RNA–Protein interactions for RNA: ENST00000496458.1

SF3B1-212, Transcript of splicing factor 3b subunit 1, humanhuman

TSL 2

Gene SF3B1, Length 475 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SF3B1-212ENST00000496458 MFSD3Q96ES6 412 aa8.25□□□□□ -1.09
SF3B1-212ENST00000496458 TARS2Q9BW92 718 aaKnown RBP8.25□□□□□ -1.09
SF3B1-212ENST00000496458 ACSS2Q9NR19 701 aa8.25□□□□□ -1.09
SF3B1-212ENST00000496458 ZKSCAN5Q9Y2L8 839 aa8.25□□□□□ -1.09
SF3B1-212ENST00000496458 FNTBP49356 437 aa8.24□□□□□ -1.09
SF3B1-212ENST00000496458 KCNQ1P51787 676 aa8.24□□□□□ -1.09
SF3B1-212ENST00000496458 RRADP55042 308 aa8.24□□□□□ -1.09
SF3B1-212ENST00000496458 PPP2CBP62714 309 aa8.24□□□□□ -1.09
SF3B1-212ENST00000496458 PPP2CAP67775 309 aa8.24□□□□□ -1.09
SF3B1-212ENST00000496458 USP10Q14694 798 aaKnown RBP8.24□□□□□ -1.09
SF3B1-212ENST00000496458 IFNL2Q8IZJ0 200 aa8.24□□□□□ -1.09
SF3B1-212ENST00000496458 NXPE1Q8N323 547 aa8.24□□□□□ -1.09
SF3B1-212ENST00000496458 CARD11Q9BXL7 1154 aa8.24□□□□□ -1.09
SF3B1-212ENST00000496458 JADE2Q9NQC1 790 aa8.24□□□□□ -1.09
SF3B1-212ENST00000496458 FBXO10Q9UK96 956 aa8.24□□□□□ -1.09
SF3B1-212ENST00000496458 CDC42EP3Q9UKI2 254 aa8.24□□□□□ -1.09
SF3B1-212ENST00000496458 TLDC2A0PJX2 215 aa8.23□□□□□ -1.09
SF3B1-212ENST00000496458 ZNF891A8MT65 544 aaPredicted RBP8.23□□□□□ -1.09
SF3B1-212ENST00000496458 K7ESM1 405 aa8.23□□□□□ -1.09
SF3B1-212ENST00000496458 GAS7O60861 476 aa8.23□□□□□ -1.09
SF3B1-212ENST00000496458 HMGCRP04035 888 aa8.23□□□□□ -1.09
SF3B1-212ENST00000496458 ITGB3P05106 788 aa8.23□□□□□ -1.09
SF3B1-212ENST00000496458 SLC9A1P19634 815 aa8.23□□□□□ -1.09
SF3B1-212ENST00000496458 POU3F2P20265 443 aaPredicted RBP8.23□□□□□ -1.09
SF3B1-212ENST00000496458 PTX3P26022 381 aaPredicted RBP8.23□□□□□ -1.09
SF3B1-212ENST00000496458 ETV4P43268 484 aa8.23□□□□□ -1.09
SF3B1-212ENST00000496458 ALDH6A1Q02252 535 aaKnown RBP8.23□□□□□ -1.09
SF3B1-212ENST00000496458 PCBP1Q15365 356 aaKnown RBP eCLIP8.23□□□□□ -1.09
SF3B1-212ENST00000496458 CREB3L3Q68CJ9 461 aa8.23□□□□□ -1.09
SF3B1-212ENST00000496458 ORAI3Q9BRQ5 295 aa8.23□□□□□ -1.09
SF3B1-212ENST00000496458 ZDHHC5Q9C0B5 715 aa8.23□□□□□ -1.09
