USP54-216ENST00000498143 NALCNQ8IZF0 1738 aa5.59□□□□□ -1.51
USP54-216ENST00000498143 RBM47A0AV96 593 aaKnown RBP5.59□□□□□ -1.51
USP54-216ENST00000498143 KLHL33A6NCF5 533 aa5.59□□□□□ -1.51
USP54-216ENST00000498143 TMEM8BA6NDV4 472 aa5.59□□□□□ -1.51
USP54-216ENST00000498143 SPTLC1O15269 473 aa5.59□□□□□ -1.51
USP54-216ENST00000498143 MCM3P25205 808 aa5.59□□□□□ -1.51
USP54-216ENST00000498143 DHPSP49366 369 aaPredicted RBP5.59□□□□□ -1.51
USP54-216ENST00000498143 MARSP56192 900 aaKnown RBP5.59□□□□□ -1.51
USP54-216ENST00000498143 CCDC144BQ3MJ40 725 aa5.59□□□□□ -1.51
USP54-216ENST00000498143 ADAT2Q7Z6V5 191 aaKnown RBP5.59□□□□□ -1.51
USP54-216ENST00000498143 STX12Q86Y82 276 aa5.59□□□□□ -1.51
USP54-216ENST00000498143 TMEM192Q8IY95 271 aa5.59□□□□□ -1.51
USP54-216ENST00000498143 ZNF34Q8IZ26 560 aa5.59□□□□□ -1.51
USP54-216ENST00000498143 TEX19Q8NA77 164 aa5.59□□□□□ -1.51
USP54-216ENST00000498143 GCNAQ96QF7 691 aa5.59□□□□□ -1.51
USP54-216ENST00000498143 TTC1Q99614 292 aa5.59□□□□□ -1.51
USP54-216ENST00000498143 NACA2Q9H009 215 aa5.59□□□□□ -1.51
USP54-216ENST00000498143 CRISPLD2Q9H0B8 497 aa5.59□□□□□ -1.51
USP54-216ENST00000498143 IFT122Q9HBG6 1241 aa5.59□□□□□ -1.51
USP54-216ENST00000498143 CLIP2Q9UDT6 1046 aa5.59□□□□□ -1.51
USP54-216ENST00000498143 DDX41Q9UJV9 622 aaKnown RBP5.59□□□□□ -1.51
USP54-216ENST00000498143 AFG3L2Q9Y4W6 797 aa5.59□□□□□ -1.51
USP54-216ENST00000498143 KIF1BO60333 1816 aa5.59□□□□□ -1.51
USP54-216ENST00000498143 RSPH10B2B2RC85 870 aa5.59□□□□□ -1.51
USP54-216ENST00000498143 GCOM1H8Y6P7 765 aaPredicted RBP5.59□□□□□ -1.51
USP54-216ENST00000498143 DUSP11O75319 330 aaKnown RBP5.59□□□□□ -1.51
USP54-216ENST00000498143 ZNF189O75820 626 aaPredicted RBP5.59□□□□□ -1.51
USP54-216ENST00000498143 ABL1P00519 1130 aa5.59□□□□□ -1.51
USP54-216ENST00000498143 PGK2P07205 417 aa5.59□□□□□ -1.51
USP54-216ENST00000498143 RSPH10BP0C881 870 aa5.59□□□□□ -1.51
USP54-216ENST00000498143 KRT5P13647 590 aa5.59□□□□□ -1.51
USP54-216ENST00000498143 SELPP16109 830 aa5.59□□□□□ -1.51
USP54-216ENST00000498143 ZNF16P17020 682 aaPredicted RBP5.59□□□□□ -1.51
USP54-216ENST00000498143 ZNF76P36508 570 aa5.59□□□□□ -1.51
USP54-216ENST00000498143 OLR1P78380 273 aa5.59□□□□□ -1.51
USP54-216ENST00000498143 ICA1Q05084 483 aa5.59□□□□□ -1.51
USP54-216ENST00000498143 HIC1Q14526 733 aa5.59□□□□□ -1.51
USP54-216ENST00000498143 KBTBD12Q3ZCT8 623 aa5.59□□□□□ -1.51
USP54-216ENST00000498143 NUDT18Q6ZVK8 323 aa5.59□□□□□ -1.51
USP54-216ENST00000498143 TNIP2Q8NFZ5 429 aa5.59□□□□□ -1.51
USP54-216ENST00000498143 CCDC26Q8TAB7 109 aa5.59□□□□□ -1.51
USP54-216ENST00000498143 CUL5Q93034 780 aa5.59□□□□□ -1.51
USP54-216ENST00000498143 AGBL1Q96MI9 1066 aa5.59□□□□□ -1.51
USP54-216ENST00000498143 USP26Q9BXU7 913 aa5.59□□□□□ -1.51
Retrieved 100 of 20,778 RNA–protein pairs in 17.9 ms