RNA–Protein interactions for RNA: ENST00000497815.5

CUX1-210, Transcript of cut like homeobox 1, humanhuman

TSL 2

Gene CUX1, Length 947 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Exosome, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CUX1-210ENST00000497815 ADALQ6DHV7 355 aa13.29□□□□□ -0.28
CUX1-210ENST00000497815 KCNK18Q7Z418 384 aa13.29□□□□□ -0.28
CUX1-210ENST00000497815 SLC43A3Q8NBI5 491 aa13.29□□□□□ -0.28
CUX1-210ENST00000497815 CEP170P1Q96L14 293 aa13.29□□□□□ -0.28
CUX1-210ENST00000497815 NIFKQ9BYG3 293 aaKnown RBP13.29□□□□□ -0.28
CUX1-210ENST00000497815 CCSER1Q9C0I3 900 aa13.29□□□□□ -0.28
CUX1-210ENST00000497815 NT5C3AQ9H0P0 336 aa13.29□□□□□ -0.28
CUX1-210ENST00000497815 FAM13BQ9NYF5 915 aa13.29□□□□□ -0.28
CUX1-210ENST00000497815 CCDC39Q9UFE4 941 aa13.29□□□□□ -0.28
CUX1-210ENST00000497815 DNM3Q9UQ16 869 aa13.29□□□□□ -0.28
CUX1-210ENST00000497815 NRCAMQ92823 1304 aa13.29□□□□□ -0.28
CUX1-210ENST00000497815 A0A1B0GVL5 298 aa13.28□□□□□ -0.28
CUX1-210ENST00000497815 RRN3P2A6NIE6 340 aa13.28□□□□□ -0.28
CUX1-210ENST00000497815 DCDC2CA8MYV0 355 aa13.28□□□□□ -0.28
CUX1-210ENST00000497815 ZBTB42B2RXF5 422 aa13.28□□□□□ -0.28
CUX1-210ENST00000497815 TREHO43280 583 aa13.28□□□□□ -0.28
CUX1-210ENST00000497815 SSBP05455 408 aaKnown RBP eCLIP13.28□□□□□ -0.28
CUX1-210ENST00000497815 GNAT1P11488 350 aa13.28□□□□□ -0.28
CUX1-210ENST00000497815 KLRC1P26715 233 aa13.28□□□□□ -0.28
CUX1-210ENST00000497815 PTPN11Q06124 597 aaPredicted RBP13.28□□□□□ -0.28
CUX1-210ENST00000497815 DHX8Q14562 1220 aaKnown RBP13.28□□□□□ -0.28
CUX1-210ENST00000497815 SNX17Q15036 470 aa13.28□□□□□ -0.28
CUX1-210ENST00000497815 HYIQ5T013 277 aa13.28□□□□□ -0.28
CUX1-210ENST00000497815 MARCH8Q5T0T0 291 aa13.28□□□□□ -0.28
CUX1-210ENST00000497815 SESTD1Q86VW0 696 aa13.28□□□□□ -0.28
CUX1-210ENST00000497815 FAM126BQ8IXS8 530 aa13.28□□□□□ -0.28
CUX1-210ENST00000497815 FSIP1Q8NA03 581 aa13.28□□□□□ -0.28
CUX1-210ENST00000497815 GBP4Q96PP9 640 aa13.28□□□□□ -0.28
CUX1-210ENST00000497815 BHMT2Q9H2M3 363 aa13.28□□□□□ -0.28
CUX1-210ENST00000497815 CYP26B1Q9NR63 512 aa13.28□□□□□ -0.28
CUX1-210ENST00000497815 ANKEF1Q9NU02 776 aa13.28□□□□□ -0.28
CUX1-210ENST00000497815 TUBE1Q9UJT0 475 aa13.28□□□□□ -0.28
CUX1-210ENST00000497815 COL1A2P08123 1366 aa13.28□□□□□ -0.28
CUX1-210ENST00000497815 SCN10AQ9Y5Y9 1956 aa13.27□□□□□ -0.28
CUX1-210ENST00000497815 A0A087X0B3 334 aa13.27□□□□□ -0.29
CUX1-210ENST00000497815 ARHGEF35A5YM69 484 aa13.27□□□□□ -0.29
CUX1-210ENST00000497815 TLR3O15455 904 aaKnown RBP13.27□□□□□ -0.29
CUX1-210ENST00000497815 SLC26A4O43511 780 aa13.27□□□□□ -0.29
CUX1-210ENST00000497815 PRPF40AO75400 957 aaKnown RBP13.27□□□□□ -0.29
CUX1-210ENST00000497815 CYP2C9P11712 490 aa13.27□□□□□ -0.29
CUX1-210ENST00000497815 PFKFB1P16118 471 aa13.27□□□□□ -0.29
CUX1-210ENST00000497815 MUTP22033 750 aa13.27□□□□□ -0.29
CUX1-210ENST00000497815 CMA1P23946 247 aa13.27□□□□□ -0.29
CUX1-210ENST00000497815 STAT6P42226 847 aa13.27□□□□□ -0.29
CUX1-210ENST00000497815 RARRES1P49788 294 aa13.27□□□□□ -0.29
CUX1-210ENST00000497815 POLGP54098 1239 aaPredicted RBP13.27□□□□□ -0.29
CUX1-210ENST00000497815 TBC1D8BQ0IIM8 1120 aa13.27□□□□□ -0.29
CUX1-210ENST00000497815 TARBP2Q15633 366 aaKnown RBP13.27□□□□□ -0.29
CUX1-210ENST00000497815 C1orf53Q5VUE5 145 aa13.27□□□□□ -0.29