SF3B1-212ENST00000496458 MTFR1LQ9H019 292 aa8.23□□□□□ -1.09
SF3B1-212ENST00000496458 H2AFY2Q9P0M6 372 aaPredicted RBP8.23□□□□□ -1.09
SF3B1-212ENST00000496458 TMA7Q9Y2S6 64 aaKnown RBP8.23□□□□□ -1.09
SF3B1-212ENST00000496458 ATP2A2P16615 1042 aaKnown RBP8.22□□□□□ -1.09
SF3B1-212ENST00000496458 APEX1P27695 318 aaKnown RBP8.22□□□□□ -1.09
SF3B1-212ENST00000496458 BUD31P41223 144 aaPredicted RBP8.22□□□□□ -1.09
SF3B1-212ENST00000496458 EPHB4P54760 987 aa8.22□□□□□ -1.09
SF3B1-212ENST00000496458 MOGSQ13724 837 aa8.22□□□□□ -1.09
SF3B1-212ENST00000496458 LIMS2Q7Z4I7 341 aa8.22□□□□□ -1.09
SF3B1-212ENST00000496458 PPM1KQ8N3J5 372 aa8.22□□□□□ -1.09
SF3B1-212ENST00000496458 RBM15Q96T37 977 aaKnown RBP eCLIP8.22□□□□□ -1.09
SF3B1-212ENST00000496458 ELF4Q99607 663 aaPredicted RBP8.22□□□□□ -1.09
SF3B1-212ENST00000496458 FOXB1Q99853 325 aa8.22□□□□□ -1.09
SF3B1-212ENST00000496458 PTPN18Q99952 460 aa8.22□□□□□ -1.09
SF3B1-212ENST00000496458 OXSMQ9NWU1 459 aa8.22□□□□□ -1.09
SF3B1-212ENST00000496458 PPP4R1LQ9P1A2 415 aa8.22□□□□□ -1.09
SF3B1-212ENST00000496458 F2P00734 622 aa8.21□□□□□ -1.1
SF3B1-212ENST00000496458 PRLP01236 227 aa8.21□□□□□ -1.1
SF3B1-212ENST00000496458 CYP17A1P05093 508 aa8.21□□□□□ -1.1
SF3B1-212ENST00000496458 SLC6A3Q01959 620 aa8.21□□□□□ -1.1
SF3B1-212ENST00000496458 DSG1Q02413 1049 aa8.21□□□□□ -1.1
SF3B1-212ENST00000496458 ZNF568Q3ZCX4 644 aa8.21□□□□□ -1.1
SF3B1-212ENST00000496458 PLEKHG4Q58EX7 1191 aa8.21□□□□□ -1.1
SF3B1-212ENST00000496458 GRAMD4Q6IC98 578 aa8.21□□□□□ -1.1
SF3B1-212ENST00000496458 GLB1LQ6UWU2 654 aa8.21□□□□□ -1.1
SF3B1-212ENST00000496458 KIF18BQ86Y91 864 aa8.21□□□□□ -1.1
SF3B1-212ENST00000496458 E2F7Q96AV8 911 aa8.21□□□□□ -1.1
SF3B1-212ENST00000496458 IFT57Q9NWB7 429 aa8.21□□□□□ -1.1
SF3B1-212ENST00000496458 SLC4A7Q9Y6M7 1214 aa8.21□□□□□ -1.1
SF3B1-212ENST00000496458 A0A0G2JNJ9 132 aa8.2□□□□□ -1.1
SF3B1-212ENST00000496458 UBA6A0AVT1 1052 aaPredicted RBP8.2□□□□□ -1.1
SF3B1-212ENST00000496458 NPEPPSL1A6NEC2 478 aa8.2□□□□□ -1.1
SF3B1-212ENST00000496458 CNOT4O95628 575 aaKnown RBP8.2□□□□□ -1.1
SF3B1-212ENST00000496458 RGS3P49796 1198 aa8.2□□□□□ -1.1
SF3B1-212ENST00000496458 SEPT7Q16181 437 aaKnown RBP8.2□□□□□ -1.1
SF3B1-212ENST00000496458 TMEM200BQ69YZ2 307 aa8.2□□□□□ -1.1
SF3B1-212ENST00000496458 C16orf92Q96LL3 132 aa8.2□□□□□ -1.1
SF3B1-212ENST00000496458 KIAA1683Q9H0B3 1180 aa8.2□□□□□ -1.1
SF3B1-212ENST00000496458 TOMM22Q9NS69 142 aa8.2□□□□□ -1.1
SF3B1-212ENST00000496458 THG1LQ9NWX6 298 aaKnown RBP8.2□□□□□ -1.1
SF3B1-212ENST00000496458 Q9UFV3 132 aa8.2□□□□□ -1.1
SF3B1-212ENST00000496458 SPO11Q9Y5K1 396 aa8.2□□□□□ -1.1
SF3B1-212ENST00000496458 ROM1Q03395 351 aa8.19□□□□□ -1.1
SF3B1-212ENST00000496458 EIF4HQ15056 248 aaKnown RBP8.19□□□□□ -1.1
SF3B1-212ENST00000496458 ZMAT1Q5H9K5 638 aa8.19□□□□□ -1.1
SF3B1-212ENST00000496458 SLFN13Q68D06 897 aa8.19□□□□□ -1.1
SF3B1-212ENST00000496458 ESRP1Q6NXG1 681 aaKnown RBP8.19□□□□□ -1.1
SF3B1-212ENST00000496458 LARP4Q71RC2 724 aaKnown RBP eCLIP8.19□□□□□ -1.1
SF3B1-212ENST00000496458 PRRT2Q7Z6L0 340 aaPredicted RBP8.19□□□□□ -1.1
SF3B1-212ENST00000496458 AHI1Q8N157 1196 aa8.19□□□□□ -1.1
SF3B1-212ENST00000496458 CHTF18Q8WVB6 975 aa8.19□□□□□ -1.1
SF3B1-212ENST00000496458 LOXL4Q96JB6 756 aa8.19□□□□□ -1.1
SF3B1-212ENST00000496458 SSBP3Q9BWW4 388 aaPredicted RBP8.19□□□□□ -1.1
SF3B1-212ENST00000496458 MEGF9Q9H1U4 602 aa8.19□□□□□ -1.1
SF3B1-212ENST00000496458 XPO5Q9HAV4 1204 aaKnown RBP eCLIP8.19□□□□□ -1.1
SF3B1-212ENST00000496458 CNOT11Q9UKZ1 510 aaKnown RBP8.19□□□□□ -1.1
SF3B1-212ENST00000496458 MYCLP1P12525 358 aaPredicted RBP8.18□□□□□ -1.1
SF3B1-212ENST00000496458 STAT5BP51692 787 aa8.18□□□□□ -1.1
SF3B1-212ENST00000496458 GYS2P54840 703 aa8.18□□□□□ -1.1
SF3B1-212ENST00000496458 EPHA7Q15375 998 aa8.18□□□□□ -1.1
SF3B1-212ENST00000496458 TTC38Q5R3I4 469 aa8.18□□□□□ -1.1
SF3B1-212ENST00000496458 PRAMEF9Q5VWM5 478 aa8.18□□□□□ -1.1
SF3B1-212ENST00000496458 SLFN12LQ6IEE8 588 aa8.18□□□□□ -1.1
SF3B1-212ENST00000496458 SDE2Q6IQ49 451 aa8.18□□□□□ -1.1
SF3B1-212ENST00000496458 MAML3Q96JK9 1138 aa8.18□□□□□ -1.1
SF3B1-212ENST00000496458 SCYL1Q96KG9 808 aa8.18□□□□□ -1.1
SF3B1-212ENST00000496458 LRRC37BQ96QE4 947 aa8.18□□□□□ -1.1
SF3B1-212ENST00000496458 TUBGCP5Q96RT8 1024 aa8.18□□□□□ -1.1
SF3B1-212ENST00000496458 GSG1L2A8MUP6 293 aa8.17□□□□□ -1.1
Retrieved 100 of 20,778 RNA–protein pairs in 26.8 ms