CUX1-210ENST00000497815 RRAGBQ5VZM2 374 aa13.27□□□□□ -0.29
CUX1-210ENST00000497815 MTHFD1LQ6UB35 978 aa13.27□□□□□ -0.29
CUX1-210ENST00000497815 RUFY4Q6ZNE9 571 aa13.27□□□□□ -0.29
CUX1-210ENST00000497815 METTL13Q8N6R0 699 aa13.27□□□□□ -0.29
CUX1-210ENST00000497815 LRRC15Q8TF66 581 aa13.27□□□□□ -0.29
CUX1-210ENST00000497815 HTATIP2Q9BUP3 242 aa13.27□□□□□ -0.29
CUX1-210ENST00000497815 SEZ6LQ9BYH1 1024 aa13.27□□□□□ -0.29
CUX1-210ENST00000497815 FAM49AQ9H0Q0 323 aaPredicted RBP13.27□□□□□ -0.29
CUX1-210ENST00000497815 SUGCTQ9HAC7 445 aa13.27□□□□□ -0.29
CUX1-210ENST00000497815 DBR1Q9UK59 544 aaKnown RBP13.27□□□□□ -0.29
CUX1-210ENST00000497815 MROH7Q68CQ1 1323 aa13.27□□□□□ -0.29
CUX1-210ENST00000497815 A0A1W2PQ27 194 aa13.26□□□□□ -0.29
CUX1-210ENST00000497815 A0A1W2PQ64 194 aa13.26□□□□□ -0.29
CUX1-210ENST00000497815 A0A1W2PQD8 194 aa13.26□□□□□ -0.29
CUX1-210ENST00000497815 POLR2DO15514 142 aaKnown RBP13.26□□□□□ -0.29
CUX1-210ENST00000497815 USO1O60763 962 aaKnown RBP13.26□□□□□ -0.29
CUX1-210ENST00000497815 GADD45BO75293 160 aaPredicted RBP13.26□□□□□ -0.29
CUX1-210ENST00000497815 C22orf31O95567 290 aa13.26□□□□□ -0.29
CUX1-210ENST00000497815 EYA4O95677 639 aa13.26□□□□□ -0.29
CUX1-210ENST00000497815 XRCC6P12956 609 aaKnown RBP eCLIP13.26□□□□□ -0.29
CUX1-210ENST00000497815 HOXC8P31273 242 aa13.26□□□□□ -0.29
CUX1-210ENST00000497815 ADAM17P78536 824 aa13.26□□□□□ -0.29
CUX1-210ENST00000497815 PADI6Q6TGC4 694 aa13.26□□□□□ -0.29
CUX1-210ENST00000497815 CCDC73Q6ZRK6 1079 aa13.26□□□□□ -0.29
CUX1-210ENST00000497815 MAEAQ7L5Y9 396 aa13.26□□□□□ -0.29
CUX1-210ENST00000497815 ANKRD33Q7Z3H0 272 aa13.26□□□□□ -0.29
CUX1-210ENST00000497815 C7orf61Q8IZ16 206 aa13.26□□□□□ -0.29
CUX1-210ENST00000497815 LRRC71Q8N4P6 559 aa13.26□□□□□ -0.29
CUX1-210ENST00000497815 MRPS27Q92552 414 aaKnown RBP13.26□□□□□ -0.29
CUX1-210ENST00000497815 RAD54LQ92698 747 aa13.26□□□□□ -0.29
CUX1-210ENST00000497815 DHX58Q96C10 678 aa13.26□□□□□ -0.29
CUX1-210ENST00000497815 GOLPH3LQ9H4A5 285 aa13.26□□□□□ -0.29
CUX1-210ENST00000497815 PRDM5Q9NQX1 630 aaPredicted RBP13.26□□□□□ -0.29
CUX1-210ENST00000497815 KCNH3Q9ULD8 1083 aa13.26□□□□□ -0.29
CUX1-210ENST00000497815 KIAA0100Q14667 2235 aaKnown RBP13.25□□□□□ -0.29
CUX1-210ENST00000497815 MAFO75444 373 aaPredicted RBP13.25□□□□□ -0.29
CUX1-210ENST00000497815 CD4P01730 458 aa13.25□□□□□ -0.29
CUX1-210ENST00000497815 PLA2G4BP0C869 781 aa13.25□□□□□ -0.29
CUX1-210ENST00000497815 CLCN3P51790 818 aa13.25□□□□□ -0.29
CUX1-210ENST00000497815 NDUFA8P51970 172 aa13.25□□□□□ -0.29
CUX1-210ENST00000497815 FAAP100Q0VG06 881 aa13.25□□□□□ -0.29
CUX1-210ENST00000497815 MCM6Q14566 821 aa13.25□□□□□ -0.29
CUX1-210ENST00000497815 EMC2Q15006 297 aa13.25□□□□□ -0.29
CUX1-210ENST00000497815 NAALADL2Q58DX5 795 aa13.25□□□□□ -0.29
CUX1-210ENST00000497815 EFCAB12Q6NXP0 572 aa13.25□□□□□ -0.29
CUX1-210ENST00000497815 CLEC17AQ6ZS10 378 aa13.25□□□□□ -0.29
CUX1-210ENST00000497815 SERINC5Q86VE9 423 aa13.25□□□□□ -0.29
CUX1-210ENST00000497815 TMEM87AQ8NBN3 555 aa13.25□□□□□ -0.29
CUX1-210ENST00000497815 RETREG2Q8NC44 543 aa13.25□□□□□ -0.29
CUX1-210ENST00000497815 DNAJB3Q8WWF6 145 aa13.25□□□□□ -0.29
CUX1-210ENST00000497815 SLC7A3Q8WY07 619 aa13.25□□□□□ -0.29
Retrieved 100 of 20,778 RNA–protein pairs in 78.3 ms